Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039061.1

Orthogroup ID

OG0007180

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 290

Gene Structure 289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039061.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 289 bp

atggcaagcttcaccttcaacaccaccagaatcagaaccccaactcttcaatctcacaaacccatctctcgccctaaacccatcagaatcccctttactttttcctccaatccttcaaacaacccaccaaagcttcaccatttccgatcaaactccgtgtcggaaagctccgtctctacccaagaaatagacgaaagtggcgaagtcgaagatgacccgacagctgaactgagctatctggaccctgaaaccgacccggagagcattacggagtgggaactggacttct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009639 GO:0009640 GO:0009657 GO:0009658 GO:0009704 GO:0009791 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0019538 GO:0019684 GO:0022607 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048564 GO:0048856 GO:0050896 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1092

Protein Analysis

96

Amino Acids

10.89

Weight (kDa)

4.65

Isoelectric Point (pI)

53.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0007180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08010
fragaria_vesca	FvH4_7g01190 FvH4_7g01190 FvH4_7g01190 FvH4_7g01190 FvH4_7g01190
malus_domestica	MD02G1308600.v1.1 MD07G1013000.v1.1
prunus_persica	Prupe.2G015400_v2.0.a1 Prupe.2G015400_v2.0.a1 Prupe.2G016000_v2.0.a1
pyrus_communis	pycom02g25990 pycom07g01060
rosa_chinensis	RchiOBHm_Chr1g0316521
rosa_laevigata	RLG00000030664
rosa_multiflora	Rmu_sc0002667.1_g000022 Rmu_sc0039061.1_g000001 Rmu_sc0039062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330930
rosa_rugosa	Rorug01G0011900
rosa_samantha	Rh1AG021400 Rh1BG016800 Rh1CG019400 Rh1DG016700
rosa_wichuraiana	Rw1G001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	3 cut(s)	19, 50, 117
AluBI	AGCT	5 cut(s)	9, 133, 168, 224, 234
AluI	AGCT	5 cut(s)	9, 133, 168, 224, 234
Alw26I	GTCTC	1 cut(s)	178
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AspS9I	GGNCC	1 cut(s)	241
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	4, 128
AvaII	GGWCC	1 cut(s)	241
BccI	CCATC	2 cut(s)	71, 89
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	178
BsmBI	CGTCTC	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	285
BssMI	GATC	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	230
BstKTI	GATC	1 cut(s)	149
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	241
CviJI	RGCY	5 cut(s)	9, 133, 168, 224, 234
CviKI_1	RGCY	5 cut(s)	9, 133, 168, 224, 234
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	1 cut(s)	148
DpnII	GATC	1 cut(s)	146
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	178
HapII	CCGG	1 cut(s)	257
HindIII	AAGCTT	2 cut(s)	7, 131
HinfI	GANTC	2 cut(s)	30, 87
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	2 cut(s)	4, 128
Hpy188I	TCNGA	4 cut(s)	35, 86, 146, 163
Hpy188III	TCNNGA	1 cut(s)	239
HpyAV	CCTTC	2 cut(s)	25, 123
HpyF3I	CTNAG	1 cut(s)	230
Kzo9I	GATC	1 cut(s)	146
LmnI	GCTCC	1 cut(s)	173
LpnPI	CCDG	5 cut(s)	40, 224, 258, 266, 270
MalI	GATC	1 cut(s)	148
MboI	GATC	1 cut(s)	146
MboII	GAAGA	2 cut(s)	38, 221
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	1 cut(s)	115
MspA1I	CMGCKG	1 cut(s)	224
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	257
NciI	CCSGG	1 cut(s)	257
NdeII	GATC	1 cut(s)	146
NlaIV	GGNNCC	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	2 cut(s)	30, 87
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	241
PvuII	CAGCTG	1 cut(s)	224
Sau3AI	GATC	1 cut(s)	146
Sau96I	GGNCC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	257
SetI	ASST	6 cut(s)	11, 17, 135, 170, 226, 236
SinI	GGWCC	1 cut(s)	241
StyD4I	CCNGG	1 cut(s)	255
TaqI	TCGA	1 cut(s)	207
TfiI	GAWTC	2 cut(s)	30, 87
TspGWI	ACGGA	3 cut(s)	145, 160, 284
VpaK11BI	GGWCC	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.