Rmu_sc0000240.1_g000040

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000240.1
OG0014156
Physical Location & Seq
Forward (+)
213745 .. 214689
945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000240.1_g000040.1.cds

Sequence Viewer

Length: 945 bp
atggggcttctctatcgaagtctcgcgatgctagtggttctgatatggttatcacggctggctcatctctcggcacagtcgtccagtggccaagcacctgctcttgatgtgcttcttcaagattatgcctacagggcctttgttcatcccaagactggagttccctatgatgctcaggttccttcgaatttgagtggaattcagattgcagctttgaggctcaggagtggtagcttgtacaggagaggtgttgtgtacaaagagtttgagttcccagtaggagtcaatgagagtccatatgcggagaggcttgttctggtgtaccagaacttaggcaattggtcattggtgtattatccattaccaggttattcatacttagctccagtgttgggtctccttgcttatgatgctatcgatttatcagcgaaaaatttaccatacttggatatcgctgcaactgttgatcccataaagatcaaatttcaggatgtgaaaccgacccctgatggcaccgtggcgaagtgtgttacttttgacttagatggttctgtcaatttcagcaatgtgggatcaggcaatgcatgttcagctttcaaacaggggcacttcgctatagtagttgagtccattgctccttctccatcaccagtcacctctcgaagccccccaactcctactcctggtggtcgaggaaagaagaagagtaattcaaaaacgtggataattgttgggtctgtgctcggtggattagcgttgttggcattgttggcattcctggtactctgggggcgtaaatacagggaaaggaaacatttggaagagatggagaaagctgcagatgtaggagaagctttgcatatgacaacagttggagatacaaaagcaccttcagcaatggttactcgaacacaaccgacaattgagagtgaatatgtgccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

314

Amino Acids

34.03

Weight (kDa)

9.01

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08600
fragaria_vesca FvH4_3g04260 FvH4_6g09410
malus_domestica MD04G1178000.v1.1 MD12G1193600.v1.1
prunus_persica Prupe.6G297900_v2.0.a1
pyrus_communis pycom04g15700 pycom12g17980
rosa_chinensis RchiOBHm_Chr3g0459851
rosa_laevigata RLG00000025056
rosa_multiflora Rmu_sc0000240.1_g000040
rosa_roxburghii Rroxscaffold_6G00419960
rosa_rugosa Rorug03G0038100
rosa_samantha Rh3AG097000 Rh3BG099800 Rh3CG101600 Rh3DG101200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 106
Acc36I ACCTGC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 512
AccII CGCG 1 cut(s) 26
AciI CCGC 1 cut(s) 302
AclWI GGATC 2 cut(s) 461, 580
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 4 cut(s) 187, 198, 433, 482
AcuI CTGAAG 1 cut(s) 876
AfaI GTAC 4 cut(s) 239, 257, 323, 783
AfiI CCNNNNNNNGG 4 cut(s) 155, 365, 392, 683
AgsI TTSAA 3 cut(s) 119, 598, 714
AjnI CCWGG 3 cut(s) 364, 682, 777
AluBI AGCT 6 cut(s) 212, 234, 383, 593, 836, 854
AluI AGCT 6 cut(s) 212, 234, 383, 593, 836, 854
Alw21I GWGCWC 1 cut(s) 744
Alw26I GTCTC 2 cut(s) 26, 401
AlwI GGATC 2 cut(s) 461, 580
AoxI GGCC 2 cut(s) 88, 135
ApeKI GCWGC 3 cut(s) 209, 455, 836
ApoI RAATTY 4 cut(s) 187, 198, 433, 482
AspS9I GGNCC 1 cut(s) 135
AsuHPI GGTGA 2 cut(s) 639, 646
AsuII TTCGAA 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 609
BalI TGGCCA 1 cut(s) 90
BanI GGYRCC 1 cut(s) 512
Bbv12I GWGCWC 1 cut(s) 744
BbvI GCAGC 3 cut(s) 221, 442, 823
BccI CCATC 4 cut(s) 503, 539, 652, 820
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 3 cut(s) 366, 684, 779
BcoDI GTCTC 2 cut(s) 26, 401
BfaI CTAG 1 cut(s) 32
BfmI CTRYAG 3 cut(s) 130, 615, 837
BfuAI ACCTGC 1 cut(s) 106
BglI GCCNNNNNGGC 1 cut(s) 134
BisI GCNGC 3 cut(s) 210, 456, 837
BlsI GCNGC 3 cut(s) 211, 457, 838
Bme1390I CCNGG 3 cut(s) 366, 684, 779
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 2 cut(s) 180, 514
BmrFI CCNGG 3 cut(s) 366, 684, 779
BmrI ACTGGG 1 cut(s) 269
BmsI GCATC 3 cut(s) 18, 160, 400
BmuI ACTGGG 1 cut(s) 269
BpmI CTGGAG 2 cut(s) 177, 369
Bpu10I CCTNAGC 2 cut(s) 174, 221
Bpu14I TTCGAA 1 cut(s) 185
Bsa29I ATCGAT 1 cut(s) 417
BsaI GGTCTC 1 cut(s) 401
BsaJI CCNNGG 1 cut(s) 516
BsaXI ACNNNNNCTCC 2 cut(s) 664, 694
Bsc4I CCNNNNNNNGG 4 cut(s) 155, 365, 392, 683
Bse1I ACTGG 5 cut(s) 84, 160, 275, 386, 650
Bse3DI GCAATG 4 cut(s) 571, 586, 630, 903
BseBI CCWGG 3 cut(s) 366, 684, 779
BseCI ATCGAT 1 cut(s) 417
BseDI CCNNGG 1 cut(s) 516
BseGI GGATG 2 cut(s) 145, 496
BseLI CCNNNNNNNGG 4 cut(s) 155, 365, 392, 683
BseMI GCAATG 4 cut(s) 571, 586, 630, 903
BseMII CTCAG 2 cut(s) 188, 235
BseNI ACTGG 5 cut(s) 84, 160, 275, 386, 650
BseSI GKGCMC 1 cut(s) 609
BseXI GCAGC 3 cut(s) 221, 442, 823
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 2 cut(s) 90, 137
BshNI GGYRCC 1 cut(s) 512
BshVI ATCGAT 1 cut(s) 417
BsiHKAI GWGCWC 1 cut(s) 744
BslI CCNNNNNNNGG 4 cut(s) 155, 365, 392, 683
BsmAI GTCTC 2 cut(s) 26, 401
BsmI GAATGC 1 cut(s) 773
BsnI GGCC 2 cut(s) 90, 137
Bso31I GGTCTC 1 cut(s) 401
Bsp119I TTCGAA 1 cut(s) 185
Bsp1286I GDGCHC 2 cut(s) 609, 744
Bsp1407I TGTACA 2 cut(s) 237, 255
Bsp143I GATC 3 cut(s) 466, 477, 572
Bsp68I TCGCGA 1 cut(s) 26
BspACI CCGC 1 cut(s) 302
BspANI GGCC 2 cut(s) 90, 137
BspCNI CTCAG 2 cut(s) 187, 234
BspDI ATCGAT 1 cut(s) 417
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 2 cut(s) 180, 514
BspMAI CTGCAG 1 cut(s) 841
BspMI ACCTGC 1 cut(s) 106
BspPI GGATC 2 cut(s) 461, 580
BspT104I TTCGAA 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 512
BspTNI GGTCTC 1 cut(s) 401
BsrDI GCAATG 4 cut(s) 571, 586, 630, 903
BsrGI TGTACA 2 cut(s) 237, 255
BsrI ACTGG 5 cut(s) 84, 160, 275, 386, 650
BssECI CCNNGG 1 cut(s) 516
BssMI GATC 3 cut(s) 466, 477, 572
Bst2UI CCWGG 3 cut(s) 366, 684, 779
Bst4CI ACNGT 4 cut(s) 78, 463, 517, 871
Bst6I CTCTTC 2 cut(s) 698, 816
BstAUI TGTACA 2 cut(s) 237, 255
BstBI TTCGAA 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 5 cut(s) 174, 221, 331, 379, 541
BstDSI CCRYGG 1 cut(s) 516
BstF5I GGATG 2 cut(s) 145, 496
BstFNI CGCG 1 cut(s) 26
BstKTI GATC 3 cut(s) 469, 480, 575
BstMAI GTCTC 2 cut(s) 26, 401
BstMBI GATC 3 cut(s) 466, 477, 572
BstMWI GCNNNNNNNGC 6 cut(s) 134, 410, 590, 761, 770, 893
BstNI CCWGG 3 cut(s) 366, 684, 779
BstNSI RCATGY 1 cut(s) 588
BstSCI CCNGG 3 cut(s) 364, 682, 777
BstSFI CTRYAG 3 cut(s) 130, 615, 837
BstSLI GKGCMC 1 cut(s) 609
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 3 cut(s) 221, 442, 823
Bsu15I ATCGAT 1 cut(s) 417
BsuRI GGCC 2 cut(s) 90, 137
BsuTUI ATCGAT 1 cut(s) 417
BtgI CCRYGG 1 cut(s) 516
BtgZI GCGATG 1 cut(s) 41
BtsCI GGATG 2 cut(s) 145, 496
BtsIMutI CAGTG 2 cut(s) 91, 393
BtuMI TCGCGA 1 cut(s) 26
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 135
ClaI ATCGAT 1 cut(s) 417
CsiI ACCWGGT 1 cut(s) 364
Csp6I GTAC 4 cut(s) 238, 256, 322, 782
CviAII CATG 1 cut(s) 585
CviQI GTAC 4 cut(s) 238, 256, 322, 782
DdeI CTNAG 5 cut(s) 174, 221, 331, 379, 541
DpnI GATC 3 cut(s) 468, 479, 574
DpnII GATC 3 cut(s) 466, 477, 572
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 2 cut(s) 698, 816
EarI CTCTTC 2 cut(s) 698, 816
Eco31I GGTCTC 1 cut(s) 401
Eco32I GATATC 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 876
EcoO109I RGGNCCY 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 198
EcoRII CCWGG 3 cut(s) 364, 682, 777
EcoRV GATATC 1 cut(s) 451
EcoT22I ATGCAT 1 cut(s) 586
FaeI CATG 1 cut(s) 588
FatI CATG 1 cut(s) 584
FauNDI CATATG 2 cut(s) 298, 861
Fnu4HI GCNGC 3 cut(s) 210, 456, 837
FokI GGATG 2 cut(s) 132, 503
Fsp4HI GCNGC 3 cut(s) 210, 456, 837
FspBI CTAG 1 cut(s) 32
GluI GCNGC 3 cut(s) 210, 456, 837
GsuI CTGGAG 2 cut(s) 177, 369
HaeIII GGCC 2 cut(s) 90, 137
Hin1II CATG 1 cut(s) 588
HindIII AAGCTT 1 cut(s) 852
HinfI GANTC 3 cut(s) 282, 292, 626
HphI GGTGA 2 cut(s) 639, 646
Hpy166II GTNNAC 2 cut(s) 256, 322
Hpy188I TCNGA 2 cut(s) 42, 204
Hpy188III TCNNGA 6 cut(s) 25, 104, 119, 223, 488, 660
Hpy8I GTNNAC 2 cut(s) 256, 322
HpyAV CCTTC 3 cut(s) 192, 648, 900
HpyCH4III ACNGT 4 cut(s) 78, 463, 517, 871
HpyCH4IV ACGT 1 cut(s) 719
HpyCH4V TGCA 5 cut(s) 209, 458, 584, 839, 859
HpyF10VI GCNNNNNNNGC 6 cut(s) 134, 410, 590, 761, 770, 893
HpyF3I CTNAG 5 cut(s) 174, 221, 331, 379, 541
HpySE526I ACGT 1 cut(s) 719
Hsp92II CATG 1 cut(s) 588
Kzo9I GATC 3 cut(s) 466, 477, 572
LmnI GCTCC 2 cut(s) 388, 640
Lsp1109I GCAGC 3 cut(s) 221, 442, 823
LweI GCATC 3 cut(s) 18, 160, 400
MabI ACCWGGT 1 cut(s) 364
MaeI CTAG 1 cut(s) 32
MaeII ACGT 1 cut(s) 719
MaeIII GTNAC 3 cut(s) 529, 652, 901
MalI GATC 3 cut(s) 468, 479, 574
MboI GATC 3 cut(s) 466, 477, 572
MboII GAAGA 4 cut(s) 107, 712, 715, 833
MfeI CAATTG 2 cut(s) 337, 921
MhlI GDGCHC 2 cut(s) 609, 744
MlsI TGGCCA 1 cut(s) 90
MluCI AATT 9 cut(s) 187, 198, 337, 433, 482, 556, 709, 726, 921
MluNI TGGCCA 1 cut(s) 90
MlyI GAGTC 3 cut(s) 291, 301, 635
MmeI TCCRAC 1 cut(s) 853
MnlI CCTC 5 cut(s) 210, 239, 300, 667, 686
Mox20I TGGCCA 1 cut(s) 90
Mph1103I ATGCAT 1 cut(s) 586
MscI TGGCCA 1 cut(s) 90
Msp20I TGGCCA 1 cut(s) 90
MspR9I CCNGG 3 cut(s) 366, 684, 779
MunI CAATTG 2 cut(s) 337, 921
Mva1269I GAATGC 1 cut(s) 773
MvaI CCWGG 3 cut(s) 366, 684, 779
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 6 cut(s) 134, 410, 590, 761, 770, 893
NdeI CATATG 2 cut(s) 298, 861
NdeII GATC 3 cut(s) 466, 477, 572
NlaIII CATG 1 cut(s) 588
NlaIV GGNNCC 2 cut(s) 180, 514
NmeAIII GCCGAG 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 652
NruI TCGCGA 1 cut(s) 26
NsiI ATGCAT 1 cut(s) 586
NspI RCATGY 1 cut(s) 588
NspV TTCGAA 1 cut(s) 185
PaqCI CACCTGC 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PctI GAATGC 1 cut(s) 773
PkrI GCNGC 3 cut(s) 211, 457, 838
PleI GAGTC 3 cut(s) 290, 300, 634
PpsI GAGTC 3 cut(s) 290, 300, 634
Psp6I CCWGG 3 cut(s) 364, 682, 777
PspGI CCWGG 3 cut(s) 364, 682, 777
PspN4I GGNNCC 2 cut(s) 180, 514
PspPI GGNCC 1 cut(s) 135
PstI CTGCAG 1 cut(s) 841
RruI TCGCGA 1 cut(s) 26
RsaI GTAC 4 cut(s) 239, 257, 323, 783
RsaNI GTAC 4 cut(s) 238, 256, 322, 782
SatI GCNGC 3 cut(s) 210, 456, 837
Sau3AI GATC 3 cut(s) 466, 477, 572
Sau96I GGNCC 1 cut(s) 135
SchI GAGTC 3 cut(s) 291, 301, 635
ScrFI CCNGG 3 cut(s) 366, 684, 779
SduI GDGCHC 2 cut(s) 609, 744
SexAI ACCWGGT 1 cut(s) 364
SfaNI GCATC 3 cut(s) 18, 160, 400
SfcI CTRYAG 3 cut(s) 130, 615, 837
SfuI TTCGAA 1 cut(s) 185
Sse9I AATT 9 cut(s) 187, 198, 337, 433, 482, 556, 709, 726, 921
SsiI CCGC 1 cut(s) 302
SspMI CTAG 1 cut(s) 32
StyD4I CCNGG 3 cut(s) 364, 682, 777
TaaI ACNGT 4 cut(s) 78, 463, 517, 871
TaiI ACGT 1 cut(s) 722
TaqI TCGA 6 cut(s) 16, 185, 417, 661, 691, 907
TasI AATT 9 cut(s) 187, 198, 337, 433, 482, 556, 709, 726, 921
TatI WGTACW 2 cut(s) 237, 255
TscAI CASTG 2 cut(s) 91, 393
TseFI GTSAC 1 cut(s) 652
TseI GCWGC 3 cut(s) 209, 455, 836
Tsp45I GTSAC 1 cut(s) 652
TspDTI ATGAA 2 cut(s) 134, 363
TspRI CASTG 2 cut(s) 91, 393
XapI RAATTY 4 cut(s) 187, 198, 433, 482
XceI RCATGY 1 cut(s) 588
XspI CTAG 1 cut(s) 32
Zsp2I ATGCAT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.