Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007180

Physical Location & Seq

Genomic Coordinates Forward (+)

2740000 .. 2743213

Gene Structure 3214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG016700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCAAGCTTCACCTTCAACACCACCAGAATCAGAACCCCAACTCTTCAATCTCACAAACCCATCTCTCGCCCTAAACCCATCAGAATCCCCTTTACTTTCTCCTCCAACCCTTCAAACAACCCACCAAAGCTTCACCACTTTCGATCAAACTCCGTGTCGGAAAGCTCCGTCTCAACGCAAGAAATAGACGAAAGTGGCGAAGTCGAAGATGACCCGACTGCTGAACTGAGCTATCTGGACCCTGAAACCGACCCGGAGAGCATTACGGAGTGGGAACTGGACTTCTGCTCCAGACCCATTTTGGATATCAGAGGCAAGAAAGTGTGGGAGCTTGTAGTTTGTGATGAGTCTCTTTCTTTACAGCATACAAAGTACTTCCCTAACAATGTCATCAACAGCATTACTTTGAAAGAAGCTATAGTTGCCATTAGTGATGAATTAGGTGTACCTCTACCCGAGAAAATCCGATACTTCAGGTCACAGATGCAGACCATTATAACAAAAGCGTGTAACGAGCTTGGAATAAAGCCTATTCCAAGTAAAAGGTGCCTATCACTGCTTTTATGGTTGGAAGAACGCTATGAGACTGTGTACACACGCCATCCTGGTTTCCAGAAAGGTTCTAAGCCTCTCCTTGCACTAGATAACCCTTTCCCCATGGAACTTCCAGAAAATCTTTTTGGGGAGAAATGGGCCTTTGTCCAACTGCCCTTTTCAGCTGTCCAGAAGGAAATCTCATCCTTAGACTCGAATCTTGTGTTTGGAGCAAGTCTAGATTTGGATCTGTTGGGGATTGAAATTGATGATGAGACATTGATTCCTGGATTGGCTGTTGCTTCTTCACGTGCTAAACCACTCGCAGGTGCAAAGTCTCTTGAATACAATCTTCTAGTATTTCTAAATCATGACTATTGCTTCTCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009639 GO:0009640 GO:0009657 GO:0009658 GO:0009704 GO:0009791 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0019538 GO:0019684 GO:0022607 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048564 GO:0048856 GO:0050896 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1092

Protein Analysis

309

Amino Acids

34.8

Weight (kDa)

5.05

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tab2-like_N	PF06485	92 - 194	2.6e-33	RNA-binding protein Tab2/Atab2 N terminal
Tab2-like_C	PF20429	211 - 289	2.8e-15	RNA-binding protein Tab2/Atab2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08010
fragaria_vesca	FvH4_7g01190 FvH4_7g01190 FvH4_7g01190 FvH4_7g01190 FvH4_7g01190
malus_domestica	MD02G1308600.v1.1 MD07G1013000.v1.1
prunus_persica	Prupe.2G015400_v2.0.a1 Prupe.2G015400_v2.0.a1 Prupe.2G016000_v2.0.a1
pyrus_communis	pycom02g25990 pycom07g01060
rosa_chinensis	RchiOBHm_Chr1g0316521
rosa_laevigata	RLG00000030664
rosa_multiflora	Rmu_sc0002667.1_g000022 Rmu_sc0039061.1_g000001 Rmu_sc0039062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330930
rosa_rugosa	Rorug01G0011900
rosa_samantha	Rh1AG021400 Rh1BG016800 Rh1CG019400 Rh1DG016700
rosa_wichuraiana	Rw1G001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	500
AarI	CACCTGC	1 cut(s)	854
Acc36I	ACCTGC	1 cut(s)	854
AccB1I	GGYRCC	1 cut(s)	549
AclWI	GGATC	1 cut(s)	792
AcuI	CTGAAG	1 cut(s)	460
AcvI	CACGTG	1 cut(s)	848
AfaI	GTAC	3 cut(s)	377, 450, 596
AfiI	CCNNNNNNNGG	1 cut(s)	863
AgsI	TTSAA	6 cut(s)	19, 50, 117, 412, 800, 881
AjnI	CCWGG	2 cut(s)	607, 823
AjuI	GAANNNNNNNTTGG	2 cut(s)	666, 698
AluBI	AGCT	8 cut(s)	9, 133, 168, 234, 334, 419, 520, 722
AluI	AGCT	8 cut(s)	9, 133, 168, 234, 334, 419, 520, 722
Alw26I	GTCTC	5 cut(s)	178, 357, 581, 806, 879
AlwI	GGATC	1 cut(s)	792
Ama87I	CYCGRG	1 cut(s)	458
AoxI	GGCC	1 cut(s)	696
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AspS9I	GGNCC	2 cut(s)	241, 696
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	4, 128
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	549
BbrPI	CACGTG	1 cut(s)	848
BccI	CCATC	3 cut(s)	71, 89, 612
BciT130I	CCWGG	2 cut(s)	609, 825
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	5 cut(s)	178, 357, 581, 806, 879
BfaI	CTAG	3 cut(s)	644, 776, 893
BfmI	CTRYAG	1 cut(s)	420
BfuAI	ACCTGC	1 cut(s)	854
BmcAI	AGTACT	1 cut(s)	377
Bme1390I	CCNGG	3 cut(s)	257, 609, 825
Bme18I	GGWCC	1 cut(s)	241
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	241, 696
BmiI	GGNNCC	2 cut(s)	243, 551
BmrFI	CCNGG	3 cut(s)	257, 609, 825
BmsI	GCATC	1 cut(s)	477
BpmI	CTGGAG	1 cut(s)	277
BpuMI	CCSGG	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	848
BsaBI	GATNNNNATC	1 cut(s)	783
BsaJI	CCNNGG	1 cut(s)	660
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	863
Bse1I	ACTGG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	783
BseBI	CCWGG	2 cut(s)	609, 825
BseDI	CCNNGG	1 cut(s)	660
BseGI	GGATG	2 cut(s)	604, 740
BseJI	GATNNNNATC	1 cut(s)	783
BseLI	CCNNNNNNNGG	1 cut(s)	863
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	285
BseRI	GAGGAG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	698
BshNI	GGYRCC	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	863
BsmAI	GTCTC	5 cut(s)	178, 357, 581, 806, 879
BsmBI	CGTCTC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	698
BsoBI	CYCGRG	1 cut(s)	458
Bsp1407I	TGTACA	1 cut(s)	594
Bsp143I	GATC	2 cut(s)	146, 784
Bsp19I	CCATGG	1 cut(s)	660
BspANI	GGCC	1 cut(s)	698
BspCNI	CTCAG	1 cut(s)	222
BspHI	TCATGA	1 cut(s)	907
BspLI	GGNNCC	2 cut(s)	243, 551
BspMI	ACCTGC	1 cut(s)	854
BspPI	GGATC	1 cut(s)	792
BspT107I	GGYRCC	1 cut(s)	549
BsrGI	TGTACA	1 cut(s)	594
BsrI	ACTGG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	660
BssMI	GATC	2 cut(s)	146, 784
BssT1I	CCWWGG	1 cut(s)	660
Bst2UI	CCWGG	2 cut(s)	609, 825
Bst4CI	ACNGT	1 cut(s)	592
Bst6I	CTCTTC	1 cut(s)	51
BstAUI	TGTACA	1 cut(s)	594
BstBAI	YACGTR	1 cut(s)	848
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	3 cut(s)	230, 627, 745
BstDSI	CCRYGG	1 cut(s)	660
BstF5I	GGATG	2 cut(s)	604, 740
BstKTI	GATC	2 cut(s)	149, 787
BstMAI	GTCTC	5 cut(s)	178, 357, 581, 806, 879
BstMBI	GATC	2 cut(s)	146, 784
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNI	CCWGG	2 cut(s)	609, 825
BstSCI	CCNGG	3 cut(s)	255, 607, 823
BstSFI	CTRYAG	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	784
BstYI	RGATCY	1 cut(s)	784
BsuRI	GGCC	1 cut(s)	698
BtgI	CCRYGG	1 cut(s)	660
BtsCI	GGATG	2 cut(s)	604, 740
BtsI	GCAGTG	1 cut(s)	557
BtsIMutI	CAGTG	1 cut(s)	557
BveI	ACCTGC	1 cut(s)	854
Cac8I	GCNNGC	1 cut(s)	7
CciI	TCATGA	1 cut(s)	907
Cfr13I	GGNCC	2 cut(s)	241, 696
Csp6I	GTAC	3 cut(s)	376, 449, 595
CviAII	CATG	2 cut(s)	661, 908
CviQI	GTAC	3 cut(s)	376, 449, 595
DdeI	CTNAG	3 cut(s)	230, 627, 745
DpnI	GATC	2 cut(s)	148, 786
DpnII	GATC	2 cut(s)	146, 784
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	660
Eco32I	GATATC	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	460
Eco72I	CACGTG	1 cut(s)	848
Eco88I	CYCGRG	1 cut(s)	458
EcoRII	CCWGG	2 cut(s)	607, 823
EcoRV	GATATC	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	660
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	2 cut(s)	664, 911
FaiI	YATR	8 cut(s)	369, 422, 500, 568, 585, 662, 909, 928
FatI	CATG	2 cut(s)	660, 907
FokI	GGATG	2 cut(s)	591, 727
FspBI	CTAG	3 cut(s)	644, 776, 893
GsuI	CTGGAG	1 cut(s)	277
HaeIII	GGCC	1 cut(s)	698
HapII	CCGG	1 cut(s)	257
Hin1II	CATG	2 cut(s)	664, 911
HindIII	AAGCTT	2 cut(s)	7, 131
HinfI	GANTC	6 cut(s)	30, 87, 350, 749, 754, 820
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	2 cut(s)	4, 128
Hpy166II	GTNNAC	3 cut(s)	449, 595, 597
Hpy188I	TCNGA	5 cut(s)	35, 86, 163, 314, 470
Hpy188III	TCNNGA	8 cut(s)	239, 294, 616, 671, 727, 776, 878, 908
Hpy8I	GTNNAC	3 cut(s)	449, 595, 597
HpyAV	CCTTC	3 cut(s)	25, 123, 724
HpyCH4III	ACNGT	1 cut(s)	592
HpyCH4IV	ACGT	1 cut(s)	847
HpyCH4V	TGCA	3 cut(s)	490, 641, 869
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	3 cut(s)	230, 627, 745
HpySE526I	ACGT	1 cut(s)	847
Hsp92II	CATG	2 cut(s)	664, 911
Kzo9I	GATC	2 cut(s)	146, 784
LmnI	GCTCC	4 cut(s)	173, 296, 331, 767
LweI	GCATC	1 cut(s)	477
MaeI	CTAG	3 cut(s)	644, 776, 893
MaeII	ACGT	1 cut(s)	847
MaeIII	GTNAC	2 cut(s)	480, 512
MalI	GATC	2 cut(s)	148, 786
MboI	GATC	2 cut(s)	146, 784
MboII	GAAGA	5 cut(s)	38, 221, 587, 834, 881
MflI	RGATCY	1 cut(s)	784
MluCI	AATT	2 cut(s)	440, 801
MlyI	GAGTC	2 cut(s)	359, 743
MmeI	TCCRAC	4 cut(s)	132, 141, 552, 730
MnlI	CCTC	4 cut(s)	115, 308, 462, 642
MspA1I	CMGCKG	1 cut(s)	722
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	3 cut(s)	257, 609, 825
MvaI	CCWGG	2 cut(s)	609, 825
MwoI	GCNNNNNNNGC	1 cut(s)	425
NciI	CCSGG	1 cut(s)	257
NcoI	CCATGG	1 cut(s)	660
NdeII	GATC	2 cut(s)	146, 784
NlaIII	CATG	2 cut(s)	664, 911
NlaIV	GGNNCC	2 cut(s)	243, 551
NmuCI	GTSAC	1 cut(s)	480
PagI	TCATGA	1 cut(s)	907
PaqCI	CACCTGC	1 cut(s)	854
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	4 cut(s)	30, 87, 754, 820
PfoI	TCCNGGA	1 cut(s)	823
PleI	GAGTC	2 cut(s)	358, 743
PmaCI	CACGTG	1 cut(s)	848
PmlI	CACGTG	1 cut(s)	848
PpsI	GAGTC	2 cut(s)	358, 743
Ppu21I	YACGTR	1 cut(s)	848
PsiI	TTATAA	1 cut(s)	500
Psp6I	CCWGG	2 cut(s)	607, 823
PspCI	CACGTG	1 cut(s)	848
PspGI	CCWGG	2 cut(s)	607, 823
PspN4I	GGNNCC	2 cut(s)	243, 551
PspPI	GGNCC	2 cut(s)	241, 696
PsuI	RGATCY	1 cut(s)	784
PvuII	CAGCTG	1 cut(s)	722
RsaI	GTAC	3 cut(s)	377, 450, 596
RsaNI	GTAC	3 cut(s)	376, 449, 595
Sau3AI	GATC	2 cut(s)	146, 784
Sau96I	GGNCC	2 cut(s)	241, 696
ScaI	AGTACT	1 cut(s)	377
SchI	GAGTC	2 cut(s)	359, 743
ScrFI	CCNGG	3 cut(s)	257, 609, 825
SfaNI	GCATC	1 cut(s)	477
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	1 cut(s)	241
Sse9I	AATT	2 cut(s)	440, 801
SspMI	CTAG	3 cut(s)	644, 776, 893
StyD4I	CCNGG	3 cut(s)	255, 607, 823
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	1 cut(s)	592
TaiI	ACGT	1 cut(s)	850
TaqI	TCGA	3 cut(s)	145, 207, 752
TasI	AATT	2 cut(s)	440, 801
TatI	WGTACW	2 cut(s)	375, 594
TfiI	GAWTC	4 cut(s)	30, 87, 754, 820
TscAI	CASTG	1 cut(s)	564
TseFI	GTSAC	1 cut(s)	480
Tsp45I	GTSAC	1 cut(s)	480
TspDTI	ATGAA	1 cut(s)	453
TspGWI	ACGGA	3 cut(s)	145, 160, 284
TspRI	CASTG	1 cut(s)	564
VpaK11BI	GGWCC	1 cut(s)	241
XbaI	TCTAGA	1 cut(s)	775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XspI	CTAG	3 cut(s)	644, 776, 893
ZrmI	AGTACT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.