Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002667.1

Orthogroup ID

OG0007180

Physical Location & Seq

Genomic Coordinates Reverse (-)

141942 .. 143106

Gene Structure 1165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002667.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgtccatccttacacatctagtatttctttcaaacatatcttgttcacatactaattctaatcgtgattcagctgtccagaaggaaatctcatccttagactcgaatcttgtgtttggagcaagtctagatttggatctgttggggattgaaattgatgatgagacattgattcctggattggctgttgcttcttcacgtgctaaaccactcgcagcttggatgaatgggttggaagtttgtgcgattgaagttgattttgcacgggcatgcttgattctttctgttggaatttctggccggtatatttatgctacctataagaaaagtccggtgacaacaaaggaagccgaagcttgggaagaagcaaagaaggcttgtggaggcttacatttccttgccatccaaggcgacttggaatcggatgactgcgttggattttggcttttgcttgacttgccacctccacctgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009639 GO:0009640 GO:0009657 GO:0009658 GO:0009704 GO:0009791 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0019538 GO:0019684 GO:0022607 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048564 GO:0048856 GO:0050896 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1092

Protein Analysis

158

Amino Acids

17.01

Weight (kDa)

4.55

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08010
fragaria_vesca	FvH4_7g01190 FvH4_7g01190 FvH4_7g01190 FvH4_7g01190 FvH4_7g01190
malus_domestica	MD02G1308600.v1.1 MD07G1013000.v1.1
prunus_persica	Prupe.2G015400_v2.0.a1 Prupe.2G015400_v2.0.a1 Prupe.2G016000_v2.0.a1
pyrus_communis	pycom02g25990 pycom07g01060
rosa_chinensis	RchiOBHm_Chr1g0316521
rosa_laevigata	RLG00000030664
rosa_multiflora	Rmu_sc0002667.1_g000022 Rmu_sc0039061.1_g000001 Rmu_sc0039062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330930
rosa_rugosa	Rorug01G0011900
rosa_samantha	Rh1AG021400 Rh1BG016800 Rh1CG019400 Rh1DG016700
rosa_wichuraiana	Rw1G001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	144
AcoI	YGGCCR	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	291
AcvI	CACGTG	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	357
AgsI	TTSAA	3 cut(s)	33, 152, 251
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	3 cut(s)	74, 218, 356
AluI	AGCT	3 cut(s)	74, 218, 356
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	144
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	346
BbrPI	CACGTG	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	227
BccI	CCATC	2 cut(s)	14, 410
BciT130I	CCWGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	2 cut(s)	20, 128
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	177
BsaAI	YACGTR	1 cut(s)	200
BsaBI	GATNNNNATC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	406
BsaWI	WCCGGW	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse118I	RCCGGY	1 cut(s)	300
Bse8I	GATNNNNATC	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	5 cut(s)	6, 92, 228, 402, 430
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseXI	GCAGC	1 cut(s)	227
BshFI	GGCC	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	301, 332
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmAI	GTCTC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	300
Bsp143I	GATC	1 cut(s)	136
BspANI	GGCC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	300
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	406
Bst2UI	CCWGG	1 cut(s)	177
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	97
BstF5I	GGATG	5 cut(s)	6, 92, 228, 402, 430
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 457
BstNI	CCWGG	1 cut(s)	177
BstNSI	RCATGY	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	300
BtsCI	GGATG	5 cut(s)	6, 92, 228, 402, 430
Cac8I	GCNNGC	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	300
CviAII	CATG	1 cut(s)	270
CviJI	RGCY	9 cut(s)	74, 185, 218, 300, 350, 356, 377, 387, 445
CviKI_1	RGCY	9 cut(s)	74, 185, 218, 300, 350, 356, 377, 387, 445
DdeI	CTNAG	1 cut(s)	97
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	406
Eco72I	CACGTG	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	406
FaeI	CATG	1 cut(s)	273
FaiI	YATR	7 cut(s)	38, 51, 271, 306, 312, 321, 475
FatI	CATG	1 cut(s)	269
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	4 cut(s)	79, 235, 389, 437
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	2 cut(s)	20, 128
GluI	GCNGC	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	300
HapII	CCGG	2 cut(s)	301, 332
Hin1II	CATG	1 cut(s)	273
HindIII	AAGCTT	1 cut(s)	354
HinfI	GANTC	6 cut(s)	68, 101, 106, 172, 277, 419
HpaII	CCGG	2 cut(s)	301, 332
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188I	TCNGA	1 cut(s)	424
Hpy188III	TCNNGA	3 cut(s)	65, 79, 128
Hpy8I	GTNNAC	1 cut(s)	47
HpyAV	CCTTC	2 cut(s)	76, 367
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 457
HpyF3I	CTNAG	1 cut(s)	97
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	1 cut(s)	273
Kzo9I	GATC	1 cut(s)	136
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	6 cut(s)	92, 162, 189, 282, 314, 345
Lsp1109I	GCAGC	1 cut(s)	227
MaeI	CTAG	2 cut(s)	20, 128
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	2 cut(s)	186, 374
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	3 cut(s)	55, 153, 291
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	3 cut(s)	213, 268, 415
MnlI	CCTC	2 cut(s)	377, 474
MslI	CAYNNNNRTG	1 cut(s)	268
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	2 cut(s)	301, 332
MspR9I	CCNGG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	2 cut(s)	374, 457
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	273
NmuCI	GTSAC	1 cut(s)	334
NspI	RCATGY	1 cut(s)	273
PaeI	GCATGC	1 cut(s)	273
PfeI	GAWTC	5 cut(s)	68, 106, 172, 277, 419
PfoI	TCCNGGA	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	1 cut(s)	95
PmaCI	CACGTG	1 cut(s)	200
PmlI	CACGTG	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	95
Ppu21I	YACGTR	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	175
PspCI	CACGTG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	268
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	177
SetI	ASST	7 cut(s)	76, 202, 220, 320, 358, 466, 472
SmiMI	CAYNNNNRTG	1 cut(s)	268
SphI	GCATGC	1 cut(s)	273
Sse9I	AATT	3 cut(s)	55, 153, 291
SspMI	CTAG	2 cut(s)	20, 128
StyD4I	CCNGG	1 cut(s)	175
StyI	CCWWGG	1 cut(s)	406
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	104
TasI	AATT	3 cut(s)	55, 153, 291
TfiI	GAWTC	5 cut(s)	68, 106, 172, 277, 419
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	1 cut(s)	239
XapI	RAATTY	1 cut(s)	291
XbaI	TCTAGA	1 cut(s)	127
XceI	RCATGY	1 cut(s)	273
XcmI	CCANNNNNNNNNTGG	1 cut(s)	216
XspI	CTAG	2 cut(s)	20, 128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.