Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007180

Physical Location & Seq

Genomic Coordinates Forward (+)

1600238 .. 1603416

Gene Structure 3179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01190.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCGAGCTTCAGCTTCAACACCACCAGAATCAGAACCCCAACTCTTCAATCTCACAAACCCATCTCTCGCTCTAAACCCACCAGACTTCCCTCTACTTTCACTTCAAACAACCTCCCAAAGCTTCACCATTTCCGACCAAACTCCGTGTCGGAAACCTCCGTCTCAACGCAACAAATAGACGAACAAGAAGTCGAAGATGACCCGACTGCCGAACTGAGCTACCTGGACCCGGAAACCGACCCGGAGAGCATTACGGAGTGGGAGCTGGACTTCTGCTCCAGGCCCATTTTGGATATCAGAGGAAAGAAAGTGTGGGAGCTTGTGGTTTGTGATGAGTCTCTTTCTTTACAGCACACAAAGTACTTCCCTAACAATGTCATCAACAGCATTACTTTGAAAGAAGCCATAGTTGCCATTAGTGATGAGCTAGGTGTGCCTCTGCCCGAGAAGATTCGATACTTCAGGTCACAGATGCAGACCATTATAACAAAAGCCTGTACCGAGCTTGGGATAAAGCCTATTCCGAGTAAAAGGTGCCTGTCACTGCTTTTGTGGTTGGAAGAACGCTATGAGACTGTATACACACGCCATCCTGGTTTCCAAAAAGGTTCAAAGCCTCTCCTTGCACTAGATAACCCTTTCCCCATGGAACTTCCAGAAAATCTTTTTGGAGAAAAATGGGCCTTTGTCCAACTGCCCTTTTCAGCTGTCCAGAAGGAAATCTCATCCTTGGACTCGAATCTGGTGTTTGGAGCAAGTCTGGATTTGGATCTGTTGGGGATTGAAATTGATGATGACACATTGATTCCTGGATTGGCTGTTGCGTCTTCACGTGCTAAACCACTCGCAGGACTTGTATACATTGTGCATGAGTTGTTCAATGTATTGCCCTCCAATTTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009639 GO:0009640 GO:0009657 GO:0009658 GO:0009704 GO:0009791 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0019538 GO:0019684 GO:0022607 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048564 GO:0048856 GO:0050896 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1092

Protein Analysis

303

Amino Acids

34.09

Weight (kDa)

5.1

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tab2-like_N	PF06485	88 - 190	3.5e-33	RNA-binding protein Tab2/Atab2 N terminal
Tab2-like_C	PF20429	207 - 286	1.6e-15	RNA-binding protein Tab2/Atab2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08010
fragaria_vesca	FvH4_7g01190 FvH4_7g01190 FvH4_7g01190 FvH4_7g01190 FvH4_7g01190
malus_domestica	MD02G1308600.v1.1 MD07G1013000.v1.1
prunus_persica	Prupe.2G015400_v2.0.a1 Prupe.2G015400_v2.0.a1 Prupe.2G016000_v2.0.a1
pyrus_communis	pycom02g25990 pycom07g01060
rosa_chinensis	RchiOBHm_Chr1g0316521
rosa_laevigata	RLG00000030664
rosa_multiflora	Rmu_sc0002667.1_g000022 Rmu_sc0039061.1_g000001 Rmu_sc0039062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330930
rosa_rugosa	Rorug01G0011900
rosa_samantha	Rh1AG021400 Rh1BG016800 Rh1CG019400 Rh1DG016700
rosa_wichuraiana	Rw1G001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	488
AccB1I	GGYRCC	1 cut(s)	537
AccI	GTMKAC	2 cut(s)	582, 861
AclWI	GGATC	1 cut(s)	780
AcuI	CTGAAG	1 cut(s)	448
AcvI	CACGTG	1 cut(s)	836
AfaI	GTAC	2 cut(s)	365, 502
AfiI	CCNNNNNNNGG	3 cut(s)	232, 510, 851
AgsI	TTSAA	7 cut(s)	19, 50, 108, 400, 615, 788, 883
AjnI	CCWGG	4 cut(s)	225, 281, 595, 811
AjuI	GAANNNNNNNTTGG	2 cut(s)	654, 686
AluBI	AGCT	9 cut(s)	9, 15, 124, 222, 268, 322, 430, 508, 710
AluI	AGCT	9 cut(s)	9, 15, 124, 222, 268, 322, 430, 508, 710
Alw26I	GTCTC	3 cut(s)	169, 345, 569
AlwI	GGATC	1 cut(s)	780
Ama87I	CYCGRG	1 cut(s)	446
AoxI	GGCC	2 cut(s)	284, 684
ArsI	GACNNNNNNTTYG	4 cut(s)	134, 166, 177, 209
AspS9I	GGNCC	3 cut(s)	229, 285, 684
AsuC2I	CCSGG	2 cut(s)	233, 245
AsuHPI	GGTGA	1 cut(s)	119
AvaI	CYCGRG	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	537
BarI	GAAGNNNNNNTAC	2 cut(s)	443, 475
BbrPI	CACGTG	1 cut(s)	836
BbsI	GAAGAC	1 cut(s)	822
BccI	CCATC	2 cut(s)	71, 600
BciT130I	CCWGG	4 cut(s)	227, 283, 597, 813
BcnI	CCSGG	2 cut(s)	233, 245
BcoDI	GTCTC	3 cut(s)	169, 345, 569
BfaI	CTAG	2 cut(s)	431, 632
BmcAI	AGTACT	1 cut(s)	365
Bme1390I	CCNGG	6 cut(s)	227, 233, 245, 283, 597, 813
Bme18I	GGWCC	1 cut(s)	229
BmeT110I	CYCGRG	1 cut(s)	446
BmgT120I	GGNCC	3 cut(s)	229, 285, 684
BmiI	GGNNCC	2 cut(s)	231, 539
BmrFI	CCNGG	6 cut(s)	227, 233, 245, 283, 597, 813
BmsI	GCATC	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	822
BpmI	CTGGAG	1 cut(s)	265
BpuMI	CCSGG	2 cut(s)	233, 245
BsaAI	YACGTR	1 cut(s)	836
BsaBI	GATNNNNATC	1 cut(s)	771
BsaJI	CCNNGG	2 cut(s)	648, 732
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 510, 851
Bse8I	GATNNNNATC	1 cut(s)	771
BseBI	CCWGG	4 cut(s)	227, 283, 597, 813
BseDI	CCNNGG	2 cut(s)	648, 732
BseGI	GGATG	2 cut(s)	592, 728
BseJI	GATNNNNATC	1 cut(s)	771
BseLI	CCNNNNNNNGG	3 cut(s)	232, 510, 851
BseMII	CTCAG	1 cut(s)	209
BshFI	GGCC	2 cut(s)	286, 686
BshNI	GGYRCC	1 cut(s)	537
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	2 cut(s)	233, 245
BslI	CCNNNNNNNGG	3 cut(s)	232, 510, 851
BsmAI	GTCTC	3 cut(s)	169, 345, 569
BsmBI	CGTCTC	1 cut(s)	169
BsnI	GGCC	2 cut(s)	286, 686
BsoBI	CYCGRG	1 cut(s)	446
Bsp143I	GATC	1 cut(s)	772
Bsp19I	CCATGG	1 cut(s)	648
BspANI	GGCC	2 cut(s)	286, 686
BspCNI	CTCAG	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	231, 539
BspPI	GGATC	1 cut(s)	780
BspT107I	GGYRCC	1 cut(s)	537
BssECI	CCNNGG	2 cut(s)	648, 732
BssMI	GATC	1 cut(s)	772
BssNAI	GTATAC	2 cut(s)	583, 862
BssT1I	CCWWGG	2 cut(s)	648, 732
Bst1107I	GTATAC	2 cut(s)	583, 862
Bst2UI	CCWGG	4 cut(s)	227, 283, 597, 813
Bst4CI	ACNGT	1 cut(s)	580
Bst6I	CTCTTC	1 cut(s)	51
BstBAI	YACGTR	1 cut(s)	836
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	218
BstDSI	CCRYGG	1 cut(s)	648
BstF5I	GGATG	2 cut(s)	592, 728
BstKTI	GATC	1 cut(s)	775
BstMAI	GTCTC	3 cut(s)	169, 345, 569
BstMBI	GATC	1 cut(s)	772
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 436
BstNI	CCWGG	4 cut(s)	227, 283, 597, 813
BstSCI	CCNGG	6 cut(s)	225, 231, 243, 281, 595, 811
BstV2I	GAAGAC	1 cut(s)	822
BstX2I	RGATCY	1 cut(s)	772
BstYI	RGATCY	1 cut(s)	772
BstZ17I	GTATAC	2 cut(s)	583, 862
BsuRI	GGCC	2 cut(s)	286, 686
BtgI	CCRYGG	1 cut(s)	648
BtsCI	GGATG	2 cut(s)	592, 728
BtsI	GCAGTG	1 cut(s)	545
BtsIMutI	CAGTG	1 cut(s)	545
Cac8I	GCNNGC	1 cut(s)	7
Cfr13I	GGNCC	3 cut(s)	229, 285, 684
CseI	GACGC	1 cut(s)	816
Csp6I	GTAC	2 cut(s)	364, 501
CviAII	CATG	3 cut(s)	649, 872, 904
CviQI	GTAC	2 cut(s)	364, 501
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	1 cut(s)	774
DpnII	GATC	1 cut(s)	772
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco130I	CCWWGG	2 cut(s)	648, 732
Eco32I	GATATC	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	448
Eco72I	CACGTG	1 cut(s)	836
Eco88I	CYCGRG	1 cut(s)	446
EcoRII	CCWGG	4 cut(s)	225, 281, 595, 811
EcoRV	GATATC	1 cut(s)	298
EcoT14I	CCWWGG	2 cut(s)	648, 732
ErhI	CCWWGG	2 cut(s)	648, 732
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	3 cut(s)	652, 875, 907
FaiI	YATR	8 cut(s)	410, 488, 573, 583, 650, 862, 873, 905
FatI	CATG	3 cut(s)	648, 871, 903
FblI	GTMKAC	2 cut(s)	582, 861
FokI	GGATG	2 cut(s)	579, 715
FspBI	CTAG	2 cut(s)	431, 632
GsuI	CTGGAG	1 cut(s)	265
HaeIII	GGCC	2 cut(s)	286, 686
HapII	CCGG	2 cut(s)	233, 245
HgaI	GACGC	1 cut(s)	816
Hin1II	CATG	3 cut(s)	652, 875, 907
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	6 cut(s)	30, 338, 454, 737, 742, 808
HpaII	CCGG	2 cut(s)	233, 245
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	2 cut(s)	583, 862
Hpy188I	TCNGA	5 cut(s)	35, 137, 154, 302, 528
Hpy188III	TCNNGA	3 cut(s)	659, 715, 764
Hpy8I	GTNNAC	2 cut(s)	583, 862
HpyAV	CCTTC	1 cut(s)	712
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4IV	ACGT	1 cut(s)	835
HpyCH4V	TGCA	3 cut(s)	478, 629, 871
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 436
HpyF3I	CTNAG	1 cut(s)	218
HpySE526I	ACGT	1 cut(s)	835
Hsp92II	CATG	3 cut(s)	652, 875, 907
Kzo9I	GATC	1 cut(s)	772
LmnI	GCTCC	4 cut(s)	265, 284, 319, 755
LweI	GCATC	1 cut(s)	465
MaeI	CTAG	2 cut(s)	431, 632
MaeII	ACGT	1 cut(s)	835
MaeIII	GTNAC	2 cut(s)	468, 543
MalI	GATC	1 cut(s)	774
MboI	GATC	1 cut(s)	772
MboII	GAAGA	5 cut(s)	38, 209, 463, 575, 822
MflI	RGATCY	1 cut(s)	772
MluCI	AATT	2 cut(s)	789, 898
MlyI	GAGTC	2 cut(s)	347, 731
MmeI	TCCRAC	4 cut(s)	132, 160, 540, 718
MnlI	CCTC	7 cut(s)	103, 125, 169, 296, 450, 630, 904
MspA1I	CMGCKG	1 cut(s)	710
MspI	CCGG	2 cut(s)	233, 245
MspR9I	CCNGG	6 cut(s)	227, 233, 245, 283, 597, 813
MvaI	CCWGG	4 cut(s)	227, 283, 597, 813
MwoI	GCNNNNNNNGC	2 cut(s)	413, 436
NciI	CCSGG	2 cut(s)	233, 245
NcoI	CCATGG	1 cut(s)	648
NdeII	GATC	1 cut(s)	772
NlaIII	CATG	3 cut(s)	652, 875, 907
NlaIV	GGNNCC	2 cut(s)	231, 539
NmuCI	GTSAC	2 cut(s)	468, 543
PfeI	GAWTC	4 cut(s)	30, 454, 742, 808
PfoI	TCCNGGA	1 cut(s)	811
PleI	GAGTC	2 cut(s)	346, 731
PmaCI	CACGTG	1 cut(s)	836
PmlI	CACGTG	1 cut(s)	836
PpsI	GAGTC	2 cut(s)	346, 731
Ppu21I	YACGTR	1 cut(s)	836
PsiI	TTATAA	1 cut(s)	488
Psp6I	CCWGG	4 cut(s)	225, 281, 595, 811
PspCI	CACGTG	1 cut(s)	836
PspGI	CCWGG	4 cut(s)	225, 281, 595, 811
PspN4I	GGNNCC	2 cut(s)	231, 539
PspPI	GGNCC	3 cut(s)	229, 285, 684
PsuI	RGATCY	1 cut(s)	772
PvuII	CAGCTG	1 cut(s)	710
RsaI	GTAC	2 cut(s)	365, 502
RsaNI	GTAC	2 cut(s)	364, 501
Sau3AI	GATC	1 cut(s)	772
Sau96I	GGNCC	3 cut(s)	229, 285, 684
ScaI	AGTACT	1 cut(s)	365
SchI	GAGTC	2 cut(s)	347, 731
ScrFI	CCNGG	6 cut(s)	227, 233, 245, 283, 597, 813
SfaNI	GCATC	1 cut(s)	465
SinI	GGWCC	1 cut(s)	229
Sse9I	AATT	2 cut(s)	789, 898
SspMI	CTAG	2 cut(s)	431, 632
StyD4I	CCNGG	6 cut(s)	225, 231, 243, 281, 595, 811
StyI	CCWWGG	2 cut(s)	648, 732
TaaI	ACNGT	1 cut(s)	580
TaiI	ACGT	1 cut(s)	838
TaqI	TCGA	3 cut(s)	195, 457, 740
TasI	AATT	2 cut(s)	789, 898
TatI	WGTACW	1 cut(s)	363
TfiI	GAWTC	4 cut(s)	30, 454, 742, 808
TscAI	CASTG	1 cut(s)	552
TseFI	GTSAC	2 cut(s)	468, 543
Tsp45I	GTSAC	2 cut(s)	468, 543
TspDTI	ATGAA	1 cut(s)	892
TspGWI	ACGGA	3 cut(s)	136, 151, 272
TspRI	CASTG	1 cut(s)	552
VpaK11BI	GGWCC	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XmiI	GTMKAC	2 cut(s)	582, 861
XspI	CTAG	2 cut(s)	431, 632
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.