Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0007180

Physical Location & Seq

Genomic Coordinates Forward (+)

2333643 .. 2336667

Gene Structure 3025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G001400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCAAGCTTCACCTTCAACACCACCAGAATCAGAACCCCAACTCTTCAATCTCACAAACCCATCTCTCGCCCTAAACCCATCAGAATCCCCTTTACTTTTTCCTCCAATCCTTCAAACAACCCACCAAAGCTTCACCATTTCCGATCAAACTCCGTGTCGGAAAGCTCCGTCTCTACCCAAGAAATAGACGAAAGTGGCGAAGTCGAAGATGACCCGACAGCTGAACTGAGCTATCTGGACCCTGAAACCGACCCGGAGAGCATTACGGAGTGGGAACTGGACTTCTGCTCCAGGCCCATTTTGGATATCAGAGGCAAGAAAGTGTGGGAGCTTGTAGTTTGTGATGAGTCTCTTTCTTTACAGCATACAAAGTACTTCCCTAACAATGTCATCAACAGCATTACTTTGAAAGAAGCCATAGTTGCCATTAGTGATGAATTAGGTGTACCTCTACCCGAGAAAATCCGATACTTCAGGTCACAGATGCAGACCATTATAACAAAAGCGTGTAACGAGCTTGGTATAAAGCCTATTCCAAGTAAAAGGTGCCTATCACTGCTTTTATGGTTGGAAGAACGCTATGAGACTGTATACACACGCCATCCTGGTTTCCAGAAAGGTTCTAAGCCTCTCCTTGCACTAGATAACCCTTTCCCCATGGAACTTCCAGAAAATCTTTTTGGGGAGAAATGGGCCTTTGTCCAACTGCCCTTTTCAGCTGTCCAGAAGGAAATCTCATCCTTAGACTCGAATCTTGTGTTTGGAGCAAGTCTAGATTTGGATCTGTTGGGGATTGAAATTGATGATGAGACATTGATTCCTGGATTGGCTGTTGCTTCATCACGTGCTAAACCACTCGCAGCTTGGATGAATGGGTTGGAAGTTTGTGCGATTGAAGTTGATTTTGCACGGGCATGCTTGATTCTTTCTGTCGGAATTTCTGGCCGGTATATTTATGCTACCTATAAGAAAAGTCCGGTGACAACAAAGGAAGCCGAAGCATGGGAAGAAGCAAAGAAAACTTGTGGAGGCTTACATTTCCTTGCCATCCAAGGGGACTTGGAATCAGATGACTGCGTTGGATTTTGGCTTTTGCTCGACTTGCCACCTCCACCTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009639 GO:0009640 GO:0009657 GO:0009658 GO:0009704 GO:0009791 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0019538 GO:0019684 GO:0022607 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048564 GO:0048856 GO:0050896 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1092

Protein Analysis

374

Amino Acids

41.81

Weight (kDa)

4.92

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tab2-like_N	PF06485	92 - 194	3.8e-33	RNA-binding protein Tab2/Atab2 N terminal
Tab2-like_C	PF20429	211 - 366	7.4e-45	RNA-binding protein Tab2/Atab2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08010
fragaria_vesca	FvH4_7g01190 FvH4_7g01190 FvH4_7g01190 FvH4_7g01190 FvH4_7g01190
malus_domestica	MD02G1308600.v1.1 MD07G1013000.v1.1
prunus_persica	Prupe.2G015400_v2.0.a1 Prupe.2G015400_v2.0.a1 Prupe.2G016000_v2.0.a1
pyrus_communis	pycom02g25990 pycom07g01060
rosa_chinensis	RchiOBHm_Chr1g0316521
rosa_laevigata	RLG00000030664
rosa_multiflora	Rmu_sc0002667.1_g000022 Rmu_sc0039061.1_g000001 Rmu_sc0039062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330930
rosa_rugosa	Rorug01G0011900
rosa_samantha	Rh1AG021400 Rh1BG016800 Rh1CG019400 Rh1DG016700
rosa_wichuraiana	Rw1G001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	500
AccB1I	GGYRCC	1 cut(s)	549
AccI	GTMKAC	1 cut(s)	594
AclWI	GGATC	1 cut(s)	792
AcoI	YGGCCR	1 cut(s)	946
AcsI	RAATTY	1 cut(s)	939
AcuI	CTGAAG	1 cut(s)	460
AcvI	CACGTG	1 cut(s)	848
AfaI	GTAC	2 cut(s)	377, 450
AfiI	CCNNNNNNNGG	2 cut(s)	1005, 1056
AgsI	TTSAA	6 cut(s)	19, 50, 117, 412, 800, 899
AjnI	CCWGG	3 cut(s)	293, 607, 823
AjuI	GAANNNNNNNTTGG	2 cut(s)	666, 698
AluBI	AGCT	9 cut(s)	9, 133, 168, 224, 234, 334, 520, 722, 866
AluI	AGCT	9 cut(s)	9, 133, 168, 224, 234, 334, 520, 722, 866
Alw26I	GTCTC	4 cut(s)	178, 357, 581, 806
AlwI	GGATC	1 cut(s)	792
Ama87I	CYCGRG	1 cut(s)	458
AoxI	GGCC	3 cut(s)	296, 696, 946
ApeKI	GCWGC	1 cut(s)	863
ApoI	RAATTY	1 cut(s)	939
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AspS9I	GGNCC	3 cut(s)	241, 297, 696
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	3 cut(s)	4, 128, 994
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	549
BbrPI	CACGTG	1 cut(s)	848
BbvI	GCAGC	1 cut(s)	875
BccI	CCATC	4 cut(s)	71, 89, 612, 1058
BciT130I	CCWGG	3 cut(s)	295, 609, 825
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	4 cut(s)	178, 357, 581, 806
BfaI	CTAG	2 cut(s)	644, 776
BisI	GCNGC	1 cut(s)	864
BlsI	GCNGC	1 cut(s)	865
BmcAI	AGTACT	1 cut(s)	377
Bme1390I	CCNGG	4 cut(s)	257, 295, 609, 825
Bme18I	GGWCC	1 cut(s)	241
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	3 cut(s)	241, 297, 696
BmiI	GGNNCC	2 cut(s)	243, 551
BmrFI	CCNGG	4 cut(s)	257, 295, 609, 825
BmsI	GCATC	1 cut(s)	477
BpmI	CTGGAG	1 cut(s)	277
BpuMI	CCSGG	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	848
BsaBI	GATNNNNATC	1 cut(s)	783
BsaJI	CCNNGG	2 cut(s)	660, 1054
BsaWI	WCCGGW	1 cut(s)	979
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	1005, 1056
Bse118I	RCCGGY	1 cut(s)	948
Bse1I	ACTGG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	783
BseBI	CCWGG	3 cut(s)	295, 609, 825
BseDI	CCNNGG	2 cut(s)	660, 1054
BseGI	GGATG	4 cut(s)	604, 740, 876, 1050
BseJI	GATNNNNATC	1 cut(s)	783
BseLI	CCNNNNNNNGG	2 cut(s)	1005, 1056
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	875
BshFI	GGCC	3 cut(s)	298, 698, 948
BshNI	GGYRCC	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	3 cut(s)	257, 949, 980
BslFI	GGGAC	1 cut(s)	1073
BslI	CCNNNNNNNGG	2 cut(s)	1005, 1056
BsmAI	GTCTC	4 cut(s)	178, 357, 581, 806
BsmBI	CGTCTC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	1073
BsnI	GGCC	3 cut(s)	298, 698, 948
BsoBI	CYCGRG	1 cut(s)	458
Bsp143I	GATC	2 cut(s)	146, 784
Bsp19I	CCATGG	1 cut(s)	660
BspANI	GGCC	3 cut(s)	298, 698, 948
BspCNI	CTCAG	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	243, 551
BspPI	GGATC	1 cut(s)	792
BspT107I	GGYRCC	1 cut(s)	549
BsrFI	RCCGGY	1 cut(s)	948
BsrI	ACTGG	1 cut(s)	285
BssAI	RCCGGY	1 cut(s)	948
BssECI	CCNNGG	2 cut(s)	660, 1054
BssMI	GATC	2 cut(s)	146, 784
BssNAI	GTATAC	1 cut(s)	595
BssT1I	CCWWGG	2 cut(s)	660, 1054
Bst1107I	GTATAC	1 cut(s)	595
Bst2UI	CCWGG	3 cut(s)	295, 609, 825
Bst4CI	ACNGT	1 cut(s)	592
Bst6I	CTCTTC	1 cut(s)	51
BstBAI	YACGTR	1 cut(s)	848
BstC8I	GCNNGC	2 cut(s)	7, 919
BstDEI	CTNAG	3 cut(s)	230, 627, 745
BstDSI	CCRYGG	1 cut(s)	660
BstF5I	GGATG	4 cut(s)	604, 740, 876, 1050
BstKTI	GATC	2 cut(s)	149, 787
BstMAI	GTCTC	4 cut(s)	178, 357, 581, 806
BstMBI	GATC	2 cut(s)	146, 784
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 1105
BstNI	CCWGG	3 cut(s)	295, 609, 825
BstNSI	RCATGY	1 cut(s)	921
BstSCI	CCNGG	4 cut(s)	255, 293, 607, 823
BstV1I	GCAGC	1 cut(s)	875
BstX2I	RGATCY	1 cut(s)	784
BstYI	RGATCY	1 cut(s)	784
BstZ17I	GTATAC	1 cut(s)	595
BsuRI	GGCC	3 cut(s)	298, 698, 948
BtgI	CCRYGG	1 cut(s)	660
BtsCI	GGATG	4 cut(s)	604, 740, 876, 1050
BtsI	GCAGTG	1 cut(s)	557
BtsIMutI	CAGTG	1 cut(s)	557
Cac8I	GCNNGC	2 cut(s)	7, 919
Cfr10I	RCCGGY	1 cut(s)	948
Cfr13I	GGNCC	3 cut(s)	241, 297, 696
Csp6I	GTAC	2 cut(s)	376, 449
CviAII	CATG	3 cut(s)	661, 918, 1005
CviQI	GTAC	2 cut(s)	376, 449
DdeI	CTNAG	3 cut(s)	230, 627, 745
DpnI	GATC	2 cut(s)	148, 786
DpnII	GATC	2 cut(s)	146, 784
EaeI	YGGCCR	1 cut(s)	946
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco130I	CCWWGG	2 cut(s)	660, 1054
Eco32I	GATATC	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	460
Eco72I	CACGTG	1 cut(s)	848
Eco88I	CYCGRG	1 cut(s)	458
EcoRII	CCWGG	3 cut(s)	293, 607, 823
EcoRV	GATATC	1 cut(s)	310
EcoT14I	CCWWGG	2 cut(s)	660, 1054
ErhI	CCWWGG	2 cut(s)	660, 1054
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	3 cut(s)	664, 921, 1008
FaqI	GGGAC	1 cut(s)	1073
FatI	CATG	3 cut(s)	660, 917, 1004
FblI	GTMKAC	1 cut(s)	594
Fnu4HI	GCNGC	1 cut(s)	864
FokI	GGATG	4 cut(s)	591, 727, 883, 1037
Fsp4HI	GCNGC	1 cut(s)	864
FspBI	CTAG	2 cut(s)	644, 776
GluI	GCNGC	1 cut(s)	864
GsuI	CTGGAG	1 cut(s)	277
HaeIII	GGCC	3 cut(s)	298, 698, 948
HapII	CCGG	3 cut(s)	257, 949, 980
Hin1II	CATG	3 cut(s)	664, 921, 1008
HindIII	AAGCTT	2 cut(s)	7, 131
HinfI	GANTC	8 cut(s)	30, 87, 350, 749, 754, 820, 925, 1067
HpaII	CCGG	3 cut(s)	257, 949, 980
HphI	GGTGA	3 cut(s)	4, 128, 994
Hpy166II	GTNNAC	2 cut(s)	449, 595
Hpy188I	TCNGA	8 cut(s)	35, 86, 146, 163, 314, 470, 938, 1072
Hpy188III	TCNNGA	5 cut(s)	239, 616, 671, 727, 776
Hpy8I	GTNNAC	2 cut(s)	449, 595
HpyAV	CCTTC	3 cut(s)	25, 123, 724
HpyCH4III	ACNGT	1 cut(s)	592
HpyCH4IV	ACGT	1 cut(s)	847
HpyCH4V	TGCA	3 cut(s)	490, 641, 911
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 1105
HpyF3I	CTNAG	3 cut(s)	230, 627, 745
HpySE526I	ACGT	1 cut(s)	847
Hsp92II	CATG	3 cut(s)	664, 921, 1008
Kzo9I	GATC	2 cut(s)	146, 784
LmnI	GCTCC	4 cut(s)	173, 296, 331, 767
Lsp1109I	GCAGC	1 cut(s)	875
LweI	GCATC	1 cut(s)	477
MaeI	CTAG	2 cut(s)	644, 776
MaeII	ACGT	1 cut(s)	847
MaeIII	GTNAC	3 cut(s)	480, 512, 982
MalI	GATC	2 cut(s)	148, 786
MboI	GATC	2 cut(s)	146, 784
MboII	GAAGA	4 cut(s)	38, 221, 587, 1022
MflI	RGATCY	1 cut(s)	784
MluCI	AATT	3 cut(s)	440, 801, 939
MlyI	GAGTC	2 cut(s)	359, 743
MmeI	TCCRAC	6 cut(s)	141, 552, 730, 861, 916, 1063
MnlI	CCTC	6 cut(s)	115, 308, 462, 642, 1025, 1122
MslI	CAYNNNNRTG	1 cut(s)	916
MspA1I	CMGCKG	2 cut(s)	224, 722
MspI	CCGG	3 cut(s)	257, 949, 980
MspR9I	CCNGG	4 cut(s)	257, 295, 609, 825
MvaI	CCWGG	3 cut(s)	295, 609, 825
MwoI	GCNNNNNNNGC	2 cut(s)	425, 1105
NciI	CCSGG	1 cut(s)	257
NcoI	CCATGG	1 cut(s)	660
NdeII	GATC	2 cut(s)	146, 784
NlaIII	CATG	3 cut(s)	664, 921, 1008
NlaIV	GGNNCC	2 cut(s)	243, 551
NmuCI	GTSAC	2 cut(s)	480, 982
NspI	RCATGY	1 cut(s)	921
PaeI	GCATGC	1 cut(s)	921
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	6 cut(s)	30, 87, 754, 820, 925, 1067
PfoI	TCCNGGA	1 cut(s)	823
PkrI	GCNGC	1 cut(s)	865
PleI	GAGTC	2 cut(s)	358, 743
PmaCI	CACGTG	1 cut(s)	848
PmlI	CACGTG	1 cut(s)	848
PpsI	GAGTC	2 cut(s)	358, 743
Ppu21I	YACGTR	1 cut(s)	848
PsiI	TTATAA	1 cut(s)	500
Psp6I	CCWGG	3 cut(s)	293, 607, 823
PspCI	CACGTG	1 cut(s)	848
PspGI	CCWGG	3 cut(s)	293, 607, 823
PspN4I	GGNNCC	2 cut(s)	243, 551
PspPI	GGNCC	3 cut(s)	241, 297, 696
PsuI	RGATCY	1 cut(s)	784
PvuII	CAGCTG	2 cut(s)	224, 722
RsaI	GTAC	2 cut(s)	377, 450
RsaNI	GTAC	2 cut(s)	376, 449
RseI	CAYNNNNRTG	1 cut(s)	916
SatI	GCNGC	1 cut(s)	864
Sau3AI	GATC	2 cut(s)	146, 784
Sau96I	GGNCC	3 cut(s)	241, 297, 696
ScaI	AGTACT	1 cut(s)	377
SchI	GAGTC	2 cut(s)	359, 743
ScrFI	CCNGG	4 cut(s)	257, 295, 609, 825
SfaNI	GCATC	1 cut(s)	477
SinI	GGWCC	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	916
SphI	GCATGC	1 cut(s)	921
Sse9I	AATT	3 cut(s)	440, 801, 939
SspMI	CTAG	2 cut(s)	644, 776
StyD4I	CCNGG	4 cut(s)	255, 293, 607, 823
StyI	CCWWGG	2 cut(s)	660, 1054
TaaI	ACNGT	1 cut(s)	592
TaiI	ACGT	1 cut(s)	850
TaqI	TCGA	3 cut(s)	207, 752, 1101
TasI	AATT	3 cut(s)	440, 801, 939
TatI	WGTACW	1 cut(s)	375
TfiI	GAWTC	6 cut(s)	30, 87, 754, 820, 925, 1067
TscAI	CASTG	1 cut(s)	564
TseFI	GTSAC	2 cut(s)	480, 982
TseI	GCWGC	1 cut(s)	863
Tsp45I	GTSAC	2 cut(s)	480, 982
TspDTI	ATGAA	3 cut(s)	453, 831, 887
TspGWI	ACGGA	3 cut(s)	145, 160, 284
TspRI	CASTG	1 cut(s)	564
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	1 cut(s)	939
XbaI	TCTAGA	1 cut(s)	775
XceI	RCATGY	1 cut(s)	921
XcmI	CCANNNNNNNNNTGG	2 cut(s)	301, 864
XmiI	GTMKAC	1 cut(s)	594
XspI	CTAG	2 cut(s)	644, 776
ZrmI	AGTACT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.