Rroxscaffold_6G00419960

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0014156
Physical Location & Seq
Reverse (-)
41307719 .. 41310210
2492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419960.1

Sequence Viewer

Length: 798 bp
ATGGGGCTTCTCTACCGAAGTCTCGCGATGCTAGTGGTTCTGATATGGTTATCACGGCTGGCTCATCTCTCGGCACAGTCGTCCAGTGGCCAAGCACCTGCTCTTGATGTGCTTCTTCAAGATTATGCCTACAGGGCCTTTGTTCATCCCAAGACTGGAGTTCCTTATGATGCTCAGGTTCCTTCGAATTTGAGTGGAATTCAGATTGCAGCTTTGAGGCTCAGGAGTGGTAGCTTGTACAGGAGAGGTGTTGTGTACAAAGAGTTTGAGTTCCCAGTAGGAGTCAATGAGAGTCCATATGCGGAGAGGCTTGTTCTGGTGTACCAGAACTTAGGCAATTGGTCATTGAACTATTATCCATTACCAGGTTATTCATACTTAGCTCCAGTGTTGGGTCTCCTTGCTTATGATGCTATCAATTTATCAGCGAAAAATTTACCATACTTGGATATCACTGCAACTGTTGATCCCATAAAGATCAAATTTCAGGATGTGAAACCGACCCCTGATGGCACCGTGGCGAGTTGTGTTACTTTTGACTTAGATGGTTCTGTCAATTTCAGCAATGTGGGATCAGGCAATGCATGTTCAGCAGTCAAACAGGGGCACTTCGCTATAGTGGTTCAGTCCATTGCTCCTTCTCCATCACCAGTTGCCTCTGGAAGTCCCCCTACTCCTACTCCGGGTGGTCGAGGAAAGAAGAAGAGTAATTCAAAAACGTGGATAATTGTTGGGTCTGTGCTCGGTGGATTAGCATTGTTGGCATTGTTGGCATTCCTGGTACTCTGGGGGGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

265

Amino Acids

28.26

Weight (kDa)

9.24

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 32 - 209 5.3e-72 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08600
fragaria_vesca FvH4_3g04260 FvH4_6g09410
malus_domestica MD04G1178000.v1.1 MD12G1193600.v1.1
prunus_persica Prupe.6G297900_v2.0.a1
pyrus_communis pycom04g15700 pycom12g17980
rosa_chinensis RchiOBHm_Chr3g0459851
rosa_laevigata RLG00000025056
rosa_multiflora Rmu_sc0000240.1_g000040
rosa_roxburghii Rroxscaffold_6G00419960
rosa_rugosa Rorug03G0038100
rosa_samantha Rh3AG097000 Rh3BG099800 Rh3CG101600 Rh3DG101200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 106
Acc36I ACCTGC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 512
AccII CGCG 1 cut(s) 26
AciI CCGC 1 cut(s) 302
AclWI GGATC 2 cut(s) 461, 580
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 4 cut(s) 187, 198, 433, 482
AfaI GTAC 4 cut(s) 239, 257, 323, 783
AfiI CCNNNNNNNGG 4 cut(s) 155, 365, 392, 683
AgsI TTSAA 3 cut(s) 119, 349, 714
AjnI CCWGG 2 cut(s) 364, 777
AluBI AGCT 3 cut(s) 212, 234, 383
AluI AGCT 3 cut(s) 212, 234, 383
Alw21I GWGCWC 1 cut(s) 744
Alw26I GTCTC 2 cut(s) 26, 401
AlwI GGATC 2 cut(s) 461, 580
AoxI GGCC 2 cut(s) 88, 135
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 4 cut(s) 187, 198, 433, 482
AspS9I GGNCC 1 cut(s) 135
AsuC2I CCSGG 1 cut(s) 684
AsuHPI GGTGA 1 cut(s) 639
AsuII TTCGAA 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 609
BalI TGGCCA 1 cut(s) 90
BanI GGYRCC 1 cut(s) 512
BarI GAAGNNNNNNTAC 2 cut(s) 655, 687
Bbv12I GWGCWC 1 cut(s) 744
BbvI GCAGC 1 cut(s) 221
BccI CCATC 3 cut(s) 503, 539, 652
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 2 cut(s) 366, 779
BcnI CCSGG 1 cut(s) 684
BcoDI GTCTC 2 cut(s) 26, 401
BfaI CTAG 1 cut(s) 32
BfmI CTRYAG 2 cut(s) 130, 615
BfuAI ACCTGC 1 cut(s) 106
BglI GCCNNNNNGGC 1 cut(s) 134
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 3 cut(s) 366, 684, 779
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 2 cut(s) 180, 514
BmrFI CCNGG 3 cut(s) 366, 684, 779
BmrI ACTGGG 1 cut(s) 269
BmsI GCATC 3 cut(s) 18, 160, 400
BmuI ACTGGG 1 cut(s) 269
BpmI CTGGAG 2 cut(s) 177, 369
Bpu10I CCTNAGC 2 cut(s) 174, 221
Bpu14I TTCGAA 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 684
BsaI GGTCTC 1 cut(s) 401
BsaJI CCNNGG 1 cut(s) 516
BsaXI ACNNNNNCTCC 2 cut(s) 664, 694
Bsc4I CCNNNNNNNGG 4 cut(s) 155, 365, 392, 683
Bse1I ACTGG 5 cut(s) 84, 160, 275, 386, 650
Bse3DI GCAATG 3 cut(s) 571, 586, 630
BseBI CCWGG 2 cut(s) 366, 779
BseDI CCNNGG 1 cut(s) 516
BseGI GGATG 2 cut(s) 145, 496
BseLI CCNNNNNNNGG 4 cut(s) 155, 365, 392, 683
BseMI GCAATG 3 cut(s) 571, 586, 630
BseMII CTCAG 2 cut(s) 188, 235
BseNI ACTGG 5 cut(s) 84, 160, 275, 386, 650
BseSI GKGCMC 1 cut(s) 609
BseXI GCAGC 1 cut(s) 221
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 2 cut(s) 90, 137
BshNI GGYRCC 1 cut(s) 512
BsiHKAI GWGCWC 1 cut(s) 744
BsiSI CCGG 1 cut(s) 683
BslFI GGGAC 1 cut(s) 651
BslI CCNNNNNNNGG 4 cut(s) 155, 365, 392, 683
BsmAI GTCTC 2 cut(s) 26, 401
BsmFI GGGAC 1 cut(s) 651
BsmI GAATGC 1 cut(s) 773
BsnI GGCC 2 cut(s) 90, 137
Bso31I GGTCTC 1 cut(s) 401
Bsp119I TTCGAA 1 cut(s) 185
Bsp1286I GDGCHC 2 cut(s) 609, 744
Bsp1407I TGTACA 2 cut(s) 237, 255
Bsp143I GATC 3 cut(s) 466, 477, 572
Bsp68I TCGCGA 1 cut(s) 26
BspACI CCGC 1 cut(s) 302
BspANI GGCC 2 cut(s) 90, 137
BspCNI CTCAG 2 cut(s) 187, 234
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 2 cut(s) 180, 514
BspMI ACCTGC 1 cut(s) 106
BspPI GGATC 2 cut(s) 461, 580
BspT104I TTCGAA 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 512
BspTNI GGTCTC 1 cut(s) 401
BsrDI GCAATG 3 cut(s) 571, 586, 630
BsrGI TGTACA 2 cut(s) 237, 255
BsrI ACTGG 5 cut(s) 84, 160, 275, 386, 650
BssECI CCNNGG 1 cut(s) 516
BssMI GATC 3 cut(s) 466, 477, 572
Bst2UI CCWGG 2 cut(s) 366, 779
Bst4CI ACNGT 3 cut(s) 78, 463, 517
Bst6I CTCTTC 1 cut(s) 698
BstAUI TGTACA 2 cut(s) 237, 255
BstBI TTCGAA 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 5 cut(s) 174, 221, 331, 379, 541
BstDSI CCRYGG 1 cut(s) 516
BstF5I GGATG 2 cut(s) 145, 496
BstFNI CGCG 1 cut(s) 26
BstKTI GATC 3 cut(s) 469, 480, 575
BstMAI GTCTC 2 cut(s) 26, 401
BstMBI GATC 3 cut(s) 466, 477, 572
BstMWI GCNNNNNNNGC 5 cut(s) 134, 410, 590, 761, 770
BstNI CCWGG 2 cut(s) 366, 779
BstNSI RCATGY 1 cut(s) 588
BstSCI CCNGG 3 cut(s) 364, 682, 777
BstSFI CTRYAG 2 cut(s) 130, 615
BstSLI GKGCMC 1 cut(s) 609
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 221
BsuRI GGCC 2 cut(s) 90, 137
BtgI CCRYGG 1 cut(s) 516
BtgZI GCGATG 1 cut(s) 41
BtsCI GGATG 2 cut(s) 145, 496
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 3 cut(s) 91, 393, 453
BtuMI TCGCGA 1 cut(s) 26
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 135
CsiI ACCWGGT 1 cut(s) 364
Csp6I GTAC 4 cut(s) 238, 256, 322, 782
CviAII CATG 1 cut(s) 585
CviQI GTAC 4 cut(s) 238, 256, 322, 782
DdeI CTNAG 5 cut(s) 174, 221, 331, 379, 541
DpnI GATC 3 cut(s) 468, 479, 574
DpnII GATC 3 cut(s) 466, 477, 572
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 698
EarI CTCTTC 1 cut(s) 698
Eco31I GGTCTC 1 cut(s) 401
Eco32I GATATC 1 cut(s) 451
EcoO109I RGGNCCY 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 198
EcoRII CCWGG 2 cut(s) 364, 777
EcoRV GATATC 1 cut(s) 451
EcoT22I ATGCAT 1 cut(s) 586
FaeI CATG 1 cut(s) 588
FaqI GGGAC 1 cut(s) 651
FatI CATG 1 cut(s) 584
FauNDI CATATG 1 cut(s) 298
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 2 cut(s) 132, 503
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 1 cut(s) 32
GluI GCNGC 1 cut(s) 210
GsuI CTGGAG 2 cut(s) 177, 369
HaeIII GGCC 2 cut(s) 90, 137
HapII CCGG 1 cut(s) 683
Hin1II CATG 1 cut(s) 588
HinfI GANTC 2 cut(s) 282, 292
HpaII CCGG 1 cut(s) 683
HphI GGTGA 1 cut(s) 639
Hpy166II GTNNAC 2 cut(s) 256, 322
Hpy188I TCNGA 2 cut(s) 42, 204
Hpy188III TCNNGA 6 cut(s) 25, 104, 119, 223, 488, 660
Hpy8I GTNNAC 2 cut(s) 256, 322
HpyAV CCTTC 2 cut(s) 192, 648
HpyCH4III ACNGT 3 cut(s) 78, 463, 517
HpyCH4IV ACGT 1 cut(s) 719
HpyCH4V TGCA 3 cut(s) 209, 458, 584
HpyF10VI GCNNNNNNNGC 5 cut(s) 134, 410, 590, 761, 770
HpyF3I CTNAG 5 cut(s) 174, 221, 331, 379, 541
HpySE526I ACGT 1 cut(s) 719
Hsp92II CATG 1 cut(s) 588
Kzo9I GATC 3 cut(s) 466, 477, 572
LmnI GCTCC 2 cut(s) 388, 640
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 3 cut(s) 18, 160, 400
MabI ACCWGGT 1 cut(s) 364
MaeI CTAG 1 cut(s) 32
MaeII ACGT 1 cut(s) 719
MaeIII GTNAC 1 cut(s) 529
MalI GATC 3 cut(s) 468, 479, 574
MboI GATC 3 cut(s) 466, 477, 572
MboII GAAGA 3 cut(s) 107, 712, 715
MfeI CAATTG 1 cut(s) 337
MhlI GDGCHC 2 cut(s) 609, 744
MlsI TGGCCA 1 cut(s) 90
MluCI AATT 9 cut(s) 187, 198, 337, 418, 433, 482, 556, 709, 726
MluNI TGGCCA 1 cut(s) 90
MlyI GAGTC 2 cut(s) 291, 301
MnlI CCTC 5 cut(s) 210, 239, 300, 667, 686
Mox20I TGGCCA 1 cut(s) 90
Mph1103I ATGCAT 1 cut(s) 586
MscI TGGCCA 1 cut(s) 90
Msp20I TGGCCA 1 cut(s) 90
MspI CCGG 1 cut(s) 683
MspR9I CCNGG 3 cut(s) 366, 684, 779
MunI CAATTG 1 cut(s) 337
Mva1269I GAATGC 1 cut(s) 773
MvaI CCWGG 2 cut(s) 366, 779
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 5 cut(s) 134, 410, 590, 761, 770
NciI CCSGG 1 cut(s) 684
NdeI CATATG 1 cut(s) 298
NdeII GATC 3 cut(s) 466, 477, 572
NlaIII CATG 1 cut(s) 588
NlaIV GGNNCC 2 cut(s) 180, 514
NmeAIII GCCGAG 1 cut(s) 50
NruI TCGCGA 1 cut(s) 26
NsiI ATGCAT 1 cut(s) 586
NspI RCATGY 1 cut(s) 588
NspV TTCGAA 1 cut(s) 185
PaqCI CACCTGC 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PctI GAATGC 1 cut(s) 773
PkrI GCNGC 1 cut(s) 211
PleI GAGTC 2 cut(s) 290, 300
PpsI GAGTC 2 cut(s) 290, 300
Psp6I CCWGG 2 cut(s) 364, 777
PspGI CCWGG 2 cut(s) 364, 777
PspN4I GGNNCC 2 cut(s) 180, 514
PspPI GGNCC 1 cut(s) 135
RruI TCGCGA 1 cut(s) 26
RsaI GTAC 4 cut(s) 239, 257, 323, 783
RsaNI GTAC 4 cut(s) 238, 256, 322, 782
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 3 cut(s) 466, 477, 572
Sau96I GGNCC 1 cut(s) 135
SchI GAGTC 2 cut(s) 291, 301
ScrFI CCNGG 3 cut(s) 366, 684, 779
SduI GDGCHC 2 cut(s) 609, 744
SetI ASST 8 cut(s) 100, 180, 214, 236, 250, 370, 385, 722
SexAI ACCWGGT 1 cut(s) 364
SfaNI GCATC 3 cut(s) 18, 160, 400
SfcI CTRYAG 2 cut(s) 130, 615
SfuI TTCGAA 1 cut(s) 185
Sse9I AATT 9 cut(s) 187, 198, 337, 418, 433, 482, 556, 709, 726
SsiI CCGC 1 cut(s) 302
SspMI CTAG 1 cut(s) 32
StyD4I CCNGG 3 cut(s) 364, 682, 777
TaaI ACNGT 3 cut(s) 78, 463, 517
TaiI ACGT 1 cut(s) 722
TaqI TCGA 2 cut(s) 185, 691
TasI AATT 9 cut(s) 187, 198, 337, 418, 433, 482, 556, 709, 726
TatI WGTACW 2 cut(s) 237, 255
TscAI CASTG 3 cut(s) 91, 393, 460
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 2 cut(s) 134, 363
TspRI CASTG 3 cut(s) 91, 393, 460
XapI RAATTY 4 cut(s) 187, 198, 433, 482
XceI RCATGY 1 cut(s) 588
XspI CTAG 1 cut(s) 32
Zsp2I ATGCAT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.