FvH4_3g04260

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014156
Physical Location & Seq
Reverse (-)
2402870 .. 2403688
819 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04260.t1

Sequence Viewer

Length: 819 bp
ATGCTAGTGGTTCTGATATGGTTGTCACGGCTGTCATATCTCTCGGCAGAGGTGTCAAGCAGGGGTCAAGCAGCTGCTGCTCTCGACGTGCTTCTTCAAGATCATGCTTACAGGTCCTTTGTTCATCCCAAGACTGGAGTTCCCTATGATGCGCAGGTCCCTTGGAATTTAACTGGAGTTCAAATTGCAGCTTTGGGGCTCAGGAGTGGAAGCTTGTACATGAGAGGTGTTGTGTACAAAGAGTTTGAATTCCCAGTGGGAGTCAATGAGACTAGTCCATATGATGCGGAGAGGCTTGTTCTGGTGTACCAGAACTTAGGCAATTGGTCAGTGGTGTATTATCCATTACCAGGTTATTCTTACTTGGCTCCAGTGTTGGGTCTCCTTGCTTATGATGCTATCAATTTATCAGCGAAAAGATTACCATACTTGGATATCAAGGCAACTGTTGATCCCATAAAGATCAAATTTCAGGATGTGAAACCCAACCCTGCTAATGGAACTGTGGTCAAGTCACTCAAGTGTGTAACTTTTAATTTAGATGGCTCTATCAATTTCAGTGATGTGGGATCAGGCAATACATGTTTAGCAGTCCAACAGGGGCACTTATCTATTGCGGTTGACTCCATTGCTCCGGTCACCACCCCTAATAATGGAAGTCCCCCAAGTCCTACTCCTGGTGGCGGTAGTGGAAAGAAGAAGAGTAATTCAAAAACATGGATAATTGTTGGGTCTGTGCTCGGTGGATTGGCATTGTTGCCATTCCTGGTACTGTGGGTGCATAAATACAGAAAAAGAAAACATTTGGAAGAGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

273

Amino Acids

29.53

Weight (kDa)

9.27

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 24 - 207 1.9e-61 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08600
fragaria_vesca FvH4_3g04260 FvH4_6g09410
malus_domestica MD04G1178000.v1.1 MD12G1193600.v1.1
prunus_persica Prupe.6G297900_v2.0.a1
pyrus_communis pycom04g15700 pycom12g17980
rosa_chinensis RchiOBHm_Chr3g0459851
rosa_laevigata RLG00000025056
rosa_multiflora Rmu_sc0000240.1_g000040
rosa_roxburghii Rroxscaffold_6G00419960
rosa_rugosa Rorug03G0038100
rosa_samantha Rh3AG097000 Rh3BG099800 Rh3CG101600 Rh3DG101200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 153
Acc36I ACCTGC 1 cut(s) 145
AciI CCGC 3 cut(s) 287, 617, 684
AclWI GGATC 2 cut(s) 446, 577
AcsI RAATTY 3 cut(s) 166, 248, 467
AfaI GTAC 4 cut(s) 218, 236, 308, 771
AfiI CCNNNNNNNGG 7 cut(s) 134, 350, 377, 497, 653, 677, 683
AflIII ACRYGT 1 cut(s) 581
AgsI TTSAA 4 cut(s) 98, 182, 248, 711
AhlI ACTAGT 1 cut(s) 272
AjiI CACGTC 1 cut(s) 88
AjnI CCWGG 3 cut(s) 349, 676, 765
AleI CACNNNNGTG 1 cut(s) 520
AluBI AGCT 3 cut(s) 74, 191, 213
AluI AGCT 3 cut(s) 74, 191, 213
Alw21I GWGCWC 1 cut(s) 741
Alw26I GTCTC 2 cut(s) 263, 386
AlwI GGATC 2 cut(s) 446, 577
AlwNI CAGNNNCTG 1 cut(s) 77
ApeKI GCWGC 4 cut(s) 71, 74, 77, 188
ApoI RAATTY 3 cut(s) 166, 248, 467
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 2 cut(s) 114, 157
AsuHPI GGTGA 1 cut(s) 631
AvaII GGWCC 2 cut(s) 114, 157
BaeGI GKGCMC 1 cut(s) 606
BanII GRGCYC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 741
BbvI GCAGC 4 cut(s) 61, 64, 83, 200
BccI CCATC 1 cut(s) 536
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 3 cut(s) 351, 678, 767
BcoDI GTCTC 2 cut(s) 263, 386
BcuI ACTAGT 1 cut(s) 272
BfaI CTAG 2 cut(s) 5, 273
BfuAI ACCTGC 1 cut(s) 145
BisI GCNGC 4 cut(s) 72, 75, 78, 189
BlsI GCNGC 4 cut(s) 73, 76, 79, 190
Bme1390I CCNGG 3 cut(s) 351, 678, 767
Bme18I GGWCC 2 cut(s) 114, 157
BmgBI CACGTC 1 cut(s) 88
BmgT120I GGNCC 2 cut(s) 114, 157
BmiI GGNNCC 2 cut(s) 159, 369
BmrFI CCNGG 3 cut(s) 351, 678, 767
BmrI ACTGGG 1 cut(s) 248
BmsI GCATC 3 cut(s) 139, 274, 385
BmuI ACTGGG 1 cut(s) 248
BpmI CTGGAG 3 cut(s) 156, 195, 354
Bpu10I CCTNAGC 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 503
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 161
BsaWI WCCGGW 1 cut(s) 634
Bsc4I CCNNNNNNNGG 7 cut(s) 134, 350, 377, 497, 653, 677, 683
Bse1I ACTGG 4 cut(s) 139, 178, 254, 371
Bse3DI GCAATG 1 cut(s) 627
BseBI CCWGG 3 cut(s) 351, 678, 767
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 2 cut(s) 124, 481
BseLI CCNNNNNNNGG 7 cut(s) 134, 350, 377, 497, 653, 677, 683
BseMI GCAATG 1 cut(s) 627
BseMII CTCAG 1 cut(s) 214
BseNI ACTGG 4 cut(s) 139, 178, 254, 371
BseSI GKGCMC 1 cut(s) 606
BseXI GCAGC 4 cut(s) 61, 64, 83, 200
BsiHKAI GWGCWC 1 cut(s) 741
BsiSI CCGG 1 cut(s) 635
BslFI GGGAC 2 cut(s) 143, 645
BslI CCNNNNNNNGG 7 cut(s) 134, 350, 377, 497, 653, 677, 683
BsmAI GTCTC 2 cut(s) 263, 386
BsmFI GGGAC 2 cut(s) 143, 645
Bso31I GGTCTC 1 cut(s) 386
Bsp1286I GDGCHC 3 cut(s) 201, 606, 741
Bsp1407I TGTACA 2 cut(s) 216, 234
Bsp143I GATC 4 cut(s) 100, 451, 462, 569
BspACI CCGC 3 cut(s) 287, 617, 684
BspCNI CTCAG 1 cut(s) 213
BspLI GGNNCC 2 cut(s) 159, 369
BspMI ACCTGC 1 cut(s) 145
BspPI GGATC 2 cut(s) 446, 577
BspTNI GGTCTC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 627
BsrGI TGTACA 2 cut(s) 216, 234
BsrI ACTGG 4 cut(s) 139, 178, 254, 371
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 4 cut(s) 100, 451, 462, 569
BssT1I CCWWGG 1 cut(s) 161
Bst2UI CCWGG 3 cut(s) 351, 678, 767
Bst4CI ACNGT 3 cut(s) 448, 505, 774
Bst6I CTCTTC 2 cut(s) 695, 804
BstAPI GCANNNNNTGC 1 cut(s) 77
BstAUI TGTACA 2 cut(s) 216, 234
BstDEI CTNAG 2 cut(s) 200, 316
BstEII GGTNACC 1 cut(s) 637
BstF5I GGATG 2 cut(s) 124, 481
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 4 cut(s) 103, 454, 465, 572
BstMAI GTCTC 2 cut(s) 263, 386
BstMBI GATC 4 cut(s) 100, 451, 462, 569
BstMWI GCNNNNNNNGC 2 cut(s) 77, 395
BstNI CCWGG 3 cut(s) 351, 678, 767
BstNSI RCATGY 1 cut(s) 585
BstPI GGTNACC 1 cut(s) 637
BstSCI CCNGG 3 cut(s) 349, 676, 765
BstSLI GKGCMC 1 cut(s) 606
BstV1I GCAGC 4 cut(s) 61, 64, 83, 200
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 2 cut(s) 124, 481
BtsIMutI CAGTG 4 cut(s) 261, 336, 378, 565
BveI ACCTGC 1 cut(s) 145
CaiI CAGNNNCTG 1 cut(s) 77
CfoI GCGC 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 114, 157
CsiI ACCWGGT 1 cut(s) 349
Csp6I GTAC 4 cut(s) 217, 235, 307, 770
CviAII CATG 4 cut(s) 104, 220, 582, 717
CviJI RGCY 8 cut(s) 31, 74, 191, 199, 213, 295, 368, 546
CviKI_1 RGCY 8 cut(s) 31, 74, 191, 199, 213, 295, 368, 546
CviQI GTAC 4 cut(s) 217, 235, 307, 770
DdeI CTNAG 2 cut(s) 200, 316
DpnI GATC 4 cut(s) 102, 453, 464, 571
DpnII GATC 4 cut(s) 100, 451, 462, 569
Eam1104I CTCTTC 2 cut(s) 695, 804
EarI CTCTTC 2 cut(s) 695, 804
Eco130I CCWWGG 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 386
Eco32I GATATC 1 cut(s) 436
Eco47I GGWCC 2 cut(s) 114, 157
Eco91I GGTNACC 1 cut(s) 637
EcoO109I RGGNCCY 2 cut(s) 114, 157
EcoO65I GGTNACC 1 cut(s) 637
EcoRI GAATTC 1 cut(s) 248
EcoRII CCWGG 3 cut(s) 349, 676, 765
EcoRV GATATC 1 cut(s) 436
EcoT14I CCWWGG 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 4 cut(s) 107, 223, 585, 720
FaqI GGGAC 2 cut(s) 143, 645
FatI CATG 4 cut(s) 103, 219, 581, 716
FauNDI CATATG 1 cut(s) 280
Fnu4HI GCNGC 4 cut(s) 72, 75, 78, 189
FokI GGATG 2 cut(s) 111, 488
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 4 cut(s) 72, 75, 78, 189
FspBI CTAG 2 cut(s) 5, 273
FspI TGCGCA 1 cut(s) 153
GlaI GCGC 1 cut(s) 153
GluI GCNGC 4 cut(s) 72, 75, 78, 189
GsuI CTGGAG 3 cut(s) 156, 195, 354
HapII CCGG 1 cut(s) 635
HhaI GCGC 1 cut(s) 154
Hin1II CATG 4 cut(s) 107, 223, 585, 720
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HindIII AAGCTT 1 cut(s) 211
HinfI GANTC 2 cut(s) 261, 623
HpaII CCGG 1 cut(s) 635
HphI GGTGA 1 cut(s) 631
Hpy166II GTNNAC 3 cut(s) 235, 307, 622
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 4 cut(s) 83, 98, 202, 473
Hpy8I GTNNAC 3 cut(s) 235, 307, 622
Hpy99I CGWCG 1 cut(s) 89
HpyCH4III ACNGT 3 cut(s) 448, 505, 774
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 2 cut(s) 188, 781
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 395
HpyF3I CTNAG 2 cut(s) 200, 316
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 4 cut(s) 107, 223, 585, 720
HspAI GCGC 1 cut(s) 152
Kzo9I GATC 4 cut(s) 100, 451, 462, 569
LmnI GCTCC 2 cut(s) 373, 637
Lsp1109I GCAGC 4 cut(s) 61, 64, 83, 200
LweI GCATC 3 cut(s) 139, 274, 385
MabI ACCWGGT 1 cut(s) 349
MaeI CTAG 2 cut(s) 5, 273
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 4 cut(s) 24, 513, 526, 637
MalI GATC 4 cut(s) 102, 453, 464, 571
MboI GATC 4 cut(s) 100, 451, 462, 569
MboII GAAGA 3 cut(s) 86, 709, 712
MfeI CAATTG 1 cut(s) 322
MhlI GDGCHC 3 cut(s) 201, 606, 741
MlyI GAGTC 2 cut(s) 270, 617
MmeI TCCRAC 1 cut(s) 619
MnlI CCTC 3 cut(s) 43, 218, 285
MseI TTAA 2 cut(s) 170, 534
MslI CAYNNNNRTG 1 cut(s) 520
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 1 cut(s) 635
MspR9I CCNGG 3 cut(s) 351, 678, 767
MunI CAATTG 1 cut(s) 322
MvaI CCWGG 3 cut(s) 351, 678, 767
MwoI GCNNNNNNNGC 2 cut(s) 77, 395
NdeI CATATG 1 cut(s) 280
NdeII GATC 4 cut(s) 100, 451, 462, 569
NlaIII CATG 4 cut(s) 107, 223, 585, 720
NlaIV GGNNCC 2 cut(s) 159, 369
NmeAIII GCCGAG 1 cut(s) 23
NmuCI GTSAC 3 cut(s) 24, 513, 637
NsbI TGCGCA 1 cut(s) 153
NspI RCATGY 1 cut(s) 585
OliI CACNNNNGTG 1 cut(s) 520
PciI ACATGT 1 cut(s) 581
PkrI GCNGC 4 cut(s) 73, 76, 79, 190
PleI GAGTC 2 cut(s) 269, 617
PpsI GAGTC 2 cut(s) 269, 617
PpuMI RGGWCCY 2 cut(s) 114, 157
PscI ACATGT 1 cut(s) 581
Psp5II RGGWCCY 2 cut(s) 114, 157
Psp6I CCWGG 3 cut(s) 349, 676, 765
PspEI GGTNACC 1 cut(s) 637
PspGI CCWGG 3 cut(s) 349, 676, 765
PspN4I GGNNCC 2 cut(s) 159, 369
PspPI GGNCC 2 cut(s) 114, 157
PspPPI RGGWCCY 2 cut(s) 114, 157
PstNI CAGNNNCTG 1 cut(s) 77
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 4 cut(s) 218, 236, 308, 771
RsaNI GTAC 4 cut(s) 217, 235, 307, 770
RseI CAYNNNNRTG 1 cut(s) 520
SaqAI TTAA 2 cut(s) 170, 534
SatI GCNGC 4 cut(s) 72, 75, 78, 189
Sau3AI GATC 4 cut(s) 100, 451, 462, 569
Sau96I GGNCC 2 cut(s) 114, 157
SchI GAGTC 2 cut(s) 270, 617
ScrFI CCNGG 3 cut(s) 351, 678, 767
SduI GDGCHC 3 cut(s) 201, 606, 741
SetI ASST 9 cut(s) 54, 76, 90, 116, 159, 193, 215, 229, 355
SexAI ACCWGGT 1 cut(s) 349
SfaNI GCATC 3 cut(s) 139, 274, 385
SinI GGWCC 2 cut(s) 114, 157
SmiMI CAYNNNNRTG 1 cut(s) 520
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
SpeI ACTAGT 1 cut(s) 272
SsiI CCGC 3 cut(s) 287, 617, 684
SspMI CTAG 2 cut(s) 5, 273
StyD4I CCNGG 3 cut(s) 349, 676, 765
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 3 cut(s) 448, 505, 774
TaiI ACGT 1 cut(s) 90
TaqI TCGA 1 cut(s) 84
TatI WGTACW 2 cut(s) 216, 234
Tru1I TTAA 2 cut(s) 170, 534
Tru9I TTAA 2 cut(s) 170, 534
TscAI CASTG 4 cut(s) 261, 336, 378, 565
TseFI GTSAC 3 cut(s) 24, 513, 637
TseI GCWGC 4 cut(s) 71, 74, 77, 188
Tsp45I GTSAC 3 cut(s) 24, 513, 637
TspDTI ATGAA 1 cut(s) 113
TspRI CASTG 4 cut(s) 261, 336, 378, 565
VpaK11BI GGWCC 2 cut(s) 114, 157
XapI RAATTY 3 cut(s) 166, 248, 467
XceI RCATGY 1 cut(s) 585
XspI CTAG 2 cut(s) 5, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.