AT3G08600

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014156
Physical Location & Seq
Forward (+)
2612175 .. 2614018
1844 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G08600.1

Sequence Viewer

Length: 951 bp
ATGGGGTTTCTCCGTTGTCTCCAGCTGCTGCTGCTTCTGTTTCTATCTCTTCGTCTACAAAAGCTCTCTGCTCAATCTTCTTCACCCAATGCTTCTTCTTCTTCTTCACTCGATGCTCTTCTTCAAGATTACTCTTTTAGAGCCTTGCTTCGTCCTCGTACCGGCATTCTCTACGAGGCTACTACTGTTCCTTCCAATTTGACTGGGATCAAACTCGCTGCTATGAGACTCAGAAGCGGAAGCTTTAGAAAACGTGGAGTCACTCCTTTTAATGAGTTCTCAATTCCCAGCGGCGTTATCGTCAAGCCGTATGTGACAAGGCTTGTTTTGGTTTATCAAAACCTAGCTAATTTCTCTCACTTGTATTACCCTTTGTCTGGTTATGATTATGTCGCTCCTGTCTTGGGTCTTCTCGCTTACGATGCTAAGAATCTCTCTGCGCTTAATTTGCCTCAGCTTGATTTAAGGGTGTCTAATGATCCTATCAGAATCGATTTCTCTGATCTGGAACGAATCCCGCAAGGGTCTAGTGCTAAGTGTGTTAGATTCGATTCTAAAGGTGAAGCGAGTTTCAGCGATTCGATTCAGCCTGGAAACACATGCGAGACTGAGCATCAGGGACATTTCTCTGTGGTGGTGAAATCTGTGGCTTCTGCTCCGAGTCTAGCTCCTCCTGGGATTGAGAGTAAGAAGAAGAAGAAGAGCTCTGATTCCAATTCCAAGACTTGGATCATTGTTGGGTCGGTGGTTGGTGGATTGATACTGTTGGGGCTTTTACTGTTTCTGGTTTTGAGATGTCGAAATTACAAGAAGCAAGAGAAAATGAGGGAGATGGAGAGAGCTGGAGAGACAGGGGAAGCTCTGAGGATGACTCAGGTTGGTGAAACAAGAGCACCAACTGCTACTACGACTCGTACACAACCAATGCTTGAAACCGAATACGCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

316

Amino Acids

34.73

Weight (kDa)

9.58

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 32 - 214 2.1e-71 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08600
fragaria_vesca FvH4_3g04260 FvH4_6g09410
malus_domestica MD04G1178000.v1.1 MD12G1193600.v1.1
prunus_persica Prupe.6G297900_v2.0.a1
pyrus_communis pycom04g15700 pycom12g17980
rosa_chinensis RchiOBHm_Chr3g0459851
rosa_laevigata RLG00000025056
rosa_multiflora Rmu_sc0000240.1_g000040
rosa_roxburghii Rroxscaffold_6G00419960
rosa_rugosa Rorug03G0038100
rosa_samantha Rh3AG097000 Rh3BG099800 Rh3CG101600 Rh3DG101200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 726
AccI GTMKAC 1 cut(s) 55
AciI CCGC 3 cut(s) 237, 291, 518
AclWI GGATC 3 cut(s) 215, 473, 737
AfaI GTAC 2 cut(s) 160, 916
AfiI CCNNNNNNNGG 4 cut(s) 161, 377, 404, 726
AgsI TTSAA 2 cut(s) 125, 932
AjnI CCWGG 2 cut(s) 589, 673
Alw21I GWGCWC 2 cut(s) 707, 895
Alw26I GTCTC 4 cut(s) 23, 220, 599, 842
AlwI GGATC 3 cut(s) 215, 473, 737
AlwNI CAGNNNCTG 1 cut(s) 28
ApeKI GCWGC 5 cut(s) 25, 28, 31, 218, 944
AspLEI GCGC 1 cut(s) 442
AsuHPI GGTGA 4 cut(s) 75, 572, 649, 893
BanII GRGCYC 1 cut(s) 707
BbsI GAAGAC 1 cut(s) 401
Bbv12I GWGCWC 2 cut(s) 707, 895
BbvCI CCTCAGC 1 cut(s) 453
BbvI GCAGC 4 cut(s) 12, 15, 18, 205
BccI CCATC 1 cut(s) 826
BceAI ACGGC 1 cut(s) 292
BciT130I CCWGG 2 cut(s) 591, 675
BcoDI GTCTC 4 cut(s) 23, 220, 599, 842
BfaI CTAG 3 cut(s) 344, 528, 665
BisI GCNGC 6 cut(s) 26, 29, 32, 219, 292, 945
BlsI GCNGC 6 cut(s) 27, 30, 33, 220, 293, 946
Bme1390I CCNGG 2 cut(s) 591, 675
BmrFI CCNGG 2 cut(s) 591, 675
BmrI ACTGGG 1 cut(s) 213
BmsI GCATC 3 cut(s) 103, 412, 622
BmuI ACTGGG 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 401
BplI GAGNNNNNCTC 4 cut(s) 652, 684, 856, 888
BpmI CTGGAG 2 cut(s) 5, 864
Bpu10I CCTNAGC 1 cut(s) 453
Bsa29I ATCGAT 1 cut(s) 492
BsaJI CCNNGG 1 cut(s) 674
Bsc4I CCNNNNNNNGG 4 cut(s) 161, 377, 404, 726
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 208
BseBI CCWGG 2 cut(s) 591, 675
BseCI ATCGAT 1 cut(s) 492
BseDI CCNNGG 1 cut(s) 674
BseGI GGATG 1 cut(s) 873
BseLI CCNNNNNNNGG 4 cut(s) 161, 377, 404, 726
BseMII CTCAG 5 cut(s) 244, 467, 600, 854, 887
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 660
BseXI GCAGC 4 cut(s) 12, 15, 18, 205
BseYI CCCAGC 1 cut(s) 287
BshVI ATCGAT 1 cut(s) 492
BsiHKAI GWGCWC 2 cut(s) 707, 895
BsiSI CCGG 1 cut(s) 162
BslFI GGGAC 1 cut(s) 633
BslI CCNNNNNNNGG 4 cut(s) 161, 377, 404, 726
BsmAI GTCTC 4 cut(s) 23, 220, 599, 842
BsmFI GGGAC 1 cut(s) 633
BsmI GAATGC 1 cut(s) 165
Bsp1286I GDGCHC 2 cut(s) 707, 895
Bsp143I GATC 4 cut(s) 207, 478, 502, 729
BspACI CCGC 3 cut(s) 237, 291, 518
BspCNI CTCAG 5 cut(s) 243, 466, 601, 855, 886
BspDI ATCGAT 1 cut(s) 492
BspPI GGATC 3 cut(s) 215, 473, 737
BspQI GCTCTTC 2 cut(s) 123, 695
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 1 cut(s) 208
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 674
BssMI GATC 4 cut(s) 207, 478, 502, 729
Bst2UI CCWGG 2 cut(s) 591, 675
Bst4CI ACNGT 3 cut(s) 187, 765, 780
Bst6I CTCTTC 3 cut(s) 54, 123, 695
BstAPI GCANNNNNTGC 1 cut(s) 899
BstDEI CTNAG 8 cut(s) 230, 426, 453, 534, 609, 863, 873, 948
BstF5I GGATG 1 cut(s) 873
BstHHI GCGC 1 cut(s) 442
BstKTI GATC 4 cut(s) 210, 481, 505, 732
BstMAI GTCTC 4 cut(s) 23, 220, 599, 842
BstMBI GATC 4 cut(s) 207, 478, 502, 729
BstMWI GCNNNNNNNGC 4 cut(s) 31, 422, 448, 899
BstNI CCWGG 2 cut(s) 591, 675
BstNSI RCATGY 1 cut(s) 603
BstSCI CCNGG 2 cut(s) 589, 673
BstV1I GCAGC 4 cut(s) 12, 15, 18, 205
BstV2I GAAGAC 1 cut(s) 401
Bsu15I ATCGAT 1 cut(s) 492
BsuTUI ATCGAT 1 cut(s) 492
BtsCI GGATG 1 cut(s) 873
CaiI CAGNNNCTG 1 cut(s) 28
CfoI GCGC 1 cut(s) 442
Cfr10I RCCGGY 1 cut(s) 161
ClaI ATCGAT 1 cut(s) 492
Csp6I GTAC 2 cut(s) 159, 915
CviAII CATG 1 cut(s) 600
CviQI GTAC 2 cut(s) 159, 915
DdeI CTNAG 8 cut(s) 230, 426, 453, 534, 609, 863, 873, 948
DpnI GATC 4 cut(s) 209, 480, 504, 731
DpnII GATC 4 cut(s) 207, 478, 502, 729
Eam1104I CTCTTC 3 cut(s) 54, 123, 695
EarI CTCTTC 3 cut(s) 54, 123, 695
Ecl136II GAGCTC 1 cut(s) 705
Eco24I GRGCYC 1 cut(s) 707
Eco53kI GAGCTC 1 cut(s) 705
EcoICRI GAGCTC 1 cut(s) 705
EcoRII CCWGG 2 cut(s) 589, 673
EcoT38I GRGCYC 1 cut(s) 707
FaeI CATG 1 cut(s) 603
FaiI YATR 5 cut(s) 224, 312, 384, 390, 601
FaqI GGGAC 1 cut(s) 633
FatI CATG 1 cut(s) 599
FauI CCCGC 1 cut(s) 525
FblI GTMKAC 1 cut(s) 55
Fnu4HI GCNGC 6 cut(s) 26, 29, 32, 219, 292, 945
FokI GGATG 1 cut(s) 880
FriOI GRGCYC 1 cut(s) 707
Fsp4HI GCNGC 6 cut(s) 26, 29, 32, 219, 292, 945
FspBI CTAG 3 cut(s) 344, 528, 665
GlaI GCGC 1 cut(s) 441
GluI GCNGC 6 cut(s) 26, 29, 32, 219, 292, 945
GsaI CCCAGC 1 cut(s) 291
GsuI CTGGAG 2 cut(s) 5, 864
HapII CCGG 1 cut(s) 162
HhaI GCGC 1 cut(s) 442
Hin1II CATG 1 cut(s) 603
Hin6I GCGC 1 cut(s) 440
HinP1I GCGC 1 cut(s) 440
HindIII AAGCTT 1 cut(s) 241
HpaII CCGG 1 cut(s) 162
HphI GGTGA 4 cut(s) 75, 572, 649, 893
Hpy166II GTNNAC 2 cut(s) 56, 917
Hpy188I TCNGA 6 cut(s) 233, 488, 502, 660, 709, 864
Hpy188III TCNNGA 2 cut(s) 125, 506
Hpy8I GTNNAC 2 cut(s) 56, 917
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 3 cut(s) 187, 765, 780
HpyCH4IV ACGT 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 422, 448, 899
HpyF3I CTNAG 8 cut(s) 230, 426, 453, 534, 609, 863, 873, 948
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 1 cut(s) 603
HspAI GCGC 1 cut(s) 440
Kzo9I GATC 4 cut(s) 207, 478, 502, 729
LguI GCTCTTC 2 cut(s) 123, 695
LmnI GCTCC 3 cut(s) 400, 661, 673
Lsp1109I GCAGC 4 cut(s) 12, 15, 18, 205
LweI GCATC 3 cut(s) 103, 412, 622
MaeI CTAG 3 cut(s) 344, 528, 665
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 2 cut(s) 259, 313
MalI GATC 4 cut(s) 209, 480, 504, 731
MboI GATC 4 cut(s) 207, 478, 502, 729
MhlI GDGCHC 2 cut(s) 707, 895
MluCI AATT 6 cut(s) 196, 282, 349, 445, 715, 802
MlyI GAGTC 5 cut(s) 222, 267, 670, 865, 904
MnlI CCTC 6 cut(s) 165, 169, 462, 681, 819, 858
MseI TTAA 3 cut(s) 270, 444, 464
MspA1I CMGCKG 2 cut(s) 25, 291
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 2 cut(s) 591, 675
Mva1269I GAATGC 1 cut(s) 165
MvaI CCWGG 2 cut(s) 591, 675
MwoI GCNNNNNNNGC 4 cut(s) 31, 422, 448, 899
NdeII GATC 4 cut(s) 207, 478, 502, 729
NlaIII CATG 1 cut(s) 603
NmuCI GTSAC 2 cut(s) 259, 313
NspI RCATGY 1 cut(s) 603
PciSI GCTCTTC 2 cut(s) 123, 695
PctI GAATGC 1 cut(s) 165
PfeI GAWTC 8 cut(s) 430, 489, 513, 546, 551, 578, 583, 710
PflMI CCANNNNNTGG 1 cut(s) 726
PkrI GCNGC 6 cut(s) 27, 30, 33, 220, 293, 946
PleI GAGTC 5 cut(s) 222, 266, 669, 865, 904
PpsI GAGTC 5 cut(s) 222, 266, 669, 865, 904
Psp124BI GAGCTC 1 cut(s) 707
Psp6I CCWGG 2 cut(s) 589, 673
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 2 cut(s) 589, 673
PstNI CAGNNNCTG 1 cut(s) 28
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 2 cut(s) 160, 916
RsaNI GTAC 2 cut(s) 159, 915
SacI GAGCTC 1 cut(s) 707
SapI GCTCTTC 2 cut(s) 123, 695
SaqAI TTAA 3 cut(s) 270, 444, 464
SatI GCNGC 6 cut(s) 26, 29, 32, 219, 292, 945
Sau3AI GATC 4 cut(s) 207, 478, 502, 729
SchI GAGTC 5 cut(s) 222, 267, 670, 865, 904
ScrFI CCNGG 2 cut(s) 591, 675
SduI GDGCHC 2 cut(s) 707, 895
SfaNI GCATC 3 cut(s) 103, 412, 622
Sse9I AATT 6 cut(s) 196, 282, 349, 445, 715, 802
SsiI CCGC 3 cut(s) 237, 291, 518
SspMI CTAG 3 cut(s) 344, 528, 665
SstI GAGCTC 1 cut(s) 707
StyD4I CCNGG 2 cut(s) 589, 673
TaaI ACNGT 3 cut(s) 187, 765, 780
TaiI ACGT 1 cut(s) 256
TaqI TCGA 5 cut(s) 111, 492, 549, 581, 799
TasI AATT 6 cut(s) 196, 282, 349, 445, 715, 802
TauI GCSGC 1 cut(s) 294
TfiI GAWTC 8 cut(s) 430, 489, 513, 546, 551, 578, 583, 710
Tru1I TTAA 3 cut(s) 270, 444, 464
Tru9I TTAA 3 cut(s) 270, 444, 464
TseFI GTSAC 2 cut(s) 259, 313
TseI GCWGC 5 cut(s) 25, 28, 31, 218, 944
Tsp45I GTSAC 2 cut(s) 259, 313
Van91I CCANNNNNTGG 1 cut(s) 726
XceI RCATGY 1 cut(s) 603
XmiI GTMKAC 1 cut(s) 55
XspI CTAG 3 cut(s) 344, 528, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.