AT3G09320

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007849
Physical Location & Seq
Reverse (-)
2861379 .. 2864262
2884 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09320.1

Sequence Viewer

Length: 861 bp
ATGAAACGGAAAGGAGTCGGATTCTCTCTCCCCGTCACGGTGGTGATGTTGGTGATCGGTTTCATCTACTTTGCCTCGGTTTTCACTTTCATCGATCGGTGGTTCAGCCTCACTTCGTCTCCCGGAATCGCTAACGCCGCCGCTTTCACCGCTTTGGCTCTGATGTGTATATACAATTACTCCATCGCGGTTTTCAGGGATCCGGGTCGGGTTCCACTCAATTACATGCCGGATGTTGAAGATCCGGAGAGTCCTGTTCATGAGATTAAGCGAAAGGGAGGAGATTTGAGGTACTGCCAAAAGTGTTCACATTTCAAACCTCCGCGAGCTCACCATTGTCGAGTTTGCAAAAGATGTGTGCTTAGAATGGACCACCATTGTATCTGGATCAACAACTGCGTAGGACACACTAACTACAAGGTCTTCTTTGTCTTTGTTGTCTATGCGGTGACTGCATGTGTATATTCTCTGGTTTTACTTGTGGGAAGCCTTACTGTTGAACCTCAAGATGAAGAGGAAGAGATGGGAAGCTATTTAAGAACTATATATGTAATTTCAGCTTTTCTTCTTATCCCATTAAGCATCGCGTTAGGTGTTCTTCTGGGGTGGCACATCTACCTCATTTTACAAAACAAGACGACTATTGAGTACCATGAAGGAGTGAGAGCTATGTGGTTAGCAGAGAAAGGTGGGCAAGTCTATAAGCATCCATATGACATCGGCGCATATGAAAACCTAACCTTGATTTTGGGTCCGAACATACTTTCTTGGCTCTGCCCTACATCAAGGCATATCGGTTCTGGTGTGCGTTTTCGTACAGCTTTTGATTCAATCCCTGATTCATCTGAAACAAAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

286

Amino Acids

32.38

Weight (kDa)

8.47

Isoelectric Point (pI)

48.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 95 - 218 5.3e-41 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 188, 325, 587
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 6 cut(s) 138, 141, 150, 188, 323, 446
AclWI GGATC 4 cut(s) 194, 207, 236, 395
AfaI GTAC 3 cut(s) 293, 650, 817
AfiI CCNNNNNNNGG 1 cut(s) 37
AgsI TTSAA 4 cut(s) 239, 316, 500, 831
AleI CACNNNNGTG 1 cut(s) 41
AluBI AGCT 5 cut(s) 329, 531, 560, 668, 821
AluI AGCT 5 cut(s) 329, 531, 560, 668, 821
Alw21I GWGCWC 1 cut(s) 331
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 4 cut(s) 194, 207, 236, 395
Aor13HI TCCGGA 1 cut(s) 244
AspLEI GCGC 1 cut(s) 725
AspS9I GGNCC 2 cut(s) 370, 752
AsuC2I CCSGG 2 cut(s) 123, 204
AsuHPI GGTGA 5 cut(s) 55, 64, 139, 323, 460
AvaII GGWCC 2 cut(s) 370, 752
BaeI ACNNNNGTAYC 2 cut(s) 364, 397
BamHI GGATCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 331
BbsI GAAGAC 1 cut(s) 415
Bbv12I GWGCWC 1 cut(s) 331
BccI CCATC 2 cut(s) 191, 517
BcnI CCSGG 2 cut(s) 123, 204
BcoDI GTCTC 1 cut(s) 123
BisI GCNGC 2 cut(s) 138, 141
BlsI GCNGC 2 cut(s) 139, 142
Bme1390I CCNGG 2 cut(s) 123, 204
Bme18I GGWCC 2 cut(s) 370, 752
BmgT120I GGNCC 2 cut(s) 370, 752
BmiI GGNNCC 3 cut(s) 201, 213, 753
BmrFI CCNGG 2 cut(s) 123, 204
BmsI GCATC 2 cut(s) 591, 715
BpiI GAAGAC 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 489
BpuMI CCSGG 2 cut(s) 123, 204
Bsa29I ATCGAT 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 244
BsaXI ACNNNNNCTCC 4 cut(s) 103, 133, 164, 194
Bsc4I CCNNNNNNNGG 1 cut(s) 37
BseAI TCCGGA 1 cut(s) 244
BseCI ATCGAT 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 2 cut(s) 238, 706
BseLI CCNNNNNNNGG 1 cut(s) 37
BseRI GAGGAG 1 cut(s) 294
Bsh1236I CGCG 3 cut(s) 188, 325, 587
Bsh1285I CGRYCG 1 cut(s) 97
BshVI ATCGAT 1 cut(s) 93
BsiEI CGRYCG 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 331
BsiSI CCGG 4 cut(s) 123, 203, 230, 245
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 123
BsmBI CGTCTC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 331
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 5 cut(s) 54, 94, 199, 241, 387
BspACI CCGC 6 cut(s) 138, 141, 150, 188, 323, 446
BspDI ATCGAT 1 cut(s) 93
BspEI TCCGGA 1 cut(s) 244
BspFNI CGCG 3 cut(s) 188, 325, 587
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 3 cut(s) 201, 213, 753
BspPI GGATC 4 cut(s) 194, 207, 236, 395
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 5 cut(s) 54, 94, 199, 241, 387
Bst4CI ACNGT 2 cut(s) 40, 496
Bst6I CTCTTC 2 cut(s) 507, 513
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 1 cut(s) 362
BstF5I GGATG 2 cut(s) 238, 706
BstFNI CGCG 3 cut(s) 188, 325, 587
BstHHI GCGC 1 cut(s) 725
BstKTI GATC 5 cut(s) 57, 97, 202, 244, 390
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 5 cut(s) 54, 94, 199, 241, 387
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 3 cut(s) 137, 149, 452
BstNSI RCATGY 2 cut(s) 229, 459
BstSCI CCNGG 2 cut(s) 121, 202
BstUI CGCG 3 cut(s) 188, 325, 587
BstV2I GAAGAC 1 cut(s) 415
BstX2I RGATCY 2 cut(s) 199, 241
BstYI RGATCY 2 cut(s) 199, 241
Bsu15I ATCGAT 1 cut(s) 93
BsuTUI ATCGAT 1 cut(s) 93
BtgZI GCGATG 2 cut(s) 169, 568
BtsCI GGATG 2 cut(s) 238, 706
Cac8I GCNNGC 1 cut(s) 327
CciI TCATGA 1 cut(s) 259
CfoI GCGC 1 cut(s) 725
Cfr13I GGNCC 2 cut(s) 370, 752
ClaI ATCGAT 1 cut(s) 93
Csp6I GTAC 3 cut(s) 292, 649, 816
CviAII CATG 4 cut(s) 226, 260, 456, 653
CviJI RGCY 9 cut(s) 108, 158, 329, 489, 531, 560, 668, 772, 821
CviKI_1 RGCY 9 cut(s) 108, 158, 329, 489, 531, 560, 668, 772, 821
CviQI GTAC 3 cut(s) 292, 649, 816
DdeI CTNAG 1 cut(s) 362
DpnI GATC 5 cut(s) 56, 96, 201, 243, 389
DpnII GATC 5 cut(s) 54, 94, 199, 241, 387
Eam1104I CTCTTC 2 cut(s) 507, 513
EarI CTCTTC 2 cut(s) 507, 513
Ecl136II GAGCTC 1 cut(s) 329
Eco24I GRGCYC 1 cut(s) 331
Eco47I GGWCC 2 cut(s) 370, 752
Eco53kI GAGCTC 1 cut(s) 329
EcoICRI GAGCTC 1 cut(s) 329
EcoT38I GRGCYC 1 cut(s) 331
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 4 cut(s) 229, 263, 459, 656
FalI AAGNNNNNCTT 2 cut(s) 410, 442
FatI CATG 4 cut(s) 225, 259, 455, 652
FauNDI CATATG 2 cut(s) 712, 727
Fnu4HI GCNGC 2 cut(s) 138, 141
FokI GGATG 2 cut(s) 245, 693
FriOI GRGCYC 1 cut(s) 331
Fsp4HI GCNGC 2 cut(s) 138, 141
GlaI GCGC 1 cut(s) 724
GluI GCNGC 2 cut(s) 138, 141
HapII CCGG 4 cut(s) 123, 203, 230, 245
HhaI GCGC 1 cut(s) 725
Hin1II CATG 4 cut(s) 229, 263, 459, 656
Hin6I GCGC 1 cut(s) 723
HinP1I GCGC 1 cut(s) 723
HinfI GANTC 6 cut(s) 15, 21, 126, 250, 827, 839
HpaII CCGG 4 cut(s) 123, 203, 230, 245
HphI GGTGA 5 cut(s) 55, 64, 139, 323, 460
Hpy166II GTNNAC 1 cut(s) 308
Hpy188I TCNGA 4 cut(s) 20, 162, 756, 847
Hpy188III TCNNGA 4 cut(s) 245, 260, 385, 506
Hpy8I GTNNAC 1 cut(s) 308
HpyAV CCTTC 1 cut(s) 650
HpyCH4III ACNGT 2 cut(s) 40, 496
HpyCH4V TGCA 2 cut(s) 348, 455
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 149, 452
HpyF3I CTNAG 1 cut(s) 362
Hsp92II CATG 4 cut(s) 229, 263, 459, 656
HspAI GCGC 1 cut(s) 723
Kpn2I TCCGGA 1 cut(s) 244
Kzo9I GATC 5 cut(s) 54, 94, 199, 241, 387
LweI GCATC 2 cut(s) 591, 715
MaeIII GTNAC 2 cut(s) 34, 448
MalI GATC 5 cut(s) 56, 96, 201, 243, 389
MboI GATC 5 cut(s) 54, 94, 199, 241, 387
MboII GAAGA 6 cut(s) 251, 415, 524, 530, 557, 590
MflI RGATCY 2 cut(s) 199, 241
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 3 cut(s) 175, 220, 552
MlyI GAGTC 2 cut(s) 24, 259
MnlI CCTC 8 cut(s) 85, 119, 272, 282, 330, 508, 513, 629
MroI TCCGGA 1 cut(s) 244
MseI TTAA 3 cut(s) 267, 536, 578
MslI CAYNNNNRTG 2 cut(s) 41, 711
MspI CCGG 4 cut(s) 123, 203, 230, 245
MspR9I CCNGG 2 cut(s) 123, 204
MvnI CGCG 3 cut(s) 188, 325, 587
MwoI GCNNNNNNNGC 3 cut(s) 137, 149, 452
NciI CCSGG 2 cut(s) 123, 204
NdeI CATATG 2 cut(s) 712, 727
NdeII GATC 5 cut(s) 54, 94, 199, 241, 387
NlaIII CATG 4 cut(s) 229, 263, 459, 656
NlaIV GGNNCC 3 cut(s) 201, 213, 753
NmuCI GTSAC 2 cut(s) 34, 448
NspI RCATGY 2 cut(s) 229, 459
OliI CACNNNNGTG 1 cut(s) 41
PagI TCATGA 1 cut(s) 259
PfeI GAWTC 4 cut(s) 21, 126, 827, 839
PfoI TCCNGGA 1 cut(s) 121
PkrI GCNGC 2 cut(s) 139, 142
Ple19I CGATCG 1 cut(s) 97
PleI GAGTC 2 cut(s) 23, 258
PpsI GAGTC 2 cut(s) 23, 258
Psp124BI GAGCTC 1 cut(s) 331
PspN4I GGNNCC 3 cut(s) 201, 213, 753
PspPI GGNCC 2 cut(s) 370, 752
PsuI RGATCY 2 cut(s) 199, 241
PvuI CGATCG 1 cut(s) 97
RsaI GTAC 3 cut(s) 293, 650, 817
RsaNI GTAC 3 cut(s) 292, 649, 816
RseI CAYNNNNRTG 2 cut(s) 41, 711
SacI GAGCTC 1 cut(s) 331
SaqAI TTAA 3 cut(s) 267, 536, 578
SatI GCNGC 2 cut(s) 138, 141
Sau3AI GATC 5 cut(s) 54, 94, 199, 241, 387
Sau96I GGNCC 2 cut(s) 370, 752
SchI GAGTC 2 cut(s) 24, 259
ScrFI CCNGG 2 cut(s) 123, 204
SduI GDGCHC 1 cut(s) 331
SfaNI GCATC 2 cut(s) 591, 715
SinI GGWCC 2 cut(s) 370, 752
SmiMI CAYNNNNRTG 2 cut(s) 41, 711
SmlI CTYRAG 1 cut(s) 504
SmoI CTYRAG 1 cut(s) 504
Sse9I AATT 3 cut(s) 175, 220, 552
SsiI CCGC 6 cut(s) 138, 141, 150, 188, 323, 446
SstI GAGCTC 1 cut(s) 331
StyD4I CCNGG 2 cut(s) 121, 202
TaaI ACNGT 2 cut(s) 40, 496
TaqI TCGA 2 cut(s) 93, 340
TasI AATT 3 cut(s) 175, 220, 552
TauI GCSGC 2 cut(s) 140, 143
TfiI GAWTC 4 cut(s) 21, 126, 827, 839
Tru1I TTAA 3 cut(s) 267, 536, 578
Tru9I TTAA 3 cut(s) 267, 536, 578
TseFI GTSAC 2 cut(s) 34, 448
Tsp45I GTSAC 2 cut(s) 34, 448
TspDTI ATGAA 8 cut(s) 17, 52, 79, 248, 525, 669, 744, 831
TspGWI ACGGA 1 cut(s) 22
VpaK11BI GGWCC 2 cut(s) 370, 752
XceI RCATGY 2 cut(s) 229, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.