FvH4_6g09410

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014156
Physical Location & Seq
Forward (+)
5584457 .. 5585404
948 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09410.t1

Sequence Viewer

Length: 948 bp
ATGGGGCTTCTTTTCCGAAGTCTCGTGATACTAGTGGTTCTGATATGGTTGTCACGGCTGTCATATCTCTCGGCAGAGCTTTCAAGTGGCCAAGCCGCTGCTCTCGACGTGCTTCTTCAAGACTATGCTTACAGGGCCTTTGTTCGACCCAAGACTGGAGTTCCCTATGATGCGCAGGTTCCTTCGAATTTGACTGGAGTTCAGATTGCAGCTTTGAGGCTTAGGAGTGGAAGCTTGTACAGGAGAGGTGTTGTGTACAAAGAGTTTGAGTTCCCAGTGGGAGTGAATGAGAGTCCATACGCGGAGAGGCTTGTTCTGGTGTACCAGAACATAGGCAATTGGTCAGTGGTGTTCTATCCATTACCAGGTTATTCTTACTTGGCTCCAGTGTTGGGCCTCCTTGCTTATGATGCTATCAATTTATCAGCGAAAAGATTACCATACTTGGATATCAAGGCAACTGATGATCCCATAAAGATCAAATTTCAGGATGTGAAACCATACCCTGATGGCGCTGTGGTGAAGTGTGTAACTTTTAATTTAGATGGCTCTGTCAATTTGAGTGATGTGGGATCAGGCAATACATGTTTAGCAGTCCAACAGGGGCACTTCGCTATTGTGGTGGAGTCCATTGCTCCTGCTCCATCACCGGTCACCACCCCTAATAACGGAAGTCCCCCAAGTCCTGGTGGTAGAGGAAAGAAAAAGAGTAATTCAAAAACATGGATAATTGTTGGGTCTGTGCTCGGTGGATTAGCATTGTTGGCATTGTTGGCATTCCTGGTACTGTGGGTGCATAAATACAGGGAAAGAAAGCATTTGGAAGAGATGGAGAAGGTTGCAGACTCAGGAGAAGCTTTGCATATGACAACAGTTGGAGATACAAAAGCACCTTCAGCAATGGTTACTCGAACACAACCTACAATCGAGAGTGAATACGTTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

316

Amino Acids

34.26

Weight (kDa)

8.86

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 31 - 209 9.6e-70 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08600
fragaria_vesca FvH4_3g04260 FvH4_6g09410
malus_domestica MD04G1178000.v1.1 MD12G1193600.v1.1
prunus_persica Prupe.6G297900_v2.0.a1
pyrus_communis pycom04g15700 pycom12g17980
rosa_chinensis RchiOBHm_Chr3g0459851
rosa_laevigata RLG00000025056
rosa_multiflora Rmu_sc0000240.1_g000040
rosa_roxburghii Rroxscaffold_6G00419960
rosa_rugosa Rorug03G0038100
rosa_samantha Rh3AG097000 Rh3BG099800 Rh3CG101600 Rh3DG101200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 174
Acc36I ACCTGC 1 cut(s) 166
AccB7I CCANNNNNTGG 1 cut(s) 686
AccII CGCG 1 cut(s) 302
AciI CCGC 2 cut(s) 96, 302
AclWI GGATC 2 cut(s) 461, 580
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 2 cut(s) 187, 482
AcuI CTGAAG 1 cut(s) 879
AfaI GTAC 4 cut(s) 239, 257, 323, 786
AfiI CCNNNNNNNGG 5 cut(s) 155, 365, 392, 668, 686
AflIII ACRYGT 1 cut(s) 584
AgeI ACCGGT 1 cut(s) 649
AgsI TTSAA 3 cut(s) 84, 119, 717
AhlI ACTAGT 1 cut(s) 31
AjiI CACGTC 1 cut(s) 109
AjnI CCWGG 3 cut(s) 364, 685, 780
AluBI AGCT 4 cut(s) 79, 212, 234, 857
AluI AGCT 4 cut(s) 79, 212, 234, 857
Alw21I GWGCWC 1 cut(s) 747
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 2 cut(s) 461, 580
AoxI GGCC 3 cut(s) 88, 135, 394
ApeKI GCWGC 2 cut(s) 98, 209
ApoI RAATTY 2 cut(s) 187, 482
AsiGI ACCGGT 1 cut(s) 649
Asp700I GAANNNNTTC 1 cut(s) 939
AspLEI GCGC 2 cut(s) 175, 515
AspS9I GGNCC 2 cut(s) 135, 394
AsuHPI GGTGA 3 cut(s) 532, 639, 646
AsuII TTCGAA 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 609
BalI TGGCCA 1 cut(s) 90
BauI CACGAG 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 747
BbvI GCAGC 2 cut(s) 85, 221
BccI CCATC 4 cut(s) 503, 539, 652, 823
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 3 cut(s) 366, 687, 782
BcoDI GTCTC 1 cut(s) 26
BcuI ACTAGT 1 cut(s) 31
BfaI CTAG 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 516
BfuAI ACCTGC 1 cut(s) 166
BisI GCNGC 3 cut(s) 96, 99, 210
BlsI GCNGC 3 cut(s) 97, 100, 211
Bme1390I CCNGG 3 cut(s) 366, 687, 782
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 2 cut(s) 135, 394
BmiI GGNNCC 2 cut(s) 180, 384
BmrFI CCNGG 3 cut(s) 366, 687, 782
BmrI ACTGGG 1 cut(s) 269
BmsI GCATC 2 cut(s) 160, 400
BmuI ACTGGG 1 cut(s) 269
BpmI CTGGAG 3 cut(s) 177, 216, 369
Bpu10I CCTNAGC 1 cut(s) 221
Bpu14I TTCGAA 1 cut(s) 185
BsaWI WCCGGW 1 cut(s) 649
Bsc4I CCNNNNNNNGG 5 cut(s) 155, 365, 392, 668, 686
Bse118I RCCGGY 1 cut(s) 649
Bse1I ACTGG 4 cut(s) 160, 199, 275, 386
Bse3DI GCAATG 2 cut(s) 630, 906
BseBI CCWGG 3 cut(s) 366, 687, 782
BseGI GGATG 1 cut(s) 496
BseLI CCNNNNNNNGG 5 cut(s) 155, 365, 392, 668, 686
BseMI GCAATG 2 cut(s) 630, 906
BseMII CTCAG 1 cut(s) 861
BseNI ACTGG 4 cut(s) 160, 199, 275, 386
BseSI GKGCMC 1 cut(s) 609
BseXI GCAGC 2 cut(s) 85, 221
Bsh1236I CGCG 1 cut(s) 302
BshFI GGCC 3 cut(s) 90, 137, 396
BshTI ACCGGT 1 cut(s) 649
BsiHKAI GWGCWC 1 cut(s) 747
BsiSI CCGG 1 cut(s) 650
BslFI GGGAC 1 cut(s) 660
BslI CCNNNNNNNGG 5 cut(s) 155, 365, 392, 668, 686
BsmAI GTCTC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 660
BsmI GAATGC 1 cut(s) 776
BsnI GGCC 3 cut(s) 90, 137, 396
Bsp119I TTCGAA 1 cut(s) 185
Bsp1286I GDGCHC 2 cut(s) 609, 747
Bsp1407I TGTACA 2 cut(s) 237, 255
Bsp143I GATC 3 cut(s) 466, 477, 572
BspACI CCGC 2 cut(s) 96, 302
BspANI GGCC 3 cut(s) 90, 137, 396
BspCNI CTCAG 1 cut(s) 860
BspFNI CGCG 1 cut(s) 302
BspLI GGNNCC 2 cut(s) 180, 384
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 2 cut(s) 461, 580
BspT104I TTCGAA 1 cut(s) 185
BsrDI GCAATG 2 cut(s) 630, 906
BsrFI RCCGGY 1 cut(s) 649
BsrGI TGTACA 2 cut(s) 237, 255
BsrI ACTGG 4 cut(s) 160, 199, 275, 386
BssAI RCCGGY 1 cut(s) 649
BssMI GATC 3 cut(s) 466, 477, 572
BssSI CACGAG 1 cut(s) 23
Bst2BI CACGAG 1 cut(s) 23
Bst2UI CCWGG 3 cut(s) 366, 687, 782
Bst4CI ACNGT 2 cut(s) 789, 874
Bst6I CTCTTC 1 cut(s) 819
BstAUI TGTACA 2 cut(s) 237, 255
BstBI TTCGAA 1 cut(s) 185
BstDEI CTNAG 2 cut(s) 221, 847
BstEII GGTNACC 1 cut(s) 652
BstF5I GGATG 1 cut(s) 496
BstFNI CGCG 1 cut(s) 302
BstH2I RGCGCY 1 cut(s) 516
BstHHI GCGC 2 cut(s) 175, 515
BstKTI GATC 3 cut(s) 469, 480, 575
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 3 cut(s) 466, 477, 572
BstMWI GCNNNNNNNGC 5 cut(s) 134, 410, 764, 773, 896
BstNI CCWGG 3 cut(s) 366, 687, 782
BstNSI RCATGY 1 cut(s) 588
BstPI GGTNACC 1 cut(s) 652
BstSCI CCNGG 3 cut(s) 364, 685, 780
BstSLI GKGCMC 1 cut(s) 609
BstUI CGCG 1 cut(s) 302
BstV1I GCAGC 2 cut(s) 85, 221
BsuRI GGCC 3 cut(s) 90, 137, 396
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 496
BtsIMutI CAGTG 3 cut(s) 282, 351, 393
BveI ACCTGC 1 cut(s) 166
CfoI GCGC 2 cut(s) 175, 515
Cfr10I RCCGGY 1 cut(s) 649
Cfr13I GGNCC 2 cut(s) 135, 394
CsiI ACCWGGT 1 cut(s) 364
Csp6I GTAC 4 cut(s) 238, 256, 322, 785
CspAI ACCGGT 1 cut(s) 649
CviAII CATG 2 cut(s) 585, 723
CviQI GTAC 4 cut(s) 238, 256, 322, 785
DdeI CTNAG 2 cut(s) 221, 847
DpnI GATC 3 cut(s) 468, 479, 574
DpnII GATC 3 cut(s) 466, 477, 572
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 819
EarI CTCTTC 1 cut(s) 819
Eco32I GATATC 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 879
Eco91I GGTNACC 1 cut(s) 652
EcoO109I RGGNCCY 1 cut(s) 135
EcoO65I GGTNACC 1 cut(s) 652
EcoRII CCWGG 3 cut(s) 364, 685, 780
EcoRV GATATC 1 cut(s) 451
FaeI CATG 2 cut(s) 588, 726
FaqI GGGAC 1 cut(s) 660
FatI CATG 2 cut(s) 584, 722
FauNDI CATATG 1 cut(s) 864
Fnu4HI GCNGC 3 cut(s) 96, 99, 210
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 3 cut(s) 96, 99, 210
FspBI CTAG 1 cut(s) 32
FspI TGCGCA 1 cut(s) 174
GlaI GCGC 2 cut(s) 174, 514
GluI GCNGC 3 cut(s) 96, 99, 210
GsuI CTGGAG 3 cut(s) 177, 216, 369
HaeII RGCGCY 1 cut(s) 516
HaeIII GGCC 3 cut(s) 90, 137, 396
HapII CCGG 1 cut(s) 650
HhaI GCGC 2 cut(s) 175, 515
Hin1II CATG 2 cut(s) 588, 726
Hin6I GCGC 2 cut(s) 173, 513
HinP1I GCGC 2 cut(s) 173, 513
HindIII AAGCTT 2 cut(s) 232, 855
HinfI GANTC 3 cut(s) 292, 626, 845
HpaII CCGG 1 cut(s) 650
HphI GGTGA 3 cut(s) 532, 639, 646
Hpy166II GTNNAC 2 cut(s) 256, 322
Hpy188I TCNGA 3 cut(s) 17, 42, 204
Hpy188III TCNNGA 6 cut(s) 25, 104, 119, 488, 849, 928
Hpy8I GTNNAC 2 cut(s) 256, 322
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 3 cut(s) 192, 829, 903
HpyCH4III ACNGT 2 cut(s) 789, 874
HpyCH4IV ACGT 2 cut(s) 108, 939
HpyCH4V TGCA 4 cut(s) 209, 796, 842, 862
HpyF10VI GCNNNNNNNGC 5 cut(s) 134, 410, 764, 773, 896
HpyF3I CTNAG 2 cut(s) 221, 847
HpySE526I ACGT 2 cut(s) 108, 939
Hsp92II CATG 2 cut(s) 588, 726
HspAI GCGC 2 cut(s) 173, 513
Kzo9I GATC 3 cut(s) 466, 477, 572
LmnI GCTCC 3 cut(s) 388, 640, 646
Lsp1109I GCAGC 2 cut(s) 85, 221
LweI GCATC 2 cut(s) 160, 400
MabI ACCWGGT 1 cut(s) 364
MaeI CTAG 1 cut(s) 32
MaeII ACGT 2 cut(s) 108, 939
MaeIII GTNAC 4 cut(s) 51, 529, 652, 904
MalI GATC 3 cut(s) 468, 479, 574
MboI GATC 3 cut(s) 466, 477, 572
MboII GAAGA 2 cut(s) 107, 836
MfeI CAATTG 1 cut(s) 337
MhlI GDGCHC 2 cut(s) 609, 747
MlsI TGGCCA 1 cut(s) 90
MluCI AATT 8 cut(s) 187, 337, 418, 482, 538, 556, 712, 729
MluNI TGGCCA 1 cut(s) 90
MlyI GAGTC 3 cut(s) 301, 635, 839
MmeI TCCRAC 2 cut(s) 622, 856
MnlI CCTC 5 cut(s) 210, 239, 300, 407, 689
Mox20I TGGCCA 1 cut(s) 90
MroXI GAANNNNTTC 1 cut(s) 939
MscI TGGCCA 1 cut(s) 90
MseI TTAA 1 cut(s) 537
Msp20I TGGCCA 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 1 cut(s) 650
MspR9I CCNGG 3 cut(s) 366, 687, 782
MunI CAATTG 1 cut(s) 337
Mva1269I GAATGC 1 cut(s) 776
MvaI CCWGG 3 cut(s) 366, 687, 782
MvnI CGCG 1 cut(s) 302
MwoI GCNNNNNNNGC 5 cut(s) 134, 410, 764, 773, 896
NdeI CATATG 1 cut(s) 864
NdeII GATC 3 cut(s) 466, 477, 572
NlaIII CATG 2 cut(s) 588, 726
NlaIV GGNNCC 2 cut(s) 180, 384
NmeAIII GCCGAG 1 cut(s) 50
NmuCI GTSAC 2 cut(s) 51, 652
NsbI TGCGCA 1 cut(s) 174
NspI RCATGY 1 cut(s) 588
NspV TTCGAA 1 cut(s) 185
PciI ACATGT 1 cut(s) 584
PctI GAATGC 1 cut(s) 776
PdmI GAANNNNTTC 1 cut(s) 939
PflMI CCANNNNNTGG 1 cut(s) 686
PinAI ACCGGT 1 cut(s) 649
PkrI GCNGC 3 cut(s) 97, 100, 211
PleI GAGTC 3 cut(s) 300, 634, 839
PpsI GAGTC 3 cut(s) 300, 634, 839
PscI ACATGT 1 cut(s) 584
Psp6I CCWGG 3 cut(s) 364, 685, 780
PspEI GGTNACC 1 cut(s) 652
PspGI CCWGG 3 cut(s) 364, 685, 780
PspN4I GGNNCC 2 cut(s) 180, 384
PspPI GGNCC 2 cut(s) 135, 394
PsrI GAACNNNNNNTAC 2 cut(s) 904, 936
RsaI GTAC 4 cut(s) 239, 257, 323, 786
RsaNI GTAC 4 cut(s) 238, 256, 322, 785
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 3 cut(s) 96, 99, 210
Sau3AI GATC 3 cut(s) 466, 477, 572
Sau96I GGNCC 2 cut(s) 135, 394
SchI GAGTC 3 cut(s) 301, 635, 839
ScrFI CCNGG 3 cut(s) 366, 687, 782
SduI GDGCHC 2 cut(s) 609, 747
SexAI ACCWGGT 1 cut(s) 364
SfaNI GCATC 2 cut(s) 160, 400
SfuI TTCGAA 1 cut(s) 185
SpeI ACTAGT 1 cut(s) 31
Sse9I AATT 8 cut(s) 187, 337, 418, 482, 538, 556, 712, 729
SsiI CCGC 2 cut(s) 96, 302
SspMI CTAG 1 cut(s) 32
StyD4I CCNGG 3 cut(s) 364, 685, 780
TaaI ACNGT 2 cut(s) 789, 874
TaiI ACGT 2 cut(s) 111, 942
TaqI TCGA 5 cut(s) 105, 145, 185, 910, 927
TasI AATT 8 cut(s) 187, 337, 418, 482, 538, 556, 712, 729
TatI WGTACW 2 cut(s) 237, 255
TauI GCSGC 1 cut(s) 98
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 3 cut(s) 282, 351, 393
TseFI GTSAC 2 cut(s) 51, 652
TseI GCWGC 2 cut(s) 98, 209
Tsp45I GTSAC 2 cut(s) 51, 652
TspGWI ACGGA 1 cut(s) 684
TspRI CASTG 3 cut(s) 282, 351, 393
Van91I CCANNNNNTGG 1 cut(s) 686
XapI RAATTY 2 cut(s) 187, 482
XceI RCATGY 1 cut(s) 588
XmnI GAANNNNTTC 1 cut(s) 939
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.