Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007849

Physical Location & Seq

Genomic Coordinates Reverse (-)

25006028 .. 25010553

Gene Structure 4526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G257900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGACGCGAAGCCTCAGCTTCTCTCTACCCGTAACCGTCGTCGTTTTAGCCATCGCCTACATTTACTTCTCCACAGTCTTCATATTCATAGACCGTTGGTTCGGTCTCATGTCGTCGCCGGGCTTATTGAACGCCGCCGTTTTCACCGGCGTGGCCCTCATGTGCGTCTTCAACTACACCGTCTCCGTCTTCAGGGATCCGGGTCGGGTCCCCTCCACGTACATGCCCGACGTCGAAGATTCGGGTAACCCTATCCACGAGATCAAGCGCAAGGGAGGGGATTTAAGATATTGCCAAAAGTGTTCTCATTATAAGCCAGCTCGAGCACATCATTGTCGTGTGTGCAAAAGATGTGTTTTGCGAATGGACCATCATTGCATATGGATTAATAATTGCGTCGGCCATGCAAACTATAAGGTCTTCTTCATCTTCGTTGTGTATGCTGTAATGGCATGCGTCTATTCCCTGGTCTTACTCATTGGTAGCCTAACTTATGATCCTGAAAAAGATGAGGAACAAACTGGAGACTCTTTTAGAACTGCATATGTCATTTCTGGGCTGTTGCTAGTTCCATTGTGTGTGGCACTGAGTGTTCTTTTAGGTTGGCATATCTACCTCATTTTGCAAAACAAGACCACAATTGAGTACCATGAAGGAGTGAGAGCTATGTGGCTTGCAGAGAAAGGAGGGCAAATCTATTCCCATCCATACGATCTTGGTGCCTATGAAAATTTGACAATGGTACTTGGTCCAAATCCCTGCAGTTGGGCACTCCCCGCATCGGGACATATTGGATCTGGACTCCGCTTCCGTACAGCCTATGATTATGCTTCTGCTGCATCAATGTCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

285

Amino Acids

31.84

Weight (kDa)

7.98

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09320
fragaria_vesca	FvH4_6g13410 FvH4_6g13410 FvH4_6g13410 FvH4_6g13410
malus_domestica	MD04G1131400.v1.1 MD12G1144500.v1.1
prunus_persica	Prupe.6G257900_v2.0.a1 Prupe.6G257900_v2.0.a1 Prupe.6G257900_v2.0.a1 Prupe.6G257900_v2.0.a1
pyrus_communis	pycom12g13900
rosa_chinensis	RchiOBHm_Chr3g0466281
rosa_laevigata	RLG00000024590
rosa_multiflora	Rmu_co8331013.1_g000001 Rmu_sc0000350.1_g000020 Rmu_sc0003480.1_g000019
rosa_roxburghii	Rroxscaffold_6G00414650
rosa_rugosa	Rorug03G0080700 Rorug03G0080800
rosa_samantha	Rh3AG127000 Rh3BG148300 Rh3DG149000
rosa_wichuraiana	Rw3G011990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	312
AatII	GACGTC	1 cut(s)	234
AccB1I	GGYRCC	1 cut(s)	719
AccII	CGCG	1 cut(s)	7
AciI	CCGC	3 cut(s)	135, 777, 805
AclWI	GGATC	4 cut(s)	191, 204, 491, 802
AcoI	YGGCCR	1 cut(s)	400
AcsI	RAATTY	1 cut(s)	730
AcuI	CTGAAG	1 cut(s)	175
AcyI	GRCGYC	1 cut(s)	231
AdeI	CACNNNGTG	1 cut(s)	590
AfaI	GTAC	4 cut(s)	221, 647, 744, 814
AfiI	CCNNNNNNNGG	4 cut(s)	192, 765, 781, 782
AgsI	TTSAA	2 cut(s)	130, 172
AjnI	CCWGG	1 cut(s)	465
AleI	CACNNNNGTG	1 cut(s)	149
AluBI	AGCT	3 cut(s)	18, 320, 665
AluI	AGCT	3 cut(s)	18, 320, 665
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	3 cut(s)	110, 187, 519
AlwI	GGATC	4 cut(s)	191, 204, 491, 802
Ama87I	CYCGRG	1 cut(s)	321
AoxI	GGCC	2 cut(s)	153, 400
ApeKI	GCWGC	1 cut(s)	836
ApoI	RAATTY	1 cut(s)	730
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AseI	ATTAAT	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	4 cut(s)	154, 208, 367, 749
AsuC2I	CCSGG	2 cut(s)	120, 201
AsuHPI	GGTGA	1 cut(s)	136
AvaI	CYCGRG	1 cut(s)	321
AvaII	GGWCC	3 cut(s)	208, 367, 749
BaeGI	GKGCMC	1 cut(s)	772
BamHI	GGATCC	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	719
BauI	CACGAG	1 cut(s)	257
BbsI	GAAGAC	4 cut(s)	70, 160, 181, 412
Bbv12I	GWGCWC	1 cut(s)	328
BbvCI	CCTCAGC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	823
BccI	CCATC	3 cut(s)	59, 378, 711
BceAI	ACGGC	1 cut(s)	122
BcgI	CGANNNNNNTGC	2 cut(s)	701, 735
BciT130I	CCWGG	1 cut(s)	467
BcnI	CCSGG	2 cut(s)	120, 201
BcoDI	GTCTC	3 cut(s)	110, 187, 519
BfaI	CTAG	1 cut(s)	566
BfmI	CTRYAG	1 cut(s)	760
BisI	GCNGC	2 cut(s)	135, 837
BlsI	GCNGC	2 cut(s)	136, 838
Bme1390I	CCNGG	3 cut(s)	120, 201, 467
Bme18I	GGWCC	3 cut(s)	208, 367, 749
BmeT110I	CYCGRG	1 cut(s)	321
BmgT120I	GGNCC	4 cut(s)	154, 208, 367, 749
BmiI	GGNNCC	4 cut(s)	198, 209, 210, 721
BmrFI	CCNGG	3 cut(s)	120, 201, 467
BmsI	GCATC	2 cut(s)	788, 848
BpiI	GAAGAC	4 cut(s)	70, 160, 181, 412
BpmI	CTGGAG	1 cut(s)	543
Bpu10I	CCTNAGC	1 cut(s)	14
BpuMI	CCSGG	2 cut(s)	120, 201
BsaAI	YACGTR	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	465
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	4 cut(s)	192, 765, 781, 782
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	526
Bse3DI	GCAATG	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	1 cut(s)	703
BseLI	CCNNNNNNNGG	4 cut(s)	192, 765, 781, 782
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	2 cut(s)	28, 578
BseNI	ACTGG	1 cut(s)	526
BseSI	GKGCMC	1 cut(s)	772
BseXI	GCAGC	1 cut(s)	823
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	2 cut(s)	155, 402
BshNI	GGYRCC	1 cut(s)	719
BsiHKAI	GWGCWC	1 cut(s)	328
BsiHKCI	CYCGRG	1 cut(s)	321
BsiSI	CCGG	3 cut(s)	119, 147, 200
BslFI	GGGAC	2 cut(s)	194, 798
BslI	CCNNNNNNNGG	4 cut(s)	192, 765, 781, 782
BsmAI	GTCTC	3 cut(s)	110, 187, 519
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	2 cut(s)	194, 798
BsnI	GGCC	2 cut(s)	155, 402
Bso31I	GGTCTC	1 cut(s)	110
BsoBI	CYCGRG	1 cut(s)	321
Bsp1286I	GDGCHC	2 cut(s)	328, 772
Bsp143I	GATC	5 cut(s)	196, 261, 496, 712, 794
BspACI	CCGC	3 cut(s)	135, 777, 805
BspANI	GGCC	2 cut(s)	155, 402
BspCNI	CTCAG	2 cut(s)	27, 579
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	4 cut(s)	198, 209, 210, 721
BspMAI	CTGCAG	1 cut(s)	764
BspPI	GGATC	4 cut(s)	191, 204, 491, 802
BspT107I	GGYRCC	1 cut(s)	719
BspTNI	GGTCTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	526
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	465
BssMI	GATC	5 cut(s)	196, 261, 496, 712, 794
BssNI	GRCGYC	1 cut(s)	231
BssSI	CACGAG	1 cut(s)	257
Bst2BI	CACGAG	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	4 cut(s)	37, 76, 95, 181
BstACI	GRCGYC	1 cut(s)	231
BstBAI	YACGTR	1 cut(s)	219
BstC8I	GCNNGC	3 cut(s)	318, 454, 675
BstDEI	CTNAG	2 cut(s)	14, 587
BstEII	GGTNACC	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	703
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	5 cut(s)	199, 264, 499, 715, 797
BstMAI	GTCTC	3 cut(s)	110, 187, 519
BstMBI	GATC	5 cut(s)	196, 261, 496, 712, 794
BstMWI	GCNNNNNNNGC	3 cut(s)	449, 776, 836
BstNI	CCWGG	1 cut(s)	467
BstNSI	RCATGY	2 cut(s)	226, 456
BstPI	GGTNACC	1 cut(s)	245
BstSCI	CCNGG	3 cut(s)	118, 199, 465
BstSFI	CTRYAG	1 cut(s)	760
BstSLI	GKGCMC	1 cut(s)	772
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	823
BstV2I	GAAGAC	4 cut(s)	70, 160, 181, 412
BstX2I	RGATCY	2 cut(s)	196, 794
BstYI	RGATCY	2 cut(s)	196, 794
BsuRI	GGCC	2 cut(s)	155, 402
BtgZI	GCGATG	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	703
BtsIMutI	CAGTG	1 cut(s)	584
Cac8I	GCNNGC	3 cut(s)	318, 454, 675
CfoI	GCGC	1 cut(s)	270
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	4 cut(s)	154, 208, 367, 749
CseI	GACGC	4 cut(s)	13, 154, 385, 445
Csp6I	GTAC	4 cut(s)	220, 646, 743, 813
CviAII	CATG	6 cut(s)	109, 160, 223, 404, 453, 650
CviQI	GTAC	4 cut(s)	220, 646, 743, 813
DdeI	CTNAG	2 cut(s)	14, 587
DpnI	GATC	5 cut(s)	198, 263, 498, 714, 796
DpnII	GATC	5 cut(s)	196, 261, 496, 712, 794
DraIII	CACNNNGTG	1 cut(s)	590
EaeI	YGGCCR	1 cut(s)	400
Eco31I	GGTCTC	1 cut(s)	110
Eco47I	GGWCC	3 cut(s)	208, 367, 749
Eco57I	CTGAAG	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	321
Eco91I	GGTNACC	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	208
EcoO65I	GGTNACC	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	465
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	6 cut(s)	112, 163, 226, 407, 456, 653
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FaqI	GGGAC	2 cut(s)	194, 798
FatI	CATG	6 cut(s)	108, 159, 222, 403, 452, 649
FauI	CCCGC	1 cut(s)	784
FauNDI	CATATG	2 cut(s)	380, 544
Fnu4HI	GCNGC	2 cut(s)	135, 837
FokI	GGATG	1 cut(s)	690
Fsp4HI	GCNGC	2 cut(s)	135, 837
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	2 cut(s)	135, 837
GsuI	CTGGAG	1 cut(s)	543
HaeIII	GGCC	2 cut(s)	155, 402
HapII	CCGG	3 cut(s)	119, 147, 200
HgaI	GACGC	4 cut(s)	13, 154, 385, 445
HhaI	GCGC	1 cut(s)	270
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	6 cut(s)	112, 163, 226, 407, 456, 653
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HinfI	GANTC	3 cut(s)	239, 527, 801
HpaII	CCGG	3 cut(s)	119, 147, 200
HphI	GGTGA	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	850
Hpy188III	TCNNGA	3 cut(s)	500, 783, 798
Hpy99I	CGWCG	6 cut(s)	41, 44, 118, 233, 236, 401
HpyAV	CCTTC	1 cut(s)	647
HpyCH4III	ACNGT	4 cut(s)	37, 76, 95, 181
HpyCH4IV	ACGT	2 cut(s)	218, 231
HpyCH4V	TGCA	8 cut(s)	345, 378, 407, 542, 625, 677, 762, 839
HpyF10VI	GCNNNNNNNGC	3 cut(s)	449, 776, 836
HpyF3I	CTNAG	2 cut(s)	14, 587
HpySE526I	ACGT	2 cut(s)	218, 231
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	6 cut(s)	112, 163, 226, 407, 456, 653
HspAI	GCGC	1 cut(s)	268
KflI	GGGWCCC	1 cut(s)	208
Kzo9I	GATC	5 cut(s)	196, 261, 496, 712, 794
Lsp1109I	GCAGC	1 cut(s)	823
LweI	GCATC	2 cut(s)	788, 848
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	2 cut(s)	218, 231
MaeIII	GTNAC	2 cut(s)	31, 245
MalI	GATC	5 cut(s)	198, 263, 498, 714, 796
MboI	GATC	5 cut(s)	196, 261, 496, 712, 794
MboII	GAAGA	7 cut(s)	70, 160, 181, 248, 412, 415, 421
MfeI	CAATTG	1 cut(s)	639
MflI	RGATCY	2 cut(s)	196, 794
MhlI	GDGCHC	2 cut(s)	328, 772
MluCI	AATT	3 cut(s)	391, 639, 730
MlyI	GAGTC	2 cut(s)	521, 795
MnlI	CCTC	7 cut(s)	23, 167, 223, 269, 505, 626, 680
MseI	TTAA	2 cut(s)	284, 387
MslI	CAYNNNNRTG	3 cut(s)	149, 221, 336
MspI	CCGG	3 cut(s)	119, 147, 200
MspR9I	CCNGG	3 cut(s)	120, 201, 467
MunI	CAATTG	1 cut(s)	639
MvaI	CCWGG	1 cut(s)	467
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	3 cut(s)	449, 776, 836
NciI	CCSGG	2 cut(s)	120, 201
NdeI	CATATG	2 cut(s)	380, 544
NdeII	GATC	5 cut(s)	196, 261, 496, 712, 794
NlaIII	CATG	6 cut(s)	112, 163, 226, 407, 456, 653
NlaIV	GGNNCC	4 cut(s)	198, 209, 210, 721
NspI	RCATGY	2 cut(s)	226, 456
OliI	CACNNNNGTG	1 cut(s)	149
PaeI	GCATGC	1 cut(s)	456
PaeR7I	CTCGAG	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	136, 838
PleI	GAGTC	2 cut(s)	521, 795
PpsI	GAGTC	2 cut(s)	521, 795
Ppu21I	YACGTR	1 cut(s)	219
PpuMI	RGGWCCY	1 cut(s)	208
PshBI	ATTAAT	1 cut(s)	387
PsiI	TTATAA	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	465
PspEI	GGTNACC	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	465
PspN4I	GGNNCC	4 cut(s)	198, 209, 210, 721
PspPI	GGNCC	4 cut(s)	154, 208, 367, 749
PspPPI	RGGWCCY	1 cut(s)	208
PspXI	VCTCGAGB	1 cut(s)	321
PstI	CTGCAG	1 cut(s)	764
PsuI	RGATCY	2 cut(s)	196, 794
RsaI	GTAC	4 cut(s)	221, 647, 744, 814
RsaNI	GTAC	4 cut(s)	220, 646, 743, 813
RseI	CAYNNNNRTG	3 cut(s)	149, 221, 336
SaqAI	TTAA	2 cut(s)	284, 387
SatI	GCNGC	2 cut(s)	135, 837
Sau3AI	GATC	5 cut(s)	196, 261, 496, 712, 794
Sau96I	GGNCC	4 cut(s)	154, 208, 367, 749
SchI	GAGTC	2 cut(s)	521, 795
ScrFI	CCNGG	3 cut(s)	120, 201, 467
SduI	GDGCHC	2 cut(s)	328, 772
SetI	ASST	8 cut(s)	20, 221, 234, 322, 420, 604, 618, 667
SfaNI	GCATC	2 cut(s)	788, 848
SfcI	CTRYAG	1 cut(s)	760
Sfr274I	CTCGAG	1 cut(s)	321
SgrAI	CRCCGGYG	1 cut(s)	146
SinI	GGWCC	3 cut(s)	208, 367, 749
SlaI	CTCGAG	1 cut(s)	321
SmiMI	CAYNNNNRTG	3 cut(s)	149, 221, 336
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
SphI	GCATGC	1 cut(s)	456
Sse9I	AATT	3 cut(s)	391, 639, 730
SsiI	CCGC	3 cut(s)	135, 777, 805
SspMI	CTAG	1 cut(s)	566
StyD4I	CCNGG	3 cut(s)	118, 199, 465
TaaI	ACNGT	4 cut(s)	37, 76, 95, 181
TaiI	ACGT	2 cut(s)	221, 234
TaqI	TCGA	2 cut(s)	234, 322
TaqII	GACCGA	1 cut(s)	92
TasI	AATT	3 cut(s)	391, 639, 730
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	2 cut(s)	284, 387
Tru9I	TTAA	2 cut(s)	284, 387
TscAI	CASTG	1 cut(s)	591
TseI	GCWGC	1 cut(s)	836
TspDTI	ATGAA	5 cut(s)	70, 76, 415, 666, 741
TspGWI	ACGGA	2 cut(s)	175, 800
TspRI	CASTG	1 cut(s)	591
VpaK11BI	GGWCC	3 cut(s)	208, 367, 749
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	1 cut(s)	730
XceI	RCATGY	2 cut(s)	226, 456
XhoI	CTCGAG	1 cut(s)	321
XspI	CTAG	1 cut(s)	566
ZraI	GACGTC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.