MD04G1178000.v1.1

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0014156
Physical Location & Seq
Reverse (-)
26903019 .. 26904650
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1178000.v1.1.491

Sequence Viewer

Length: 936 bp
ATGGGGCTTCTTTGCCGAAGTCTCTTGATGCTGTTTTTTGTGATATGTTTCTCCCGGCTGCCTGATGTGTCTGCACAATCCTCAAGAGGCTCAGCACCCGGTCTTGATGCGCTTCTGCAAGATTATGCCTACAGGGCTTTTGTTCATCCCAAGACTGGTGTTATATTTGATGGTAGTGTTCCCTCGAATTTGACTGGAATTCAGATTGCAGCAATGAGGCTCAGGAGTGGTAGCTTGTACAGAAAAGGTTTTGACATGTACAAAGAGTTTGAGATCCCCGAGGGTGTCACTGAGAGTCCGTATGTGGAGAGGCTTGTTTTGGTGTACCAAAACTTGGGCAATTGGTCAATGGTATATTACCCATTACCTGGTTACTCTTACTTAGCTCCAGTACTCGGTCTTCTTGCTTATGATGCTGGCAACCTATCAGCGAAAAATCTGCCCGAATTGGATATCAGGGCATCTGGTGATCCCATAACGATCGAATTCCAGGATGTGAAACCGGCCCCTGCAGGGACAATGGCAAAGTGTGTTTCGTTTGATTTGGACGGTTCAGTCAATTTCAGCAATGTGGAATCAGGCAATATATGCTCAACAGTCCAACAGGGGCACTTCTCTATAGCGGTTGAGTCCACTGCTCCTTCTCCAGCACCAGTCTCTCCAAGTCCTACCCCTAGTGGTAAACGAAAGAAGAAGAGTAATACGAAAGTGTGGATAATTGTTGGGTCTGTGGTGGGTGGATTAGCATTGTTGGCATTGTTGTCGTTCTTAGTACTATGGGCGAAAAAGTACAGGGAAAGGAAGAATTTACAACGGATGGAGAAGGCAGCAGATGTAGGAGAAGCCTTGCAAATGACCTCAGTCGGAGATGCAAAGGCACCTGCAGCAACATTCACGCGAACGCAACCAACCATCGAGACTGAATACGTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

312

Amino Acids

33.72

Weight (kDa)

8.55

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 33 - 210 1.2e-74 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08600
fragaria_vesca FvH4_3g04260 FvH4_6g09410
malus_domestica MD04G1178000.v1.1 MD12G1193600.v1.1
prunus_persica Prupe.6G297900_v2.0.a1
pyrus_communis pycom04g15700 pycom12g17980
rosa_chinensis RchiOBHm_Chr3g0459851
rosa_laevigata RLG00000025056
rosa_multiflora Rmu_sc0000240.1_g000040
rosa_roxburghii Rroxscaffold_6G00419960
rosa_rugosa Rorug03G0038100
rosa_samantha Rh3AG097000 Rh3BG099800 Rh3CG101600 Rh3DG101200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 889
AasI GACNNNNNNGTC 1 cut(s) 554
Acc36I ACCTGC 1 cut(s) 889
AccB1I GGYRCC 1 cut(s) 877
AccB7I CCANNNNNTGG 2 cut(s) 334, 368
AccII CGCG 1 cut(s) 898
AciI CCGC 1 cut(s) 623
AclWI GGATC 2 cut(s) 268, 464
AcsI RAATTY 4 cut(s) 187, 198, 485, 805
AfaI GTAC 6 cut(s) 239, 260, 326, 393, 774, 791
AfiI CCNNNNNNNGG 5 cut(s) 155, 334, 368, 395, 513
AflIII ACRYGT 1 cut(s) 255
AjnI CCWGG 2 cut(s) 367, 489
AluBI AGCT 2 cut(s) 234, 386
AluI AGCT 2 cut(s) 234, 386
Alw26I GTCTC 3 cut(s) 26, 661, 911
AlwI GGATC 2 cut(s) 268, 464
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 1 cut(s) 504
ApeKI GCWGC 4 cut(s) 58, 209, 827, 884
ApoI RAATTY 4 cut(s) 187, 198, 485, 805
Asp700I GAANNNNTTC 1 cut(s) 927
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 505
AsuC2I CCSGG 2 cut(s) 55, 99
AsuHPI GGTGA 1 cut(s) 479
AvaI CYCGRG 1 cut(s) 278
BaeGI GKGCMC 1 cut(s) 612
BanI GGYRCC 1 cut(s) 877
BarI GAAGNNNNNNTAC 2 cut(s) 384, 416
BbsI GAAGAC 1 cut(s) 392
BbvI GCAGC 4 cut(s) 45, 221, 839, 896
BccI CCATC 3 cut(s) 164, 811, 920
BcgI CGANNNNNNTGC 4 cut(s) 421, 455, 744, 778
BciT130I CCWGG 2 cut(s) 369, 491
BcnI CCSGG 2 cut(s) 55, 99
BcoDI GTCTC 3 cut(s) 26, 661, 911
BfaI CTAG 1 cut(s) 675
BfmI CTRYAG 4 cut(s) 130, 510, 618, 882
BfuAI ACCTGC 1 cut(s) 889
BglI GCCNNNNNGGC 1 cut(s) 134
BisI GCNGC 4 cut(s) 59, 210, 828, 885
BlpI GCTNAGC 1 cut(s) 91
BlsI GCNGC 4 cut(s) 60, 211, 829, 886
BmcAI AGTACT 2 cut(s) 393, 774
Bme1390I CCNGG 4 cut(s) 55, 99, 369, 491
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 505
BmiI GGNNCC 2 cut(s) 507, 879
BmrFI CCNGG 4 cut(s) 55, 99, 369, 491
BmsI GCATC 5 cut(s) 18, 97, 403, 470, 859
BoxI GACNNNNGTC 1 cut(s) 860
BpiI GAAGAC 1 cut(s) 392
BpmI CTGGAG 2 cut(s) 372, 630
Bpu10I CCTNAGC 1 cut(s) 221
Bpu1102I GCTNAGC 1 cut(s) 91
BpuEI CTTGAG 1 cut(s) 67
BpuMI CCSGG 2 cut(s) 55, 99
BsaJI CCNNGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 5 cut(s) 155, 334, 368, 395, 513
Bse118I RCCGGY 1 cut(s) 502
Bse1I ACTGG 4 cut(s) 160, 199, 389, 653
Bse3DI GCAATG 2 cut(s) 219, 574
BseBI CCWGG 2 cut(s) 369, 491
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 3 cut(s) 145, 499, 822
BseLI CCNNNNNNNGG 5 cut(s) 155, 334, 368, 395, 513
BseMI GCAATG 2 cut(s) 219, 574
BseMII CTCAG 4 cut(s) 105, 235, 282, 873
BseNI ACTGG 4 cut(s) 160, 199, 389, 653
BseSI GKGCMC 1 cut(s) 612
BseXI GCAGC 4 cut(s) 45, 221, 839, 896
BsgI GTGCAG 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 898
Bsh1285I CGRYCG 1 cut(s) 483
BshFI GGCC 1 cut(s) 506
BshNI GGYRCC 1 cut(s) 877
BsiEI CGRYCG 1 cut(s) 483
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 3 cut(s) 55, 99, 503
BslFI GGGAC 1 cut(s) 529
BslI CCNNNNNNNGG 5 cut(s) 155, 334, 368, 395, 513
BsmAI GTCTC 3 cut(s) 26, 661, 911
BsmFI GGGAC 1 cut(s) 529
BsnI GGCC 1 cut(s) 506
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 612
Bsp1407I TGTACA 2 cut(s) 237, 258
Bsp143I GATC 3 cut(s) 273, 469, 480
Bsp1720I GCTNAGC 1 cut(s) 91
BspACI CCGC 1 cut(s) 623
BspANI GGCC 1 cut(s) 506
BspCNI CTCAG 4 cut(s) 104, 234, 283, 872
BspFNI CGCG 1 cut(s) 898
BspLI GGNNCC 2 cut(s) 507, 879
BspMAI CTGCAG 2 cut(s) 514, 886
BspMI ACCTGC 1 cut(s) 889
BspPI GGATC 2 cut(s) 268, 464
BspT107I GGYRCC 1 cut(s) 877
BsrDI GCAATG 2 cut(s) 219, 574
BsrFI RCCGGY 1 cut(s) 502
BsrGI TGTACA 2 cut(s) 237, 258
BsrI ACTGG 4 cut(s) 160, 199, 389, 653
BssAI RCCGGY 1 cut(s) 502
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 3 cut(s) 273, 469, 480
Bst2UI CCWGG 2 cut(s) 369, 491
Bst4CI ACNGT 2 cut(s) 551, 598
Bst6I CTCTTC 1 cut(s) 689
BstAPI GCANNNNNTGC 1 cut(s) 588
BstAUI TGTACA 2 cut(s) 237, 258
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 6 cut(s) 91, 221, 291, 382, 769, 859
BstF5I GGATG 3 cut(s) 145, 499, 822
BstFNI CGCG 1 cut(s) 898
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 3 cut(s) 276, 472, 483
BstMAI GTCTC 3 cut(s) 26, 661, 911
BstMBI GATC 3 cut(s) 273, 469, 480
BstMCI CGRYCG 1 cut(s) 483
BstMWI GCNNNNNNNGC 5 cut(s) 134, 413, 588, 752, 884
BstNI CCWGG 2 cut(s) 369, 491
BstNSI RCATGY 1 cut(s) 259
BstPAI GACNNNNGTC 1 cut(s) 860
BstSCI CCNGG 4 cut(s) 53, 97, 367, 489
BstSFI CTRYAG 4 cut(s) 130, 510, 618, 882
BstSLI GKGCMC 1 cut(s) 612
BstUI CGCG 1 cut(s) 898
BstV1I GCAGC 4 cut(s) 45, 221, 839, 896
BstV2I GAAGAC 1 cut(s) 392
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BsuRI GGCC 1 cut(s) 506
BtsCI GGATG 3 cut(s) 145, 499, 822
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 2 cut(s) 288, 633
BveI ACCTGC 1 cut(s) 889
Cac8I GCNNGC 1 cut(s) 418
CfoI GCGC 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 502
Cfr13I GGNCC 1 cut(s) 505
CsiI ACCWGGT 1 cut(s) 367
Csp6I GTAC 6 cut(s) 238, 259, 325, 392, 773, 790
CviAII CATG 1 cut(s) 256
CviQI GTAC 6 cut(s) 238, 259, 325, 392, 773, 790
DdeI CTNAG 6 cut(s) 91, 221, 291, 382, 769, 859
DpnI GATC 3 cut(s) 275, 471, 482
DpnII GATC 3 cut(s) 273, 469, 480
DrdI GACNNNNNNGTC 1 cut(s) 554
DseDI GACNNNNNNGTC 1 cut(s) 554
Eam1104I CTCTTC 1 cut(s) 689
EarI CTCTTC 1 cut(s) 689
Eco32I GATATC 1 cut(s) 454
Eco88I CYCGRG 1 cut(s) 278
EcoRI GAATTC 2 cut(s) 198, 485
EcoRII CCWGG 2 cut(s) 367, 489
EcoRV GATATC 1 cut(s) 454
FaeI CATG 1 cut(s) 259
FaqI GGGAC 1 cut(s) 529
FatI CATG 1 cut(s) 255
Fnu4HI GCNGC 4 cut(s) 59, 210, 828, 885
FokI GGATG 3 cut(s) 132, 506, 829
Fsp4HI GCNGC 4 cut(s) 59, 210, 828, 885
FspBI CTAG 1 cut(s) 675
GlaI GCGC 1 cut(s) 111
GluI GCNGC 4 cut(s) 59, 210, 828, 885
GsuI CTGGAG 2 cut(s) 372, 630
HaeIII GGCC 1 cut(s) 506
HapII CCGG 3 cut(s) 55, 99, 503
HhaI GCGC 1 cut(s) 112
Hin1II CATG 1 cut(s) 259
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HinfI GANTC 3 cut(s) 295, 575, 629
HpaII CCGG 3 cut(s) 55, 99, 503
HphI GGTGA 1 cut(s) 479
Hpy166II GTNNAC 3 cut(s) 325, 633, 683
Hpy188I TCNGA 2 cut(s) 204, 866
Hpy188III TCNNGA 5 cut(s) 25, 84, 104, 223, 916
Hpy8I GTNNAC 3 cut(s) 325, 633, 683
HpyAV CCTTC 2 cut(s) 651, 817
HpyCH4III ACNGT 2 cut(s) 551, 598
HpyCH4IV ACGT 1 cut(s) 927
HpyCH4V TGCA 7 cut(s) 74, 118, 209, 512, 850, 872, 884
HpyF10VI GCNNNNNNNGC 5 cut(s) 134, 413, 588, 752, 884
HpyF3I CTNAG 6 cut(s) 91, 221, 291, 382, 769, 859
HpySE526I ACGT 1 cut(s) 927
Hsp92II CATG 1 cut(s) 259
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 3 cut(s) 273, 469, 480
LmnI GCTCC 2 cut(s) 391, 643
Lsp1109I GCAGC 4 cut(s) 45, 221, 839, 896
LweI GCATC 5 cut(s) 18, 97, 403, 470, 859
MabI ACCWGGT 1 cut(s) 367
MaeI CTAG 1 cut(s) 675
MaeII ACGT 1 cut(s) 927
MaeIII GTNAC 2 cut(s) 286, 371
MalI GATC 3 cut(s) 275, 471, 482
MboI GATC 3 cut(s) 273, 469, 480
MboII GAAGA 4 cut(s) 392, 703, 706, 814
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 1 cut(s) 273
MhlI GDGCHC 1 cut(s) 612
MluCI AATT 8 cut(s) 187, 198, 340, 446, 485, 559, 717, 805
MlyI GAGTC 2 cut(s) 304, 638
MmeI TCCRAC 2 cut(s) 625, 844
MnlI CCTC 7 cut(s) 80, 91, 193, 210, 274, 303, 868
MroXI GAANNNNTTC 1 cut(s) 927
MspI CCGG 3 cut(s) 55, 99, 503
MspR9I CCNGG 4 cut(s) 55, 99, 369, 491
MunI CAATTG 1 cut(s) 340
MvaI CCWGG 2 cut(s) 369, 491
MvnI CGCG 1 cut(s) 898
MwoI GCNNNNNNNGC 5 cut(s) 134, 413, 588, 752, 884
NciI CCSGG 2 cut(s) 55, 99
NdeII GATC 3 cut(s) 273, 469, 480
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 2 cut(s) 507, 879
NmuCI GTSAC 1 cut(s) 286
NspI RCATGY 1 cut(s) 259
PaqCI CACCTGC 1 cut(s) 889
PciI ACATGT 1 cut(s) 255
PdmI GAANNNNTTC 1 cut(s) 927
PfeI GAWTC 1 cut(s) 575
PflMI CCANNNNNTGG 2 cut(s) 334, 368
PfoI TCCNGGA 1 cut(s) 489
PkrI GCNGC 4 cut(s) 60, 211, 829, 886
Ple19I CGATCG 1 cut(s) 483
PleI GAGTC 2 cut(s) 303, 637
PpsI GAGTC 2 cut(s) 303, 637
PscI ACATGT 1 cut(s) 255
PshAI GACNNNNGTC 1 cut(s) 860
Psp6I CCWGG 2 cut(s) 367, 489
PspGI CCWGG 2 cut(s) 367, 489
PspN4I GGNNCC 2 cut(s) 507, 879
PspPI GGNCC 1 cut(s) 505
PstI CTGCAG 2 cut(s) 514, 886
PsuI RGATCY 1 cut(s) 273
PvuI CGATCG 1 cut(s) 483
RsaI GTAC 6 cut(s) 239, 260, 326, 393, 774, 791
RsaNI GTAC 6 cut(s) 238, 259, 325, 392, 773, 790
SatI GCNGC 4 cut(s) 59, 210, 828, 885
Sau3AI GATC 3 cut(s) 273, 469, 480
Sau96I GGNCC 1 cut(s) 505
SbfI CCTGCAGG 1 cut(s) 514
ScaI AGTACT 2 cut(s) 393, 774
SchI GAGTC 2 cut(s) 304, 638
ScrFI CCNGG 4 cut(s) 55, 99, 369, 491
SdaI CCTGCAGG 1 cut(s) 514
SduI GDGCHC 1 cut(s) 612
SetI ASST 8 cut(s) 236, 250, 370, 388, 426, 860, 883, 930
SexAI ACCWGGT 1 cut(s) 367
SfaNI GCATC 5 cut(s) 18, 97, 403, 470, 859
SfcI CTRYAG 4 cut(s) 130, 510, 618, 882
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
Sse8387I CCTGCAGG 1 cut(s) 514
Sse9I AATT 8 cut(s) 187, 198, 340, 446, 485, 559, 717, 805
SsiI CCGC 1 cut(s) 623
SspMI CTAG 1 cut(s) 675
StyD4I CCNGG 4 cut(s) 53, 97, 367, 489
TaaI ACNGT 2 cut(s) 551, 598
TaiI ACGT 1 cut(s) 930
TaqI TCGA 3 cut(s) 185, 483, 915
TaqII GACCGA 1 cut(s) 386
TasI AATT 8 cut(s) 187, 198, 340, 446, 485, 559, 717, 805
TatI WGTACW 5 cut(s) 237, 258, 391, 772, 789
TfiI GAWTC 1 cut(s) 575
TscAI CASTG 2 cut(s) 295, 640
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 4 cut(s) 58, 209, 827, 884
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 134
TspGWI ACGGA 2 cut(s) 288, 829
TspRI CASTG 2 cut(s) 295, 640
Van91I CCANNNNNTGG 2 cut(s) 334, 368
XapI RAATTY 4 cut(s) 187, 198, 485, 805
XceI RCATGY 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 927
XspI CTAG 1 cut(s) 675
ZrmI AGTACT 2 cut(s) 393, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.