Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005073

Physical Location & Seq

Genomic Coordinates Reverse (-)

2679435 .. 2686296

Gene Structure 6862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G08840.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1560 bp

ATGGCGTCCATGGCGACCGGCGTCAGTTTTTCGATGACTAGCGGCATAGGAGAAGGAGGATACGATGTTCATCGAGTAGCGACGGCTGCACGGACAACTCTGAAGCTGAATCAGAAGAACTCACTGAGCGAGAGTACATGCATGCTTTTGGGGATGAATAAGTATCGGGGATCCGGAGCTATACGAACCGTCTCGAAGGCTGTCGGTTACGGACAAGAGATGAGTAAGAGTCTGAGGGTGGGACTCATTTGCGGAGGTCCGTCGGCGGAGCGCGGGATTTCTCTCAACTCTGCTAGATCAGTTCTCGATCATATTCAGGGTGATGGTATAAACGTGAGCTGCTATTATATAGATCCTGATCTCAAAGCCTTTGCAATTTCATCCGCTCAGGTGTACTCGAATACTCCTTCAGATTTCGATTTTAAGCTGGAGAGTCTTGCACAGGGATTCTCGTCATTATCCGAATTGGCCGAGCATCTTGTTTCTGCTGTGGACATTGTTTTTCCAGTAATTCATGGTCGATTTGGTGAAGATGGGGGCATTCAGGAGCTGTTGGAAAGTCACAACATTCCATTTGTGGGGACTGGATCCCGTGAATGTTTTCGAGCATTTGACAAGTATGAAGCCTCTTTGGAGCTCAAGGAACTTGGTTTCATGACAGTACCAAACTACTTGGTGCAGGGAACTGGAGTAGACAAAAGTGAAATAGCACTGTGGTTTACAGATAACCAGCTGGATCTCGAGATGGGAAAAGTTGTGGTAAAACCAGCTAAAGCAGGTTCAAGCATTGGTGTCAAGGTTGCTTTTGGCGTAAATGATTCAATTAAAAAGGCTACTGAACTTATTCTAGAGGGAATTGATGATAGAGTTGTTGTTGAGGTGTTTATTGAAGATGCATATGAGTTCACTGCCATCGTCCTGGATGTGGGTTCTGGTTCTGTTTGCCATCCTGTTGTTTTGATGCCTACTGAGGTGCAACTTCAGTTTCATGGCATTGGTGATCCAAAGGAAAACGCAATCTTCGACTATCGGAGGAAGTATCTGCCGACACAGCAGGTCACCTATCACACTCCTCCACGTTTCCCTATCCATGTTATCAAAAGTATTCGTGAAGAGGCATCTCTTATATTTCAAAAGCTTGGTTTACGTGACTTTGCTCGCATTGATGGATGGTATTTGGCTCCCAATTCAAATTTATCATCACCTGTAAGTGAAACGCTTGGAGGAACCAAGTCAGGAGATATTATATTCACAGACATCAACCTGATAAGTGGCATGGAGCAAACTAGCTTTCTCTTCCAGCAGGCATCTAAGGTTGGATTTTCTCATTCAAACATTCTGCGAACAATCGTCCACCGTGCTTGCTCGAGGTTTCCCCATCTTGATTGGTATAATTATGGGTATAGTCAATTACTCCAAGGTTCAACAACCCTGGAAGTCTCTGAGGACCCCCAGAAAGTGTTTGTCATATTTGGAGGAGATACTTCAGAGCGGCAGGTGTCCGTCATGAGTGGAACAAATGTCTGGGTCAATTTGCAAAGATATGTAGATGTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dala_Dala_lig_C Dala_Dala_lig_N

Protein Analysis

519

Amino Acids

56.81

Weight (kDa)

5.45

Isoelectric Point (pI)

34.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dala_Dala_lig_N	PF01820	79 - 194	2.6e-24	D-ala D-ala ligase N-terminus
Dala_Dala_lig_C	PF07478	252 - 390	1.4e-14	D-ala D-ala ligase C-terminus
Dala_Dala_lig_N	PF01820	486 - 654	1.3e-17	D-ala D-ala ligase N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08840 AT3G08840 AT3G08840 AT3G08840 AT3G08840 AT3G08840 AT3G08840 AT3G08840 AT3G08840 AT3G08840 AT3G08840 AT3G08840 AT3G08840
fragaria_vesca	FvH4_6g10330
malus_domestica	MD04G1168900.v1.1 MD12G1182400.v1.1
prunus_persica	Prupe.6G287100_v2.0.a1
pyrus_communis	pycom04g14970 pycom12g17150
rosa_chinensis	RchiOBHm_Chr3g0461101
rosa_laevigata	RLG00000024952
rosa_multiflora	Rmu_sc0001521.1_g000056
rosa_roxburghii	Rroxscaffold_6G00418850
rosa_rugosa	Rorug03G0048200 Rorug03G0048300
rosa_samantha	Rh3AG105700 Rh3BG109700 Rh3CG111400 Rh3DG111400
rosa_wichuraiana	Rw3G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1486
Acc36I	ACCTGC	3 cut(s)	767, 1045, 1486
AccBSI	CCGCTC	2 cut(s)	386, 1492
AccI	GTMKAC	1 cut(s)	693
AccII	CGCG	1 cut(s)	273
AccIII	TCCGGA	1 cut(s)	173
AciI	CCGC	6 cut(s)	42, 252, 266, 273, 384, 1492
AclWI	GGATC	7 cut(s)	165, 178, 347, 582, 595, 744, 995
AcoI	YGGCCR	1 cut(s)	468
AcsI	RAATTY	1 cut(s)	1192
AcuI	CTGAAG	4 cut(s)	122, 393, 965, 1470
AcyI	GRCGYC	2 cut(s)	5, 21
AfaI	GTAC	3 cut(s)	136, 395, 663
AfiI	CCNNNNNNNGG	2 cut(s)	578, 925
AgsI	TTSAA	7 cut(s)	783, 822, 890, 1133, 1191, 1332, 1425
AjnI	CCWGG	2 cut(s)	918, 1431
AloI	GAACNNNNNNTCC	2 cut(s)	51, 83
Alw21I	GWGCWC	1 cut(s)	639
Alw26I	GTCTC	2 cut(s)	196, 1444
AlwI	GGATC	7 cut(s)	165, 178, 347, 582, 595, 744, 995
AlwNI	CAGNNNCTG	1 cut(s)	550
Ama87I	CYCGRG	2 cut(s)	740, 1366
Aor13HI	TCCGGA	1 cut(s)	173
AoxI	GGCC	1 cut(s)	468
ApeKI	GCWGC	2 cut(s)	86, 339
ApoI	RAATTY	1 cut(s)	1192
Asp700I	GAANNNNTTC	2 cut(s)	600, 843
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	257, 1447
AsuHPI	GGTGA	5 cut(s)	332, 539, 1010, 1051, 1194
AvaI	CYCGRG	2 cut(s)	740, 1366
AvaII	GGWCC	2 cut(s)	257, 1447
BamHI	GGATCC	2 cut(s)	170, 587
BanII	GRGCYC	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	639
BbvI	GCAGC	2 cut(s)	73, 326
BccI	CCATC	8 cut(s)	317, 527, 739, 920, 954, 1160, 1164, 1386
BceAI	ACGGC	1 cut(s)	99
BciT130I	CCWGG	2 cut(s)	920, 1433
BciVI	GTATCC	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	196, 1444
BfaI	CTAG	4 cut(s)	39, 294, 848, 1287
BfuAI	ACCTGC	3 cut(s)	767, 1045, 1486
BfuI	GTATCC	1 cut(s)	53
BisI	GCNGC	4 cut(s)	43, 87, 340, 1493
BlsI	GCNGC	4 cut(s)	44, 88, 341, 1494
Bme1390I	CCNGG	2 cut(s)	920, 1433
Bme18I	GGWCC	2 cut(s)	257, 1447
BmeT110I	CYCGRG	2 cut(s)	740, 1366
BmgT120I	GGNCC	2 cut(s)	257, 1447
BmiI	GGNNCC	5 cut(s)	172, 589, 1182, 1228, 1449
BmrFI	CCNGG	2 cut(s)	920, 1433
BmsI	GCATC	5 cut(s)	484, 883, 951, 1127, 1316
BoxI	GACNNNNGTC	1 cut(s)	20
BpmI	CTGGAG	2 cut(s)	449, 708
Bpu10I	CCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	623
BsaAI	YACGTR	1 cut(s)	1148
BsaBI	GATNNNNATC	2 cut(s)	69, 357
BsaHI	GRCGYC	2 cut(s)	5, 21
BsaJI	CCNNGG	3 cut(s)	9, 1417, 1431
BsaWI	WCCGGW	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	2 cut(s)	578, 925
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	3 cut(s)	506, 589, 691
Bse8I	GATNNNNATC	2 cut(s)	69, 357
BseAI	TCCGGA	1 cut(s)	173
BseBI	CCWGG	2 cut(s)	920, 1433
BseDI	CCNNGG	3 cut(s)	9, 1417, 1431
BseGI	GGATG	5 cut(s)	159, 380, 928, 946, 1175
BseJI	GATNNNNATC	2 cut(s)	69, 357
BseLI	CCNNNNNNNGG	2 cut(s)	578, 925
BseMII	CTCAG	5 cut(s)	116, 224, 401, 960, 1434
BseNI	ACTGG	3 cut(s)	506, 589, 691
BseRI	GAGGAG	2 cut(s)	1062, 1491
BseXI	GCAGC	2 cut(s)	73, 326
BsgI	GTGCAG	2 cut(s)	72, 698
Bsh1236I	CGCG	1 cut(s)	273
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	470
BsiEI	CGRYCG	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	639
BsiHKCI	CYCGRG	2 cut(s)	740, 1366
BsiSI	CCGG	2 cut(s)	18, 174
BslFI	GGGAC	2 cut(s)	255, 595
BslI	CCNNNNNNNGG	2 cut(s)	578, 925
BsmAI	GTCTC	2 cut(s)	196, 1444
BsmBI	CGTCTC	1 cut(s)	196
BsmFI	GGGAC	2 cut(s)	255, 595
BsmI	GAATGC	1 cut(s)	540
BsnI	GGCC	1 cut(s)	470
BsoBI	CYCGRG	2 cut(s)	740, 1366
Bsp1286I	GDGCHC	1 cut(s)	639
Bsp13I	TCCGGA	1 cut(s)	173
Bsp143I	GATC	8 cut(s)	170, 296, 307, 352, 358, 587, 736, 1000
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	6 cut(s)	42, 252, 266, 273, 384, 1492
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	5 cut(s)	117, 225, 400, 961, 1435
BspEI	TCCGGA	1 cut(s)	173
BspFNI	CGCG	1 cut(s)	273
BspHI	TCATGA	2 cut(s)	654, 1506
BspLI	GGNNCC	5 cut(s)	172, 589, 1182, 1228, 1449
BspMI	ACCTGC	3 cut(s)	767, 1045, 1486
BspPI	GGATC	7 cut(s)	165, 178, 347, 582, 595, 744, 995
BsrBI	CCGCTC	2 cut(s)	386, 1492
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	3 cut(s)	506, 589, 691
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	3 cut(s)	9, 1417, 1431
BssMI	GATC	8 cut(s)	170, 296, 307, 352, 358, 587, 736, 1000
BssNI	GRCGYC	2 cut(s)	5, 21
BssT1I	CCWWGG	2 cut(s)	9, 1417
Bst2UI	CCWGG	2 cut(s)	920, 1433
Bst4CI	ACNGT	4 cut(s)	190, 661, 714, 1358
Bst6I	CTCTTC	2 cut(s)	1107, 1301
BstACI	GRCGYC	2 cut(s)	5, 21
BstBAI	YACGTR	1 cut(s)	1148
BstC8I	GCNNGC	4 cut(s)	143, 1159, 1305, 1363
BstDEI	CTNAG	6 cut(s)	125, 233, 387, 969, 1311, 1443
BstDSI	CCRYGG	1 cut(s)	9
BstEII	GGTNACC	1 cut(s)	1057
BstF5I	GGATG	5 cut(s)	159, 380, 928, 946, 1175
BstFNI	CGCG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	8 cut(s)	173, 299, 310, 355, 361, 590, 739, 1003
BstMAI	GTCTC	2 cut(s)	196, 1444
BstMBI	GATC	8 cut(s)	170, 296, 307, 352, 358, 587, 736, 1000
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 86, 1051
BstNI	CCWGG	2 cut(s)	920, 1433
BstNSI	RCATGY	2 cut(s)	141, 145
BstPAI	GACNNNNGTC	1 cut(s)	20
BstPI	GGTNACC	1 cut(s)	1057
BstSCI	CCNGG	2 cut(s)	918, 1431
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	73, 326
BstX2I	RGATCY	4 cut(s)	170, 352, 587, 736
BstXI	CCANNNNNNTGG	1 cut(s)	919
BstYI	RGATCY	4 cut(s)	170, 352, 587, 736
BsuI	GTATCC	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	470
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	5 cut(s)	159, 380, 928, 946, 1175
BtsI	GCAGTG	1 cut(s)	906
BtsIMutI	CAGTG	3 cut(s)	122, 710, 906
BveI	ACCTGC	3 cut(s)	767, 1045, 1486
Cac8I	GCNNGC	4 cut(s)	143, 1159, 1305, 1363
CaiI	CAGNNNCTG	1 cut(s)	550
CciI	TCATGA	2 cut(s)	654, 1506
CfoI	GCGC	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	2 cut(s)	257, 1447
CseI	GACGC	1 cut(s)	10
Csp6I	GTAC	3 cut(s)	135, 394, 662
CspCI	CAANNNNNGTGG	2 cut(s)	1343, 1378
CviAII	CATG	9 cut(s)	10, 138, 142, 515, 655, 989, 1091, 1276, 1507
CviQI	GTAC	3 cut(s)	135, 394, 662
DdeI	CTNAG	6 cut(s)	125, 233, 387, 969, 1311, 1443
DpnI	GATC	8 cut(s)	172, 298, 309, 354, 360, 589, 738, 1002
DpnII	GATC	8 cut(s)	170, 296, 307, 352, 358, 587, 736, 1000
EaeI	YGGCCR	1 cut(s)	468
Eam1104I	CTCTTC	2 cut(s)	1107, 1301
EarI	CTCTTC	2 cut(s)	1107, 1301
EciI	GGCGGA	1 cut(s)	281
Ecl136II	GAGCTC	1 cut(s)	637
Eco130I	CCWWGG	2 cut(s)	9, 1417
Eco24I	GRGCYC	1 cut(s)	639
Eco47I	GGWCC	2 cut(s)	257, 1447
Eco53kI	GAGCTC	1 cut(s)	637
Eco57I	CTGAAG	4 cut(s)	122, 393, 965, 1470
Eco88I	CYCGRG	2 cut(s)	740, 1366
Eco91I	GGTNACC	1 cut(s)	1057
EcoICRI	GAGCTC	1 cut(s)	637
EcoO109I	RGGNCCY	1 cut(s)	1447
EcoO65I	GGTNACC	1 cut(s)	1057
EcoRII	CCWGG	2 cut(s)	918, 1431
EcoT14I	CCWWGG	2 cut(s)	9, 1417
EcoT22I	ATGCAT	2 cut(s)	143, 898
EcoT38I	GRGCYC	1 cut(s)	639
ErhI	CCWWGG	2 cut(s)	9, 1417
Esp3I	CGTCTC	1 cut(s)	196
FaeI	CATG	9 cut(s)	13, 141, 145, 518, 658, 992, 1094, 1279, 1510
FaqI	GGGAC	2 cut(s)	255, 595
FatI	CATG	9 cut(s)	9, 137, 141, 514, 654, 988, 1090, 1275, 1506
FauI	CCCGC	1 cut(s)	266
FauNDI	CATATG	1 cut(s)	898
FblI	GTMKAC	1 cut(s)	693
Fnu4HI	GCNGC	4 cut(s)	43, 87, 340, 1493
FokI	GGATG	5 cut(s)	166, 367, 933, 935, 1182
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	4 cut(s)	43, 87, 340, 1493
FspBI	CTAG	4 cut(s)	39, 294, 848, 1287
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	4 cut(s)	43, 87, 340, 1493
GsuI	CTGGAG	2 cut(s)	449, 708
HaeIII	GGCC	1 cut(s)	470
HapII	CCGG	2 cut(s)	18, 174
HgaI	GACGC	1 cut(s)	10
HhaI	GCGC	1 cut(s)	273
Hin1I	GRCGYC	2 cut(s)	5, 21
Hin1II	CATG	9 cut(s)	13, 141, 145, 518, 658, 992, 1094, 1279, 1510
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	1136
HinfI	GANTC	6 cut(s)	109, 229, 243, 433, 447, 818
HpaII	CCGG	2 cut(s)	18, 174
HphI	GGTGA	5 cut(s)	332, 539, 1010, 1051, 1194
Hpy166II	GTNNAC	7 cut(s)	394, 493, 694, 720, 906, 1145, 1354
Hpy188I	TCNGA	8 cut(s)	102, 114, 234, 412, 463, 1032, 1444, 1489
Hpy8I	GTNNAC	7 cut(s)	394, 493, 694, 720, 906, 1145, 1354
Hpy99I	CGWCG	2 cut(s)	85, 265
HpyAV	CCTTC	3 cut(s)	47, 190, 417
HpyCH4III	ACNGT	4 cut(s)	190, 661, 714, 1358
HpyCH4IV	ACGT	3 cut(s)	333, 1078, 1147
HpyCH4V	TGCA	8 cut(s)	89, 141, 374, 440, 679, 896, 976, 1537
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 86, 1051
HpyF3I	CTNAG	6 cut(s)	125, 233, 387, 969, 1311, 1443
HpySE526I	ACGT	3 cut(s)	333, 1078, 1147
Hsp92I	GRCGYC	2 cut(s)	5, 21
Hsp92II	CATG	9 cut(s)	13, 141, 145, 518, 658, 992, 1094, 1279, 1510
HspAI	GCGC	1 cut(s)	271
Kpn2I	TCCGGA	1 cut(s)	173
Kzo9I	GATC	8 cut(s)	170, 296, 307, 352, 358, 587, 736, 1000
LmnI	GCTCC	6 cut(s)	176, 268, 547, 634, 1186, 1279
Lsp1109I	GCAGC	2 cut(s)	73, 326
LweI	GCATC	5 cut(s)	484, 883, 951, 1127, 1316
MaeI	CTAG	4 cut(s)	39, 294, 848, 1287
MaeII	ACGT	3 cut(s)	333, 1078, 1147
MaeIII	GTNAC	4 cut(s)	206, 560, 1057, 1148
MalI	GATC	8 cut(s)	172, 298, 309, 354, 360, 589, 738, 1002
MbiI	CCGCTC	2 cut(s)	386, 1492
MboI	GATC	8 cut(s)	170, 296, 307, 352, 358, 587, 736, 1000
MboII	GAAGA	6 cut(s)	127, 542, 902, 1012, 1124, 1288
MflI	RGATCY	4 cut(s)	170, 352, 587, 736
MhlI	GDGCHC	1 cut(s)	639
MlyI	GAGTC	3 cut(s)	237, 238, 442
MmeI	TCCRAC	2 cut(s)	534, 1297
Mph1103I	ATGCAT	2 cut(s)	143, 898
MroI	TCCGGA	1 cut(s)	173
MroXI	GAANNNNTTC	2 cut(s)	600, 843
MseI	TTAA	2 cut(s)	423, 825
MspA1I	CMGCKG	1 cut(s)	733
MspI	CCGG	2 cut(s)	18, 174
MspR9I	CCNGG	2 cut(s)	920, 1433
Mva1269I	GAATGC	1 cut(s)	540
MvaI	CCWGG	2 cut(s)	920, 1433
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	11, 86, 1051
NcoI	CCATGG	1 cut(s)	9
NdeI	CATATG	1 cut(s)	898
NdeII	GATC	8 cut(s)	170, 296, 307, 352, 358, 587, 736, 1000
NlaIII	CATG	9 cut(s)	13, 141, 145, 518, 658, 992, 1094, 1279, 1510
NlaIV	GGNNCC	5 cut(s)	172, 589, 1182, 1228, 1449
NmeAIII	GCCGAG	1 cut(s)	496
NmuCI	GTSAC	3 cut(s)	560, 1057, 1148
NsiI	ATGCAT	2 cut(s)	143, 898
NspI	RCATGY	2 cut(s)	141, 145
PaeI	GCATGC	1 cut(s)	145
PaeR7I	CTCGAG	2 cut(s)	740, 1366
PagI	TCATGA	2 cut(s)	654, 1506
PaqCI	CACCTGC	1 cut(s)	1486
PcsI	WCGNNNNNNNCGW	1 cut(s)	1020
PctI	GAATGC	1 cut(s)	540
PdmI	GAANNNNTTC	2 cut(s)	600, 843
PfeI	GAWTC	3 cut(s)	109, 447, 818
PfoI	TCCNGGA	1 cut(s)	918
PkrI	GCNGC	4 cut(s)	44, 88, 341, 1494
PleI	GAGTC	3 cut(s)	237, 237, 441
PpsI	GAGTC	3 cut(s)	237, 237, 441
Ppu21I	YACGTR	1 cut(s)	1148
PpuMI	RGGWCCY	1 cut(s)	1447
PshAI	GACNNNNGTC	1 cut(s)	20
Psp124BI	GAGCTC	1 cut(s)	639
Psp5II	RGGWCCY	1 cut(s)	1447
Psp6I	CCWGG	2 cut(s)	918, 1431
PspEI	GGTNACC	1 cut(s)	1057
PspGI	CCWGG	2 cut(s)	918, 1431
PspN4I	GGNNCC	5 cut(s)	172, 589, 1182, 1228, 1449
PspPI	GGNCC	2 cut(s)	257, 1447
PspPPI	RGGWCCY	1 cut(s)	1447
PspXI	VCTCGAGB	1 cut(s)	1366
PstNI	CAGNNNCTG	1 cut(s)	550
PsuI	RGATCY	4 cut(s)	170, 352, 587, 736
PvuII	CAGCTG	1 cut(s)	733
RsaI	GTAC	3 cut(s)	136, 395, 663
RsaNI	GTAC	3 cut(s)	135, 394, 662
SacI	GAGCTC	1 cut(s)	639
SaqAI	TTAA	2 cut(s)	423, 825
SatI	GCNGC	4 cut(s)	43, 87, 340, 1493
Sau3AI	GATC	8 cut(s)	170, 296, 307, 352, 358, 587, 736, 1000
Sau96I	GGNCC	2 cut(s)	257, 1447
SchI	GAGTC	3 cut(s)	237, 238, 442
ScrFI	CCNGG	2 cut(s)	920, 1433
SduI	GDGCHC	1 cut(s)	639
SfaNI	GCATC	5 cut(s)	484, 883, 951, 1127, 1316
Sfr274I	CTCGAG	2 cut(s)	740, 1366
SinI	GGWCC	2 cut(s)	257, 1447
SlaI	CTCGAG	2 cut(s)	740, 1366
SmlI	CTYRAG	3 cut(s)	638, 740, 1366
SmoI	CTYRAG	3 cut(s)	638, 740, 1366
SphI	GCATGC	1 cut(s)	145
SsiI	CCGC	6 cut(s)	42, 252, 266, 273, 384, 1492
SspMI	CTAG	4 cut(s)	39, 294, 848, 1287
SstI	GAGCTC	1 cut(s)	639
StyD4I	CCNGG	2 cut(s)	918, 1431
StyI	CCWWGG	2 cut(s)	9, 1417
TaaI	ACNGT	4 cut(s)	190, 661, 714, 1358
TaiI	ACGT	3 cut(s)	336, 1081, 1150
TatI	WGTACW	2 cut(s)	134, 393
TauI	GCSGC	2 cut(s)	45, 1495
TfiI	GAWTC	3 cut(s)	109, 447, 818
Tru1I	TTAA	2 cut(s)	423, 825
Tru9I	TTAA	2 cut(s)	423, 825
TscAI	CASTG	3 cut(s)	129, 717, 913
TseFI	GTSAC	3 cut(s)	560, 1057, 1148
TseI	GCWGC	2 cut(s)	86, 339
Tsp45I	GTSAC	3 cut(s)	560, 1057, 1148
TspDTI	ATGAA	7 cut(s)	59, 170, 369, 503, 636, 643, 977
TspGWI	ACGGA	4 cut(s)	106, 225, 249, 1492
TspRI	CASTG	3 cut(s)	129, 717, 913
VpaK11BI	GGWCC	2 cut(s)	257, 1447
XapI	RAATTY	1 cut(s)	1192
XbaI	TCTAGA	1 cut(s)	847
XceI	RCATGY	2 cut(s)	141, 145
XhoI	CTCGAG	2 cut(s)	740, 1366
XmiI	GTMKAC	1 cut(s)	693
XmnI	GAANNNNTTC	2 cut(s)	600, 843
XspI	CTAG	4 cut(s)	39, 294, 848, 1287
Zsp2I	ATGCAT	2 cut(s)	143, 898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.