Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007180

Physical Location & Seq

Genomic Coordinates Forward (+)

1482810 .. 1484878

Gene Structure 2069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G016000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTCACTTGGGAATGGTTCAATTCGTATGATTGCGTTTTGTTCAATGGATTATAGGTCACAGATGCAGACAATTATAACAAAAGCGTGCAACGAGCTTGGTATAAAACCCATTCCCAGTAAACGGTGTCTCTCGTTACTTTTATGGTTGGAAGAACGCTACGAGACTGTATACACACGCCATCCTGGTTTCCAGAAAGGATCTAAGCCACTCCTTGCAGTAGATAACCCATTCCCAATGGAACTTCCAGAAAATCTTGTTGGGGAGAAATGGGCCTTTGTCCAATTGCCCTTTTCAGCTGTTCAAGAGGAAATCTCATCCTTGGACTCAAACCTCGTGTTTGGTGCGAGTCTAGATTTGGATTTGTTGGGGATTGAAATTGACGACAAGACATTGATTCCAGGATTGGCTGTTGCATCTTCACCTTGGATGAATGGGTTGGAAGTTTGTTCAATTGAAGCCGATTTGTCACGGGCTCGCTTGATTCTTTCTGTTGGAATTTCTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009639 GO:0009640 GO:0009657 GO:0009658 GO:0009704 GO:0009791 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0019538 GO:0019684 GO:0022607 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048564 GO:0048856 GO:0050896 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1092

Protein Analysis

170

Amino Acids

18.59

Weight (kDa)

4.79

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08010
fragaria_vesca	FvH4_7g01190 FvH4_7g01190 FvH4_7g01190 FvH4_7g01190 FvH4_7g01190
malus_domestica	MD02G1308600.v1.1 MD07G1013000.v1.1
prunus_persica	Prupe.2G015400_v2.0.a1 Prupe.2G015400_v2.0.a1 Prupe.2G016000_v2.0.a1
pyrus_communis	pycom02g25990 pycom07g01060
rosa_chinensis	RchiOBHm_Chr1g0316521
rosa_laevigata	RLG00000030664
rosa_multiflora	Rmu_sc0002667.1_g000022 Rmu_sc0039061.1_g000001 Rmu_sc0039062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330930
rosa_rugosa	Rorug01G0011900
rosa_samantha	Rh1AG021400 Rh1BG016800 Rh1CG019400 Rh1DG016700
rosa_wichuraiana	Rw1G001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	171
AclWI	GGATC	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	498
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	6 cut(s)	21, 45, 305, 377, 453, 458
AjnI	CCWGG	2 cut(s)	184, 400
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	2 cut(s)	97, 299
AluI	AGCT	2 cut(s)	97, 299
Alw26I	GTCTC	2 cut(s)	134, 158
AlwI	GGATC	1 cut(s)	208
AoxI	GGCC	1 cut(s)	273
ApoI	RAATTY	1 cut(s)	498
AspS9I	GGNCC	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	478
BauI	CACGAG	1 cut(s)	335
BccI	CCATC	1 cut(s)	189
BciT130I	CCWGG	2 cut(s)	186, 402
BcoDI	GTCTC	2 cut(s)	134, 158
BfaI	CTAG	1 cut(s)	353
Bme1390I	CCNGG	2 cut(s)	186, 402
BmgT120I	GGNCC	1 cut(s)	273
BmrFI	CCNGG	2 cut(s)	186, 402
BmrI	ACTGGG	1 cut(s)	111
BmsI	GCATC	2 cut(s)	54, 425
BmuI	ACTGGG	1 cut(s)	111
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
BsaJI	CCNNGG	2 cut(s)	321, 425
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse1I	ACTGG	1 cut(s)	117
BseBI	CCWGG	2 cut(s)	186, 402
BseDI	CCNNGG	2 cut(s)	321, 425
BseGI	GGATG	3 cut(s)	181, 317, 435
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	2 cut(s)	134, 158
BsnI	GGCC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp143I	GATC	1 cut(s)	200
BspANI	GGCC	1 cut(s)	275
BspPI	GGATC	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	321, 425
BssMI	GATC	1 cut(s)	200
BssNAI	GTATAC	1 cut(s)	172
BssSI	CACGAG	1 cut(s)	335
BssT1I	CCWWGG	2 cut(s)	321, 425
Bst1107I	GTATAC	1 cut(s)	172
Bst2BI	CACGAG	1 cut(s)	335
Bst2UI	CCWGG	2 cut(s)	186, 402
Bst4CI	ACNGT	2 cut(s)	126, 169
BstC8I	GCNNGC	2 cut(s)	88, 478
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	3 cut(s)	181, 317, 435
BstKTI	GATC	1 cut(s)	203
BstMAI	GTCTC	2 cut(s)	134, 158
BstMBI	GATC	1 cut(s)	200
BstNI	CCWGG	2 cut(s)	186, 402
BstSCI	CCNGG	2 cut(s)	184, 400
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
BstZ17I	GTATAC	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	275
BtsCI	GGATG	3 cut(s)	181, 317, 435
Cac8I	GCNNGC	2 cut(s)	88, 478
Cfr13I	GGNCC	1 cut(s)	273
CviJI	RGCY	7 cut(s)	97, 208, 275, 299, 410, 461, 476
CviKI_1	RGCY	7 cut(s)	97, 208, 275, 299, 410, 461, 476
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	202
DpnII	GATC	1 cut(s)	200
Eco130I	CCWWGG	2 cut(s)	321, 425
Eco24I	GRGCYC	1 cut(s)	478
EcoRII	CCWGG	2 cut(s)	184, 400
EcoT14I	CCWWGG	2 cut(s)	321, 425
EcoT38I	GRGCYC	1 cut(s)	478
ErhI	CCWWGG	2 cut(s)	321, 425
FaiI	YATR	6 cut(s)	29, 54, 77, 104, 145, 172
FblI	GTMKAC	1 cut(s)	171
FokI	GGATG	3 cut(s)	168, 304, 442
FriOI	GRGCYC	1 cut(s)	478
FspBI	CTAG	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	275
HinfI	GANTC	4 cut(s)	326, 349, 397, 484
HphI	GGTGA	1 cut(s)	414
Hpy166II	GTNNAC	2 cut(s)	122, 172
Hpy188III	TCNNGA	5 cut(s)	193, 248, 305, 353, 504
Hpy8I	GTNNAC	2 cut(s)	122, 172
HpyCH4III	ACNGT	2 cut(s)	126, 169
HpyCH4V	TGCA	4 cut(s)	67, 90, 218, 416
HpyF3I	CTNAG	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	200
LpnPI	CCDG	8 cut(s)	130, 171, 198, 206, 261, 387, 414, 489
LweI	GCATC	2 cut(s)	54, 425
MaeI	CTAG	1 cut(s)	353
MaeIII	GTNAC	4 cut(s)	3, 57, 135, 468
MalI	GATC	1 cut(s)	202
MboI	GATC	1 cut(s)	200
MboII	GAAGA	2 cut(s)	164, 411
MfeI	CAATTG	2 cut(s)	284, 453
MflI	RGATCY	1 cut(s)	200
MhlI	GDGCHC	1 cut(s)	478
MluCI	AATT	6 cut(s)	21, 72, 284, 378, 453, 498
MlyI	GAGTC	2 cut(s)	320, 358
MmeI	TCCRAC	3 cut(s)	129, 420, 475
MnlI	CCTC	2 cut(s)	301, 344
MspA1I	CMGCKG	1 cut(s)	299
MspR9I	CCNGG	2 cut(s)	186, 402
MunI	CAATTG	2 cut(s)	284, 453
MvaI	CCWGG	2 cut(s)	186, 402
NdeII	GATC	1 cut(s)	200
NmuCI	GTSAC	3 cut(s)	3, 57, 468
PfeI	GAWTC	2 cut(s)	397, 484
PfoI	TCCNGGA	1 cut(s)	400
PleI	GAGTC	2 cut(s)	320, 357
PpsI	GAGTC	2 cut(s)	320, 357
PsiI	TTATAA	1 cut(s)	77
Psp6I	CCWGG	2 cut(s)	184, 400
PspGI	CCWGG	2 cut(s)	184, 400
PspPI	GGNCC	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	200
PvuII	CAGCTG	1 cut(s)	299
Sau3AI	GATC	1 cut(s)	200
Sau96I	GGNCC	1 cut(s)	273
SchI	GAGTC	2 cut(s)	320, 358
ScrFI	CCNGG	2 cut(s)	186, 402
SduI	GDGCHC	1 cut(s)	478
SetI	ASST	5 cut(s)	59, 99, 301, 336, 427
SfaNI	GCATC	2 cut(s)	54, 425
Sse9I	AATT	6 cut(s)	21, 72, 284, 378, 453, 498
SspMI	CTAG	1 cut(s)	353
StyD4I	CCNGG	2 cut(s)	184, 400
StyI	CCWWGG	2 cut(s)	321, 425
TaaI	ACNGT	2 cut(s)	126, 169
TasI	AATT	6 cut(s)	21, 72, 284, 378, 453, 498
TfiI	GAWTC	2 cut(s)	397, 484
TseFI	GTSAC	3 cut(s)	3, 57, 468
Tsp45I	GTSAC	3 cut(s)	3, 57, 468
TspDTI	ATGAA	1 cut(s)	446
XapI	RAATTY	1 cut(s)	498
XbaI	TCTAGA	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	171
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.