Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007180

Physical Location & Seq

Genomic Coordinates Forward (+)

36385549 .. 36388344

Gene Structure 2796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1308600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGTGGTGGAGAAATAACCGCATTAACCGTCTTTTCTTCTTCCCGCAAACTCTATCAGTTCAGTTCCTTACTGTCACTGCTTCCATGGCGAGCTTCAGCTTCAACACCACCAGAATCAGAACCCCCACCCTTCAATACCACAAACCCATCTCCAAGTTTGTCTACCGGGCAAAACCTATCAAAATCCCATCTCCTCTCTCCACCAATCCCTCAAAATCCCGGCCAAAACTCCGCTGTTTCCGTCCCAATTCCGTCTCGGAAAGCTCGGTTTCCACGACACAAGAAGCAGAGGAGGAGGAATTCGATGAAGTGGACGACGACCCGACGATGGAGCTGAGCTACCTCGACCCGGAAACCGACCCGGAGAGCATTTCGGAGTGGGAGCTGGACTTCTGCTCCAGGCCGATTTTGGATATCAGAGGGAAGAAGGTGTGGGAGCTGGTGGTTTGTGACGAATCGCTGTCTCTGCAGTTTACGAAATATTTTCCGAACAATGTTATCAACAGCATTACTTTGAAGGATGCTATTGTGTCCATTAGTGACGAATTAGGTGTCCCTCTGCCGGATAAAATCCGCTACTTCAGGTCACAGATGCAGACAATTATCACAAAAGCATGTAACGAGCTCGGTATAAAGCCTATTCCCAGTAAACGGTGCCTATCGCTGCTTTTGTGGTTGGAAGAACGCTATGAGACAGTATACACACGCCATCCTGGTTTCCAGAAAGGATCTAAGCCGCTCCTTGCATTGGATAACCCCTTCCCAATGGAACTTCCGGAAAATCTTGTTGGCGAGAAATGGGCCTTTGTTCAGTTGCCCTTTTCAGCTGTTCAAGAGGAAATCTCATCCTTAGACACGAACCTCGTGTTTGGCGCAAGTCTAGATTTGGATTTGTTGGGGATTGAAATTGATGAGAAGACTTTGATTCCAGGATTGGCAGTTGCATCTTCACGTGCAAAACCGCTCGCAGCTTGGATGAATGGGTTGGAAGTTTGCTCAATTGAAGTCGATTTGTCACGAGCTCGCTTGCTTCTTTCCGTTGGAATCTCTGGCCGATATATTTACGCCACCTACAACAAGACTCCTGAAACAACAAGTGAAGCTGAAGCTTGGGAAGCAGCAAAGAAGGATTGCGGAGGCTTGCACTTCCTTGCAATCCAGGGGGACTTGGACGGGGATGATTGTGTCGGATTTTGGCTTCTACTAGACTTGCCACCTCCACCTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009639 GO:0009640 GO:0009657 GO:0009658 GO:0009704 GO:0009791 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0019538 GO:0019684 GO:0022607 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048564 GO:0048856 GO:0050896 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1092

Protein Analysis

410

Amino Acids

46.18

Weight (kDa)

4.91

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tab2-like_N	PF06485	127 - 229	5.7e-33	RNA-binding protein Tab2/Atab2 N terminal
Tab2-like_C	PF20429	246 - 401	5.1e-45	RNA-binding protein Tab2/Atab2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08010
fragaria_vesca	FvH4_7g01190 FvH4_7g01190 FvH4_7g01190 FvH4_7g01190 FvH4_7g01190
malus_domestica	MD02G1308600.v1.1 MD07G1013000.v1.1
prunus_persica	Prupe.2G015400_v2.0.a1 Prupe.2G015400_v2.0.a1 Prupe.2G016000_v2.0.a1
pyrus_communis	pycom02g25990 pycom07g01060
rosa_chinensis	RchiOBHm_Chr1g0316521
rosa_laevigata	RLG00000030664
rosa_multiflora	Rmu_sc0002667.1_g000022 Rmu_sc0039061.1_g000001 Rmu_sc0039062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330930
rosa_rugosa	Rorug01G0011900
rosa_samantha	Rh1AG021400 Rh1BG016800 Rh1CG019400 Rh1DG016700
rosa_wichuraiana	Rw1G001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	654
AccBSI	CCGCTC	2 cut(s)	739, 964
AccI	GTMKAC	2 cut(s)	162, 699
AccIII	TCCGGA	1 cut(s)	775
AciI	CCGC	7 cut(s)	19, 44, 232, 574, 737, 962, 1134
AclWI	GGATC	1 cut(s)	736
AcoI	YGGCCR	2 cut(s)	221, 1051
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	3 cut(s)	79, 565, 1125
AcvI	CACGTG	1 cut(s)	953
AfiI	CCNNNNNNNGG	5 cut(s)	328, 349, 562, 651, 748
AgsI	TTSAA	6 cut(s)	103, 134, 517, 833, 905, 1004
AjnI	CCWGG	4 cut(s)	398, 712, 928, 1158
AjuI	GAANNNNNNNTTGG	2 cut(s)	771, 803
Alw21I	GWGCWC	2 cut(s)	627, 1024
Alw26I	GTCTC	3 cut(s)	259, 468, 686
AlwI	GGATC	1 cut(s)	736
Aor13HI	TCCGGA	1 cut(s)	775
AoxI	GGCC	4 cut(s)	221, 401, 801, 1051
ApeKI	GCWGC	3 cut(s)	664, 968, 1118
ApoI	RAATTY	1 cut(s)	299
ArsI	GACNNNNNNTTYG	2 cut(s)	537, 569
AspLEI	GCGC	1 cut(s)	875
AspS9I	GGNCC	1 cut(s)	801
AsuC2I	CCSGG	4 cut(s)	167, 220, 350, 362
BanI	GGYRCC	1 cut(s)	654
BanII	GRGCYC	2 cut(s)	627, 1024
BauI	CACGAG	2 cut(s)	863, 1017
BbrPI	CACGTG	1 cut(s)	953
BbsI	GAAGAC	1 cut(s)	923
Bbv12I	GWGCWC	2 cut(s)	627, 1024
BbvI	GCAGC	3 cut(s)	651, 980, 1130
BccI	CCATC	4 cut(s)	155, 196, 322, 717
BciT130I	CCWGG	4 cut(s)	400, 714, 930, 1160
BcnI	CCSGG	4 cut(s)	167, 220, 350, 362
BcoDI	GTCTC	3 cut(s)	259, 468, 686
BfaI	CTAG	2 cut(s)	881, 1205
BfmI	CTRYAG	1 cut(s)	467
BisI	GCNGC	4 cut(s)	665, 737, 969, 1119
BlpI	GCTNAGC	1 cut(s)	335
BlsI	GCNGC	4 cut(s)	666, 738, 970, 1120
Bme1390I	CCNGG	8 cut(s)	167, 220, 350, 362, 400, 714, 930, 1160
BmgT120I	GGNCC	1 cut(s)	801
BmiI	GGNNCC	1 cut(s)	656
BmrFI	CCNGG	8 cut(s)	167, 220, 350, 362, 400, 714, 930, 1160
BmrI	ACTGGG	1 cut(s)	639
BmsI	GCATC	3 cut(s)	511, 582, 953
BmuI	ACTGGG	1 cut(s)	639
BpiI	GAAGAC	1 cut(s)	923
BplI	GAGNNNNNCTC	2 cut(s)	827, 859
BpmI	CTGGAG	1 cut(s)	382
Bpu1102I	GCTNAGC	1 cut(s)	335
BpuMI	CCSGG	4 cut(s)	167, 220, 350, 362
BsaAI	YACGTR	1 cut(s)	953
BsaJI	CCNNGG	2 cut(s)	84, 1159
BsaWI	WCCGGW	1 cut(s)	775
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	5 cut(s)	328, 349, 562, 651, 748
Bse1I	ACTGG	1 cut(s)	645
BseAI	TCCGGA	1 cut(s)	775
BseBI	CCWGG	4 cut(s)	400, 714, 930, 1160
BseDI	CCNNGG	2 cut(s)	84, 1159
BseGI	GGATG	5 cut(s)	526, 709, 845, 981, 1183
BseLI	CCNNNNNNNGG	5 cut(s)	328, 349, 562, 651, 748
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	1 cut(s)	645
BseRI	GAGGAG	3 cut(s)	183, 305, 308
BseXI	GCAGC	3 cut(s)	651, 980, 1130
BshFI	GGCC	4 cut(s)	223, 403, 803, 1053
BshNI	GGYRCC	1 cut(s)	654
BsiHKAI	GWGCWC	2 cut(s)	627, 1024
BsiSI	CCGG	6 cut(s)	166, 220, 350, 362, 563, 776
BslFI	GGGAC	3 cut(s)	228, 539, 1178
BslI	CCNNNNNNNGG	5 cut(s)	328, 349, 562, 651, 748
BsmAI	GTCTC	3 cut(s)	259, 468, 686
BsmBI	CGTCTC	1 cut(s)	259
BsmFI	GGGAC	3 cut(s)	228, 539, 1178
BsnI	GGCC	4 cut(s)	223, 403, 803, 1053
Bsp1286I	GDGCHC	2 cut(s)	627, 1024
Bsp13I	TCCGGA	1 cut(s)	775
Bsp143I	GATC	1 cut(s)	728
Bsp1720I	GCTNAGC	1 cut(s)	335
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	7 cut(s)	19, 44, 232, 574, 737, 962, 1134
BspANI	GGCC	4 cut(s)	223, 403, 803, 1053
BspCNI	CTCAG	1 cut(s)	327
BspEI	TCCGGA	1 cut(s)	775
BspLI	GGNNCC	1 cut(s)	656
BspMAI	CTGCAG	1 cut(s)	471
BspPI	GGATC	1 cut(s)	736
BspT107I	GGYRCC	1 cut(s)	654
BsrBI	CCGCTC	2 cut(s)	739, 964
BsrI	ACTGG	1 cut(s)	645
BssECI	CCNNGG	2 cut(s)	84, 1159
BssMI	GATC	1 cut(s)	728
BssNAI	GTATAC	1 cut(s)	700
BssSI	CACGAG	2 cut(s)	863, 1017
BssT1I	CCWWGG	1 cut(s)	84
Bst1107I	GTATAC	1 cut(s)	700
Bst2BI	CACGAG	2 cut(s)	863, 1017
Bst2UI	CCWGG	4 cut(s)	400, 714, 930, 1160
Bst4CI	ACNGT	4 cut(s)	29, 73, 654, 697
BstBAI	YACGTR	1 cut(s)	953
BstC8I	GCNNGC	5 cut(s)	91, 966, 1024, 1028, 1142
BstDEI	CTNAG	3 cut(s)	335, 732, 850
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	5 cut(s)	526, 709, 845, 981, 1183
BstHHI	GCGC	1 cut(s)	875
BstKTI	GATC	1 cut(s)	731
BstMAI	GTCTC	3 cut(s)	259, 468, 686
BstMBI	GATC	1 cut(s)	728
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 466, 1115
BstNI	CCWGG	4 cut(s)	400, 714, 930, 1160
BstNSI	RCATGY	1 cut(s)	618
BstSCI	CCNGG	8 cut(s)	165, 218, 348, 360, 398, 712, 928, 1158
BstSFI	CTRYAG	1 cut(s)	467
BstV1I	GCAGC	3 cut(s)	651, 980, 1130
BstV2I	GAAGAC	1 cut(s)	923
BstX2I	RGATCY	1 cut(s)	728
BstYI	RGATCY	1 cut(s)	728
BstZ17I	GTATAC	1 cut(s)	700
BsuRI	GGCC	4 cut(s)	223, 403, 803, 1053
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	5 cut(s)	526, 709, 845, 981, 1183
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	5 cut(s)	91, 966, 1024, 1028, 1142
CfoI	GCGC	1 cut(s)	875
Cfr13I	GGNCC	1 cut(s)	801
CviAII	CATG	2 cut(s)	85, 615
DdeI	CTNAG	3 cut(s)	335, 732, 850
DpnI	GATC	1 cut(s)	730
DpnII	GATC	1 cut(s)	728
EaeI	YGGCCR	2 cut(s)	221, 1051
Ecl136II	GAGCTC	2 cut(s)	625, 1022
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	2 cut(s)	627, 1024
Eco32I	GATATC	1 cut(s)	415
Eco53kI	GAGCTC	2 cut(s)	625, 1022
Eco57I	CTGAAG	3 cut(s)	79, 565, 1125
Eco72I	CACGTG	1 cut(s)	953
EcoICRI	GAGCTC	2 cut(s)	625, 1022
EcoRI	GAATTC	1 cut(s)	299
EcoRII	CCWGG	4 cut(s)	398, 712, 928, 1158
EcoRV	GATATC	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	2 cut(s)	627, 1024
ErhI	CCWWGG	1 cut(s)	84
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	2 cut(s)	88, 618
FaiI	YATR	7 cut(s)	86, 616, 632, 690, 700, 1059, 1228
FaqI	GGGAC	3 cut(s)	228, 539, 1178
FatI	CATG	2 cut(s)	84, 614
FauI	CCCGC	1 cut(s)	51
FblI	GTMKAC	2 cut(s)	162, 699
Fnu4HI	GCNGC	4 cut(s)	665, 737, 969, 1119
FokI	GGATG	5 cut(s)	533, 696, 832, 988, 1190
FriOI	GRGCYC	2 cut(s)	627, 1024
Fsp4HI	GCNGC	4 cut(s)	665, 737, 969, 1119
FspBI	CTAG	2 cut(s)	881, 1205
GlaI	GCGC	1 cut(s)	874
GluI	GCNGC	4 cut(s)	665, 737, 969, 1119
GsuI	CTGGAG	1 cut(s)	382
HaeIII	GGCC	4 cut(s)	223, 403, 803, 1053
HapII	CCGG	6 cut(s)	166, 220, 350, 362, 563, 776
HhaI	GCGC	1 cut(s)	875
Hin1II	CATG	2 cut(s)	88, 618
Hin6I	GCGC	1 cut(s)	873
HinP1I	GCGC	1 cut(s)	873
HindIII	AAGCTT	1 cut(s)	1107
HinfI	GANTC	5 cut(s)	114, 455, 925, 1044, 1081
HpaII	CCGG	6 cut(s)	166, 220, 350, 362, 563, 776
Hpy166II	GTNNAC	5 cut(s)	163, 313, 474, 650, 700
Hpy188I	TCNGA	6 cut(s)	119, 259, 376, 419, 489, 1190
Hpy188III	TCNNGA	6 cut(s)	721, 776, 833, 881, 1017, 1085
Hpy8I	GTNNAC	5 cut(s)	163, 313, 474, 650, 700
Hpy99I	CGWCG	2 cut(s)	320, 328
HpyAV	CCTTC	5 cut(s)	140, 421, 511, 769, 1120
HpyCH4III	ACNGT	4 cut(s)	29, 73, 654, 697
HpyCH4IV	ACGT	1 cut(s)	952
HpyCH4V	TGCA	7 cut(s)	469, 595, 746, 944, 956, 1144, 1154
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 466, 1115
HpyF3I	CTNAG	3 cut(s)	335, 732, 850
HpySE526I	ACGT	1 cut(s)	952
Hsp92II	CATG	2 cut(s)	88, 618
HspAI	GCGC	1 cut(s)	873
Kpn2I	TCCGGA	1 cut(s)	775
Kzo9I	GATC	1 cut(s)	728
LmnI	GCTCC	5 cut(s)	331, 382, 401, 436, 744
Lsp1109I	GCAGC	3 cut(s)	651, 980, 1130
LweI	GCATC	3 cut(s)	511, 582, 953
MaeI	CTAG	2 cut(s)	881, 1205
MaeII	ACGT	1 cut(s)	952
MaeIII	GTNAC	6 cut(s)	73, 449, 539, 585, 617, 1014
MalI	GATC	1 cut(s)	730
MbiI	CCGCTC	2 cut(s)	739, 964
MboI	GATC	1 cut(s)	728
MboII	GAAGA	6 cut(s)	28, 31, 436, 692, 928, 939
MfeI	CAATTG	1 cut(s)	999
MflI	RGATCY	1 cut(s)	728
MhlI	GDGCHC	2 cut(s)	627, 1024
MluCI	AATT	6 cut(s)	247, 299, 545, 600, 906, 999
MlyI	GAGTC	1 cut(s)	1075
MmeI	TCCRAC	4 cut(s)	657, 966, 1021, 1168
MroI	TCCGGA	1 cut(s)	775
MseI	TTAA	1 cut(s)	24
MspA1I	CMGCKG	2 cut(s)	234, 827
MspI	CCGG	6 cut(s)	166, 220, 350, 362, 563, 776
MspR9I	CCNGG	8 cut(s)	167, 220, 350, 362, 400, 714, 930, 1160
MunI	CAATTG	1 cut(s)	999
MvaI	CCWGG	4 cut(s)	400, 714, 930, 1160
MwoI	GCNNNNNNNGC	3 cut(s)	86, 466, 1115
NciI	CCSGG	4 cut(s)	167, 220, 350, 362
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	1 cut(s)	728
NlaIII	CATG	2 cut(s)	88, 618
NlaIV	GGNNCC	1 cut(s)	656
NmuCI	GTSAC	5 cut(s)	73, 449, 539, 585, 1014
NspI	RCATGY	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	1 cut(s)	272
PfeI	GAWTC	4 cut(s)	114, 455, 925, 1044
PfoI	TCCNGGA	1 cut(s)	928
PkrI	GCNGC	4 cut(s)	666, 738, 970, 1120
PleI	GAGTC	1 cut(s)	1075
PmaCI	CACGTG	1 cut(s)	953
PmlI	CACGTG	1 cut(s)	953
PpsI	GAGTC	1 cut(s)	1075
Ppu21I	YACGTR	1 cut(s)	953
Psp124BI	GAGCTC	2 cut(s)	627, 1024
Psp6I	CCWGG	4 cut(s)	398, 712, 928, 1158
PspCI	CACGTG	1 cut(s)	953
PspGI	CCWGG	4 cut(s)	398, 712, 928, 1158
PspN4I	GGNNCC	1 cut(s)	656
PspPI	GGNCC	1 cut(s)	801
PstI	CTGCAG	1 cut(s)	471
PsuI	RGATCY	1 cut(s)	728
PvuII	CAGCTG	1 cut(s)	827
SacI	GAGCTC	2 cut(s)	627, 1024
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	4 cut(s)	665, 737, 969, 1119
Sau3AI	GATC	1 cut(s)	728
Sau96I	GGNCC	1 cut(s)	801
SchI	GAGTC	1 cut(s)	1075
ScrFI	CCNGG	8 cut(s)	167, 220, 350, 362, 400, 714, 930, 1160
SduI	GDGCHC	2 cut(s)	627, 1024
SfaNI	GCATC	3 cut(s)	511, 582, 953
SfcI	CTRYAG	1 cut(s)	467
Sse9I	AATT	6 cut(s)	247, 299, 545, 600, 906, 999
SsiI	CCGC	7 cut(s)	19, 44, 232, 574, 737, 962, 1134
SspI	AATATT	1 cut(s)	482
SspMI	CTAG	2 cut(s)	881, 1205
SstI	GAGCTC	2 cut(s)	627, 1024
StyD4I	CCNGG	8 cut(s)	165, 218, 348, 360, 398, 712, 928, 1158
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	4 cut(s)	29, 73, 654, 697
TaiI	ACGT	1 cut(s)	955
TaqI	TCGA	3 cut(s)	303, 345, 1008
TasI	AATT	6 cut(s)	247, 299, 545, 600, 906, 999
TauI	GCSGC	1 cut(s)	739
TfiI	GAWTC	4 cut(s)	114, 455, 925, 1044
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	5 cut(s)	73, 449, 539, 585, 1014
TseI	GCWGC	3 cut(s)	664, 968, 1118
Tsp45I	GTSAC	5 cut(s)	73, 449, 539, 585, 1014
TspDTI	ATGAA	2 cut(s)	321, 992
TspGWI	ACGGA	3 cut(s)	230, 241, 1027
TspRI	CASTG	1 cut(s)	82
XapI	RAATTY	1 cut(s)	299
XbaI	TCTAGA	1 cut(s)	880
XceI	RCATGY	1 cut(s)	618
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XmiI	GTMKAC	2 cut(s)	162, 699
XspI	CTAG	2 cut(s)	881, 1205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.