Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007180

Physical Location & Seq

Genomic Coordinates Forward (+)

1148165 .. 1150810

Gene Structure 2646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1013000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGCGAGCTTCAGCTTCAACACCACCAGAATCAGAACCCCCACCCTTCACTCTCACAAACCCATCTCCAAATTCATCTCCCGCGTAAACCCCATCAAAATCCCATCTCCTCTCTTCACCAATCCCTCAAAACCCCGGCCAAAACTCCGCTGTTTCCGACCCAATTCCGTCTCGGAAAGCTCTGTTTCCACGACACAAGAAGCAGAGGAGGAGGAATTCGATGAATTGGACGATGACCCGACGGCGGAGCTGAGCTACCTCGACCCAGAAACCGACCCGGAGAGCATTTCGGAGTGGGAGCTGGATTTCTGCTCGAGGCCGATTTTGGATATCAGGGGGAAGAAGGTGTGGGAGCTGGTAGTGTGTGACGAATCGCTGTCTCTGCAGTTTACAAAGTATTTTCCGAACAATGTTATCAACAGCATTACTTTGAAGGATGCTATTGTGTCCATTAGTGACGAATTAGGCGTCCCTCTGCCGGATAAAATCCGCTACTTCAGGTCACAGATGCAGACAATTATCACAAAGGCATGTAACGAGCTTGGTATAAAGCCGATTCCCAGTAAACGGTGCCTATCGCTGCTTTTGTGGTTGGAAGAACGCTACGAGACAGTATACACACGCCATCCTGGTTTCCAGAAAGGATCTAAGCCGCTCCTGGCATTGGATAACCCTTTCCCAATGGAACTTCCGGAAAATCTTGTTGGCGAGAAATGGGCCTTTGTTCAGTTGCCCTTTTCAGCTGTTCAAGAGGAAATCTCATCCTTAGACACGAACCTCGTGTTTGGCGCAAGTCTAGATCTGGATTTGTTGGGGATTGAAATTGACGAGAAGACATTGATTCCAGGATTGGCTGTTGCATCTTCACGTGCAAAACCGCTAGCAGCTTGGATGAATGGGTTGGAAGTTTGCTCTATTGAAGTCGATTTGTCACGGGCACGCTTGCTACTTTCTGTCGGGATCTCTGGCCGATATATTTACGCCACCTACAATAAAACTCCTGAAACAAGAAGTGAAGCCGAAGCTTGGGAAGCAGCAAAGAAGGATTGTGGAGGCTTGCACTTCCTTGCAATCCAGGGGGACTTGGACGGTGATGATTGTGTCGGATTTTGGCTTCTGCTGGACTTGCCACCTCCACCTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009639 GO:0009640 GO:0009657 GO:0009658 GO:0009704 GO:0009791 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0019538 GO:0019684 GO:0022607 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048564 GO:0048856 GO:0050896 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1092

Protein Analysis

382

Amino Acids

42.69

Weight (kDa)

4.81

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tab2-like_N	PF06485	99 - 201	5e-33	RNA-binding protein Tab2/Atab2 N terminal
Tab2-like_C	PF20429	218 - 373	4.8e-45	RNA-binding protein Tab2/Atab2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08010
fragaria_vesca	FvH4_7g01190 FvH4_7g01190 FvH4_7g01190 FvH4_7g01190 FvH4_7g01190
malus_domestica	MD02G1308600.v1.1 MD07G1013000.v1.1
prunus_persica	Prupe.2G015400_v2.0.a1 Prupe.2G015400_v2.0.a1 Prupe.2G016000_v2.0.a1
pyrus_communis	pycom02g25990 pycom07g01060
rosa_chinensis	RchiOBHm_Chr1g0316521
rosa_laevigata	RLG00000030664
rosa_multiflora	Rmu_sc0002667.1_g000022 Rmu_sc0039061.1_g000001 Rmu_sc0039062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330930
rosa_rugosa	Rorug01G0011900
rosa_samantha	Rh1AG021400 Rh1BG016800 Rh1CG019400 Rh1DG016700
rosa_wichuraiana	Rw1G001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	570
AccBSI	CCGCTC	1 cut(s)	655
AccI	GTMKAC	1 cut(s)	615
AccII	CGCG	1 cut(s)	84
AccIII	TCCGGA	1 cut(s)	691
AciI	CCGC	6 cut(s)	82, 148, 245, 490, 653, 878
AclWI	GGATC	2 cut(s)	652, 968
AcoI	YGGCCR	2 cut(s)	137, 967
AcsI	RAATTY	2 cut(s)	71, 215
AcuI	CTGAAG	1 cut(s)	481
AcvI	CACGTG	1 cut(s)	869
AcyI	GRCGYC	1 cut(s)	468
AfiI	CCNNNNNNNGG	5 cut(s)	244, 478, 567, 664, 1026
AgsI	TTSAA	5 cut(s)	19, 433, 749, 821, 920
AjnI	CCWGG	4 cut(s)	628, 657, 844, 1074
AjuI	GAANNNNNNNTTGG	2 cut(s)	687, 719
Alw26I	GTCTC	3 cut(s)	175, 384, 602
AlwI	GGATC	2 cut(s)	652, 968
Ama87I	CYCGRG	1 cut(s)	313
Aor13HI	TCCGGA	1 cut(s)	691
AoxI	GGCC	4 cut(s)	137, 317, 717, 967
ApeKI	GCWGC	3 cut(s)	580, 884, 1034
ApoI	RAATTY	2 cut(s)	71, 215
ArsI	GACNNNNNNTTYG	2 cut(s)	453, 485
AspLEI	GCGC	1 cut(s)	791
AspS9I	GGNCC	1 cut(s)	717
AsuC2I	CCSGG	2 cut(s)	136, 278
AsuHPI	GGTGA	2 cut(s)	109, 1103
AsuNHI	GCTAGC	1 cut(s)	880
AvaI	CYCGRG	1 cut(s)	313
BaeGI	GKGCMC	1 cut(s)	940
BanI	GGYRCC	1 cut(s)	570
BauI	CACGAG	1 cut(s)	779
BbrPI	CACGTG	1 cut(s)	869
BbsI	GAAGAC	1 cut(s)	839
BbvI	GCAGC	3 cut(s)	567, 896, 1046
BccI	CCATC	4 cut(s)	71, 101, 112, 633
BceAI	ACGGC	1 cut(s)	258
BciT130I	CCWGG	4 cut(s)	630, 659, 846, 1076
BcnI	CCSGG	2 cut(s)	136, 278
BcoDI	GTCTC	3 cut(s)	175, 384, 602
BfaI	CTAG	2 cut(s)	797, 881
BfmI	CTRYAG	1 cut(s)	383
BglII	AGATCT	1 cut(s)	799
BisI	GCNGC	4 cut(s)	581, 653, 885, 1035
BlpI	GCTNAGC	1 cut(s)	251
BlsI	GCNGC	4 cut(s)	582, 654, 886, 1036
Bme1390I	CCNGG	6 cut(s)	136, 278, 630, 659, 846, 1076
BmeT110I	CYCGRG	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	717
BmiI	GGNNCC	1 cut(s)	572
BmrFI	CCNGG	6 cut(s)	136, 278, 630, 659, 846, 1076
BmrI	ACTGGG	1 cut(s)	555
BmsI	GCATC	3 cut(s)	427, 498, 869
BmtI	GCTAGC	1 cut(s)	884
BmuI	ACTGGG	1 cut(s)	555
BpiI	GAAGAC	1 cut(s)	839
BplI	GAGNNNNNCTC	2 cut(s)	743, 775
Bpu1102I	GCTNAGC	1 cut(s)	251
BpuMI	CCSGG	2 cut(s)	136, 278
BsaAI	YACGTR	1 cut(s)	869
BsaHI	GRCGYC	1 cut(s)	468
BsaJI	CCNNGG	2 cut(s)	134, 1075
BsaWI	WCCGGW	1 cut(s)	691
Bsc4I	CCNNNNNNNGG	5 cut(s)	244, 478, 567, 664, 1026
Bse1I	ACTGG	1 cut(s)	561
BseAI	TCCGGA	1 cut(s)	691
BseBI	CCWGG	4 cut(s)	630, 659, 846, 1076
BseDI	CCNNGG	2 cut(s)	134, 1075
BseGI	GGATG	4 cut(s)	442, 625, 761, 897
BseLI	CCNNNNNNNGG	5 cut(s)	244, 478, 567, 664, 1026
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	561
BseRI	GAGGAG	3 cut(s)	99, 221, 224
BseSI	GKGCMC	1 cut(s)	940
BseXI	GCAGC	3 cut(s)	567, 896, 1046
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	4 cut(s)	139, 319, 719, 969
BshNI	GGYRCC	1 cut(s)	570
BsiHKCI	CYCGRG	1 cut(s)	313
BsiSI	CCGG	4 cut(s)	136, 278, 479, 692
BslFI	GGGAC	2 cut(s)	455, 1094
BslI	CCNNNNNNNGG	5 cut(s)	244, 478, 567, 664, 1026
BsmAI	GTCTC	3 cut(s)	175, 384, 602
BsmBI	CGTCTC	1 cut(s)	175
BsmFI	GGGAC	2 cut(s)	455, 1094
BsnI	GGCC	4 cut(s)	139, 319, 719, 969
BsoBI	CYCGRG	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	940
Bsp13I	TCCGGA	1 cut(s)	691
Bsp143I	GATC	3 cut(s)	644, 799, 960
Bsp1720I	GCTNAGC	1 cut(s)	251
BspACI	CCGC	6 cut(s)	82, 148, 245, 490, 653, 878
BspANI	GGCC	4 cut(s)	139, 319, 719, 969
BspCNI	CTCAG	1 cut(s)	243
BspEI	TCCGGA	1 cut(s)	691
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	572
BspMAI	CTGCAG	1 cut(s)	387
BspOI	GCTAGC	1 cut(s)	884
BspPI	GGATC	2 cut(s)	652, 968
BspT107I	GGYRCC	1 cut(s)	570
BsrBI	CCGCTC	1 cut(s)	655
BsrI	ACTGG	1 cut(s)	561
BssECI	CCNNGG	2 cut(s)	134, 1075
BssMI	GATC	3 cut(s)	644, 799, 960
BssNAI	GTATAC	1 cut(s)	616
BssNI	GRCGYC	1 cut(s)	468
BssSI	CACGAG	1 cut(s)	779
Bst1107I	GTATAC	1 cut(s)	616
Bst2BI	CACGAG	1 cut(s)	779
Bst2UI	CCWGG	4 cut(s)	630, 659, 846, 1076
Bst4CI	ACNGT	3 cut(s)	570, 613, 1091
Bst6I	CTCTTC	1 cut(s)	119
BstACI	GRCGYC	1 cut(s)	468
BstBAI	YACGTR	1 cut(s)	869
BstC8I	GCNNGC	5 cut(s)	7, 882, 940, 944, 1058
BstDEI	CTNAG	3 cut(s)	251, 648, 766
BstF5I	GGATG	4 cut(s)	442, 625, 761, 897
BstFNI	CGCG	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	791
BstKTI	GATC	3 cut(s)	647, 802, 963
BstMAI	GTCTC	3 cut(s)	175, 384, 602
BstMBI	GATC	3 cut(s)	644, 799, 960
BstMWI	GCNNNNNNNGC	3 cut(s)	382, 1031, 1126
BstNI	CCWGG	4 cut(s)	630, 659, 846, 1076
BstNSI	RCATGY	1 cut(s)	534
BstSCI	CCNGG	6 cut(s)	134, 276, 628, 657, 844, 1074
BstSFI	CTRYAG	1 cut(s)	383
BstSLI	GKGCMC	1 cut(s)	940
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	3 cut(s)	567, 896, 1046
BstV2I	GAAGAC	1 cut(s)	839
BstX2I	RGATCY	3 cut(s)	644, 799, 960
BstYI	RGATCY	3 cut(s)	644, 799, 960
BstZ17I	GTATAC	1 cut(s)	616
BsuRI	GGCC	4 cut(s)	139, 319, 719, 969
BtsCI	GGATG	4 cut(s)	442, 625, 761, 897
Cac8I	GCNNGC	5 cut(s)	7, 882, 940, 944, 1058
CfoI	GCGC	1 cut(s)	791
Cfr13I	GGNCC	1 cut(s)	717
CseI	GACGC	1 cut(s)	457
CviAII	CATG	1 cut(s)	531
DdeI	CTNAG	3 cut(s)	251, 648, 766
DpnI	GATC	3 cut(s)	646, 801, 962
DpnII	GATC	3 cut(s)	644, 799, 960
EaeI	YGGCCR	2 cut(s)	137, 967
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EciI	GGCGGA	1 cut(s)	260
Eco32I	GATATC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	481
Eco72I	CACGTG	1 cut(s)	869
Eco88I	CYCGRG	1 cut(s)	313
EcoRI	GAATTC	1 cut(s)	215
EcoRII	CCWGG	4 cut(s)	628, 657, 844, 1074
EcoRV	GATATC	1 cut(s)	331
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	1 cut(s)	534
FaiI	YATR	5 cut(s)	532, 548, 616, 975, 1144
FaqI	GGGAC	2 cut(s)	455, 1094
FatI	CATG	1 cut(s)	530
FauI	CCCGC	1 cut(s)	89
FblI	GTMKAC	1 cut(s)	615
Fnu4HI	GCNGC	4 cut(s)	581, 653, 885, 1035
FokI	GGATG	4 cut(s)	449, 612, 748, 904
Fsp4HI	GCNGC	4 cut(s)	581, 653, 885, 1035
FspBI	CTAG	2 cut(s)	797, 881
GlaI	GCGC	1 cut(s)	790
GluI	GCNGC	4 cut(s)	581, 653, 885, 1035
HaeIII	GGCC	4 cut(s)	139, 319, 719, 969
HapII	CCGG	4 cut(s)	136, 278, 479, 692
HgaI	GACGC	1 cut(s)	457
HhaI	GCGC	1 cut(s)	791
Hin1I	GRCGYC	1 cut(s)	468
Hin1II	CATG	1 cut(s)	534
Hin6I	GCGC	1 cut(s)	789
HinP1I	GCGC	1 cut(s)	789
HindIII	AAGCTT	1 cut(s)	1023
HinfI	GANTC	4 cut(s)	30, 371, 556, 841
HpaII	CCGG	4 cut(s)	136, 278, 479, 692
HphI	GGTGA	2 cut(s)	109, 1103
Hpy166II	GTNNAC	4 cut(s)	88, 390, 566, 616
Hpy188I	TCNGA	6 cut(s)	35, 158, 175, 292, 405, 1106
Hpy188III	TCNNGA	7 cut(s)	637, 692, 749, 797, 803, 958, 1001
Hpy8I	GTNNAC	4 cut(s)	88, 390, 566, 616
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	4 cut(s)	56, 337, 427, 1036
HpyCH4III	ACNGT	3 cut(s)	570, 613, 1091
HpyCH4IV	ACGT	1 cut(s)	868
HpyCH4V	TGCA	6 cut(s)	385, 511, 860, 872, 1060, 1070
HpyF10VI	GCNNNNNNNGC	3 cut(s)	382, 1031, 1126
HpyF3I	CTNAG	3 cut(s)	251, 648, 766
HpySE526I	ACGT	1 cut(s)	868
Hsp92I	GRCGYC	1 cut(s)	468
Hsp92II	CATG	1 cut(s)	534
HspAI	GCGC	1 cut(s)	789
Kpn2I	TCCGGA	1 cut(s)	691
Kzo9I	GATC	3 cut(s)	644, 799, 960
LmnI	GCTCC	4 cut(s)	247, 298, 352, 660
Lsp1109I	GCAGC	3 cut(s)	567, 896, 1046
LweI	GCATC	3 cut(s)	427, 498, 869
MaeI	CTAG	2 cut(s)	797, 881
MaeII	ACGT	1 cut(s)	868
MaeIII	GTNAC	5 cut(s)	365, 455, 501, 533, 930
MalI	GATC	3 cut(s)	646, 801, 962
MbiI	CCGCTC	1 cut(s)	655
MboI	GATC	3 cut(s)	644, 799, 960
MboII	GAAGA	5 cut(s)	106, 352, 608, 844, 855
MflI	RGATCY	3 cut(s)	644, 799, 960
MhlI	GDGCHC	1 cut(s)	940
MluCI	AATT	7 cut(s)	71, 163, 215, 224, 461, 516, 822
MmeI	TCCRAC	4 cut(s)	181, 573, 882, 1084
MroI	TCCGGA	1 cut(s)	691
MspA1I	CMGCKG	2 cut(s)	150, 743
MspI	CCGG	4 cut(s)	136, 278, 479, 692
MspR9I	CCNGG	6 cut(s)	136, 278, 630, 659, 846, 1076
MvaI	CCWGG	4 cut(s)	630, 659, 846, 1076
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	3 cut(s)	382, 1031, 1126
NciI	CCSGG	2 cut(s)	136, 278
NdeII	GATC	3 cut(s)	644, 799, 960
NheI	GCTAGC	1 cut(s)	880
NlaIII	CATG	1 cut(s)	534
NlaIV	GGNNCC	1 cut(s)	572
NmuCI	GTSAC	4 cut(s)	365, 455, 501, 930
NspI	RCATGY	1 cut(s)	534
PaeR7I	CTCGAG	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PfeI	GAWTC	4 cut(s)	30, 371, 556, 841
PfoI	TCCNGGA	1 cut(s)	844
PkrI	GCNGC	4 cut(s)	582, 654, 886, 1036
PmaCI	CACGTG	1 cut(s)	869
PmlI	CACGTG	1 cut(s)	869
Ppu21I	YACGTR	1 cut(s)	869
Psp6I	CCWGG	4 cut(s)	628, 657, 844, 1074
PspCI	CACGTG	1 cut(s)	869
PspGI	CCWGG	4 cut(s)	628, 657, 844, 1074
PspN4I	GGNNCC	1 cut(s)	572
PspPI	GGNCC	1 cut(s)	717
PspXI	VCTCGAGB	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	387
PsuI	RGATCY	3 cut(s)	644, 799, 960
PvuII	CAGCTG	1 cut(s)	743
SatI	GCNGC	4 cut(s)	581, 653, 885, 1035
Sau3AI	GATC	3 cut(s)	644, 799, 960
Sau96I	GGNCC	1 cut(s)	717
ScrFI	CCNGG	6 cut(s)	136, 278, 630, 659, 846, 1076
SduI	GDGCHC	1 cut(s)	940
SfaNI	GCATC	3 cut(s)	427, 498, 869
SfcI	CTRYAG	1 cut(s)	383
Sfr274I	CTCGAG	1 cut(s)	313
SlaI	CTCGAG	1 cut(s)	313
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	7 cut(s)	71, 163, 215, 224, 461, 516, 822
SsiI	CCGC	6 cut(s)	82, 148, 245, 490, 653, 878
SspMI	CTAG	2 cut(s)	797, 881
StyD4I	CCNGG	6 cut(s)	134, 276, 628, 657, 844, 1074
TaaI	ACNGT	3 cut(s)	570, 613, 1091
TaiI	ACGT	1 cut(s)	871
TaqI	TCGA	4 cut(s)	219, 261, 314, 924
TasI	AATT	7 cut(s)	71, 163, 215, 224, 461, 516, 822
TauI	GCSGC	1 cut(s)	655
TfiI	GAWTC	4 cut(s)	30, 371, 556, 841
TseFI	GTSAC	4 cut(s)	365, 455, 501, 930
TseI	GCWGC	3 cut(s)	580, 884, 1034
Tsp45I	GTSAC	4 cut(s)	365, 455, 501, 930
TspDTI	ATGAA	3 cut(s)	64, 237, 908
TspGWI	ACGGA	1 cut(s)	157
XapI	RAATTY	2 cut(s)	71, 215
XbaI	TCTAGA	1 cut(s)	796
XceI	RCATGY	1 cut(s)	534
XhoI	CTCGAG	1 cut(s)	313
XmiI	GTMKAC	1 cut(s)	615
XspI	CTAG	2 cut(s)	797, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.