Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007180

Physical Location & Seq

Genomic Coordinates Forward (+)

1987076 .. 1987656

Gene Structure 581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0011900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCTAGTCCTCCCCAAGCTTCAACCTATCTTCTCCTCAATTCTCAGGGTCCAGTATTCTCTGTGCTCGATCATCCTTTGTTCAATTGCCTCAGCAACTACATTTCTTACAATGGCTGGTCATTTGAGTGTTGCTGCTGTCAAGGCCTTGGTCTTTGCTTTCTTTGCGGTGGCTCTCTTCGCGGCTTCGTCTACTGCTCAAGATTTCGATGCTGCTGCAGCACCAGCCCCGGCGCCTGCTCTCGACCATGGAGCCGCCGCTCATTCTGCGATGGCCTCTGGAGCTATGATTATCTGCCTCCCACTTTTCTTGTCTGTGCTCGCTCTCTTCAAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009639 GO:0009640 GO:0009657 GO:0009658 GO:0009704 GO:0009791 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0019538 GO:0019684 GO:0022607 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048564 GO:0048856 GO:0050896 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1092

Protein Analysis

112

Amino Acids

11.51

Weight (kDa)

7.79

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08010
fragaria_vesca	FvH4_7g01190 FvH4_7g01190 FvH4_7g01190 FvH4_7g01190 FvH4_7g01190
malus_domestica	MD02G1308600.v1.1 MD07G1013000.v1.1
prunus_persica	Prupe.2G015400_v2.0.a1 Prupe.2G015400_v2.0.a1 Prupe.2G016000_v2.0.a1
pyrus_communis	pycom02g25990 pycom07g01060
rosa_chinensis	RchiOBHm_Chr1g0316521
rosa_laevigata	RLG00000030664
rosa_multiflora	Rmu_sc0002667.1_g000022 Rmu_sc0039061.1_g000001 Rmu_sc0039062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330930
rosa_rugosa	Rorug01G0011900
rosa_samantha	Rh1AG021400 Rh1BG016800 Rh1CG019400 Rh1DG016700
rosa_wichuraiana	Rw1G001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	232
AccBSI	CCGCTC	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	191
AccII	CGCG	1 cut(s)	182
AciI	CCGC	4 cut(s)	167, 182, 255, 258
AcyI	GRCGYC	1 cut(s)	233
AgsI	TTSAA	3 cut(s)	23, 84, 331
AluBI	AGCT	2 cut(s)	19, 284
AluI	AGCT	2 cut(s)	19, 284
Alw21I	GWGCWC	2 cut(s)	68, 321
AoxI	GGCC	2 cut(s)	144, 273
ApeKI	GCWGC	4 cut(s)	134, 212, 215, 218
AspLEI	GCGC	1 cut(s)	235
AspS9I	GGNCC	1 cut(s)	49
AsuC2I	CCSGG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	232
Bbv12I	GWGCWC	2 cut(s)	68, 321
BbvCI	CCTCAGC	1 cut(s)	91
BbvI	GCAGC	4 cut(s)	121, 199, 202, 230
BccI	CCATC	1 cut(s)	265
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BcnI	CCSGG	1 cut(s)	230
BfaI	CTAG	2 cut(s)	5, 337
BfmI	CTRYAG	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	236
BisI	GCNGC	7 cut(s)	135, 183, 213, 216, 219, 255, 258
BlsI	GCNGC	7 cut(s)	136, 184, 214, 217, 220, 256, 259
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	3 cut(s)	50, 234, 253
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	199
BpmI	CTGGAG	1 cut(s)	300
Bpu10I	CCTNAGC	1 cut(s)	91
BpuEI	CTTGAG	1 cut(s)	183
BpuMI	CCSGG	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	233
BsaJI	CCNNGG	3 cut(s)	147, 228, 247
Bse1I	ACTGG	1 cut(s)	52
BseDI	CCNNGG	3 cut(s)	147, 228, 247
BseGI	GGATG	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	58, 105
BseNI	ACTGG	1 cut(s)	52
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	4 cut(s)	121, 199, 202, 230
Bsh1236I	CGCG	1 cut(s)	182
BshFI	GGCC	2 cut(s)	146, 275
BshNI	GGYRCC	1 cut(s)	232
BsiHKAI	GWGCWC	2 cut(s)	68, 321
BsiSI	CCGG	1 cut(s)	230
BsnI	GGCC	2 cut(s)	146, 275
Bsp1286I	GDGCHC	2 cut(s)	68, 321
Bsp143I	GATC	1 cut(s)	69
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	4 cut(s)	167, 182, 255, 258
BspANI	GGCC	2 cut(s)	146, 275
BspCNI	CTCAG	2 cut(s)	57, 104
BspFNI	CGCG	1 cut(s)	182
BspLI	GGNNCC	3 cut(s)	50, 234, 253
BspMAI	CTGCAG	1 cut(s)	220
BspT107I	GGYRCC	1 cut(s)	232
BsrBI	CCGCTC	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	3 cut(s)	147, 228, 247
BssMI	GATC	1 cut(s)	69
BssNI	GRCGYC	1 cut(s)	233
BssT1I	CCWWGG	2 cut(s)	147, 247
Bst6I	CTCTTC	2 cut(s)	182, 332
BstACI	GRCGYC	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	237, 321
BstDEI	CTNAG	2 cut(s)	44, 91
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	1 cut(s)	182
BstH2I	RGCGCY	1 cut(s)	236
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	7 cut(s)	143, 164, 179, 218, 224, 266, 281
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	4 cut(s)	121, 199, 202, 230
BsuRI	GGCC	2 cut(s)	146, 275
BtgI	CCRYGG	1 cut(s)	247
BtgZI	GCGATG	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	72
Cac8I	GCNNGC	2 cut(s)	237, 321
CfoI	GCGC	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	49
CspCI	CAANNNNNGTGG	2 cut(s)	291, 326
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	9 cut(s)	19, 116, 146, 173, 185, 227, 254, 275, 284
CviKI_1	RGCY	9 cut(s)	19, 116, 146, 173, 185, 227, 254, 275, 284
DdeI	CTNAG	2 cut(s)	44, 91
DinI	GGCGCC	1 cut(s)	234
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
Eam1104I	CTCTTC	2 cut(s)	182, 332
EarI	CTCTTC	2 cut(s)	182, 332
Eco130I	CCWWGG	2 cut(s)	147, 247
Eco147I	AGGCCT	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	49
EcoT14I	CCWWGG	2 cut(s)	147, 247
EgeI	GGCGCC	1 cut(s)	234
EheI	GGCGCC	1 cut(s)	234
ErhI	CCWWGG	2 cut(s)	147, 247
FaeI	CATG	1 cut(s)	251
FaiI	YATR	2 cut(s)	249, 287
FatI	CATG	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	191
Fnu4HI	GCNGC	7 cut(s)	135, 183, 213, 216, 219, 255, 258
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	7 cut(s)	135, 183, 213, 216, 219, 255, 258
FspBI	CTAG	2 cut(s)	5, 337
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	7 cut(s)	135, 183, 213, 216, 219, 255, 258
GsuI	CTGGAG	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	236
HaeIII	GGCC	2 cut(s)	146, 275
HapII	CCGG	1 cut(s)	230
HhaI	GCGC	1 cut(s)	235
Hin1I	GRCGYC	1 cut(s)	233
Hin1II	CATG	1 cut(s)	251
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HindIII	AAGCTT	1 cut(s)	17
HpaII	CCGG	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188III	TCNNGA	3 cut(s)	200, 242, 279
Hpy8I	GTNNAC	1 cut(s)	192
HpyCH4V	TGCA	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	7 cut(s)	143, 164, 179, 218, 224, 266, 281
HpyF3I	CTNAG	2 cut(s)	44, 91
Hsp92I	GRCGYC	1 cut(s)	233
Hsp92II	CATG	1 cut(s)	251
HspAI	GCGC	1 cut(s)	233
KasI	GGCGCC	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	251, 281
LpnPI	CCDG	7 cut(s)	31, 65, 102, 237, 243, 249, 264
Lsp1109I	GCAGC	4 cut(s)	121, 199, 202, 230
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	2 cut(s)	5, 337
MalI	GATC	1 cut(s)	71
MbiI	CCGCTC	1 cut(s)	260
MboI	GATC	1 cut(s)	69
MboII	GAAGA	3 cut(s)	22, 169, 319
MfeI	CAATTG	1 cut(s)	84
MhlI	GDGCHC	2 cut(s)	68, 321
MluCI	AATT	2 cut(s)	39, 84
Mly113I	GGCGCC	1 cut(s)	233
MnlI	CCTC	5 cut(s)	20, 46, 100, 286, 308
MslI	CAYNNNNRTG	1 cut(s)	126
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	230
MunI	CAATTG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	7 cut(s)	143, 164, 179, 218, 224, 266, 281
NarI	GGCGCC	1 cut(s)	233
NciI	CCSGG	1 cut(s)	230
NcoI	CCATGG	1 cut(s)	247
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	3 cut(s)	50, 234, 253
PceI	AGGCCT	1 cut(s)	146
PkrI	GCNGC	7 cut(s)	136, 184, 214, 217, 220, 256, 259
PluTI	GGCGCC	1 cut(s)	236
PspN4I	GGNNCC	3 cut(s)	50, 234, 253
PspPI	GGNCC	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	126
SatI	GCNGC	7 cut(s)	135, 183, 213, 216, 219, 255, 258
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	2 cut(s)	68, 321
SetI	ASST	3 cut(s)	21, 28, 286
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	216
SfoI	GGCGCC	1 cut(s)	234
SinI	GGWCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
Sse9I	AATT	2 cut(s)	39, 84
SseBI	AGGCCT	1 cut(s)	146
SsiI	CCGC	4 cut(s)	167, 182, 255, 258
SspDI	GGCGCC	1 cut(s)	232
SspMI	CTAG	2 cut(s)	5, 337
StuI	AGGCCT	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	2 cut(s)	147, 247
TaqI	TCGA	3 cut(s)	68, 207, 243
TasI	AATT	2 cut(s)	39, 84
TauI	GCSGC	3 cut(s)	185, 257, 260
TseI	GCWGC	4 cut(s)	134, 212, 215, 218
VpaK11BI	GGWCC	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	191
XspI	CTAG	2 cut(s)	5, 337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.