RchiOBHm_Chr3g0466281

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0007849
Physical Location & Seq
Forward (+)
12763841 .. 12769589
5749 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43237

Sequence Viewer

Length: 855 bp
ATGGCGCGAAGCGTCGGGTTCTCTCTGCCGGTGACCGTCGTCGTTGTCGCCATCGGCTACATCTACTTCTCCACCGTCTTCATTTTCGTAGACCGGTGGTTCGGTCTGTGGTCGTCGCCGGGGTTAATGAACGCCGCCATTTTCACCGCCGTGGCCGCCATGTGCGTCTACAACTACTCCATCTCCGTGTTCCGGGATCCGGGTCGGGTCCCCTCCACGTACATGCCCGATGTCGAGGATTCCGAAAACCCTATCCACGAGATCAAGCGCAAGGGAGGGGATTTGAGATATTGCCAAAAGTGTTCTCACTATAAGCCAGCTCGTGCACATCATTGTCGTGTATGCAAGAGATGCGTTTTACGAATGGACCATCATTGCATATGGATTAATAATTGCGTCGGCCATGCAAACTATAAGGTCTTCTTTGTGTTCGTTGTGTATGCTGTTATAGCATGCCTATATTCCCTGGTGTTGCTATTGGGTAGTCTGGCTAATGATTTTGAAAAGGATGAGGAGCAAAGTGCAGACTCTTTTACAACTGTATATATCATTTCTGGGCTATTGCTATTTCCCTTGTGTGTAGCACTGAGTGTTCTATTAGGTTGGCATATCTACCTCATTTTGCAAAACAAGACCACAATTGAGTACCATGAAGGGGTAAGAGCTATGTGGCTTGCAGAGAAAGGAGGACAAATCTATTCACATCCATATGATCTTGGTACCTATCAAAATTTGTCAATGGTACTGGGTCCAAATATCTTTAGTTGGTTACTCCCCACATCAGGACATATTGGATCAGGACTTCGCTTTCGTACAGCCTACGATTACCCTTCCAGTGGTTCAACGTCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

284

Amino Acids

32.0

Weight (kDa)

8.28

Isoelectric Point (pI)

49.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 94 - 217 1.8e-41 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 719
AccB1I GGYRCC 1 cut(s) 719
AccI GTMKAC 2 cut(s) 90, 168
AccII CGCG 1 cut(s) 7
AciI CCGC 3 cut(s) 135, 147, 156
AclWI GGATC 3 cut(s) 191, 204, 802
AcoI YGGCCR 2 cut(s) 153, 400
AcsI RAATTY 1 cut(s) 730
AdeI CACNNNGTG 1 cut(s) 590
AfaI GTAC 5 cut(s) 221, 647, 721, 744, 814
AfiI CCNNNNNNNGG 5 cut(s) 192, 199, 655, 782, 836
AgeI ACCGGT 1 cut(s) 93
AgsI TTSAA 2 cut(s) 503, 843
AjnI CCWGG 1 cut(s) 465
AleI CACNNNNGTG 1 cut(s) 149
AluBI AGCT 2 cut(s) 320, 665
AluI AGCT 2 cut(s) 320, 665
Alw21I GWGCWC 1 cut(s) 328
Alw44I GTGCAC 1 cut(s) 324
AlwI GGATC 3 cut(s) 191, 204, 802
AoxI GGCC 2 cut(s) 153, 400
ApaLI GTGCAC 1 cut(s) 324
ApoI RAATTY 1 cut(s) 730
ArsI GACNNNNNNTTYG 4 cut(s) 83, 115, 792, 824
AseI ATTAAT 1 cut(s) 387
AsiGI ACCGGT 1 cut(s) 93
Asp718I GGTACC 1 cut(s) 719
AspLEI GCGC 2 cut(s) 7, 270
AspS9I GGNCC 3 cut(s) 208, 367, 749
AsuC2I CCSGG 3 cut(s) 120, 194, 201
AsuHPI GGTGA 2 cut(s) 43, 136
AvaII GGWCC 3 cut(s) 208, 367, 749
BaeGI GKGCMC 1 cut(s) 328
BamHI GGATCC 1 cut(s) 196
BanI GGYRCC 1 cut(s) 719
BauI CACGAG 2 cut(s) 257, 321
BbsI GAAGAC 2 cut(s) 70, 412
Bbv12I GWGCWC 1 cut(s) 328
BccI CCATC 3 cut(s) 59, 188, 378
BceAI ACGGC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 467
BcnI CCSGG 3 cut(s) 120, 194, 201
BisI GCNGC 2 cut(s) 135, 156
BlsI GCNGC 2 cut(s) 136, 157
Bme1390I CCNGG 4 cut(s) 120, 194, 201, 467
Bme18I GGWCC 3 cut(s) 208, 367, 749
BmgT120I GGNCC 3 cut(s) 208, 367, 749
BmiI GGNNCC 5 cut(s) 198, 209, 210, 721, 750
BmrFI CCNGG 4 cut(s) 120, 194, 201, 467
BmrI ACTGGG 1 cut(s) 755
BmsI GCATC 1 cut(s) 341
BmuI ACTGGG 1 cut(s) 755
BoxI GACNNNNGTC 1 cut(s) 38
BpiI GAAGAC 2 cut(s) 70, 412
BpuMI CCSGG 3 cut(s) 120, 194, 201
BsaAI YACGTR 1 cut(s) 219
BsaJI CCNNGG 3 cut(s) 119, 150, 465
BsaWI WCCGGW 1 cut(s) 93
BsaXI ACNNNNNCTCC 4 cut(s) 161, 167, 191, 197
Bsc4I CCNNNNNNNGG 5 cut(s) 192, 199, 655, 782, 836
Bse118I RCCGGY 2 cut(s) 28, 93
Bse1I ACTGG 2 cut(s) 750, 834
Bse3DI GCAATG 1 cut(s) 373
BseBI CCWGG 1 cut(s) 467
BseDI CCNNGG 3 cut(s) 119, 150, 465
BseGI GGATG 2 cut(s) 514, 703
BseLI CCNNNNNNNGG 5 cut(s) 192, 199, 655, 782, 836
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 1 cut(s) 578
BseNI ACTGG 2 cut(s) 750, 834
BseRI GAGGAG 1 cut(s) 527
BseSI GKGCMC 1 cut(s) 328
BsgI GTGCAG 1 cut(s) 543
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 2 cut(s) 155, 402
BshNI GGYRCC 1 cut(s) 719
BshTI ACCGGT 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 328
BsiSI CCGG 5 cut(s) 29, 94, 119, 193, 200
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 5 cut(s) 192, 199, 655, 782, 836
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 2 cut(s) 155, 402
Bsp1286I GDGCHC 1 cut(s) 328
Bsp143I GATC 4 cut(s) 196, 261, 712, 794
BspACI CCGC 3 cut(s) 135, 147, 156
BspANI GGCC 2 cut(s) 155, 402
BspCNI CTCAG 1 cut(s) 579
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 5 cut(s) 198, 209, 210, 721, 750
BspPI GGATC 3 cut(s) 191, 204, 802
BspT107I GGYRCC 1 cut(s) 719
BsrDI GCAATG 1 cut(s) 373
BsrFI RCCGGY 2 cut(s) 28, 93
BsrI ACTGG 2 cut(s) 750, 834
BssAI RCCGGY 2 cut(s) 28, 93
BssECI CCNNGG 3 cut(s) 119, 150, 465
BssMI GATC 4 cut(s) 196, 261, 712, 794
BssSI CACGAG 2 cut(s) 257, 321
Bst2BI CACGAG 2 cut(s) 257, 321
Bst2UI CCWGG 1 cut(s) 467
Bst4CI ACNGT 3 cut(s) 37, 76, 541
BstAPI GCANNNNNTGC 1 cut(s) 351
BstBAI YACGTR 1 cut(s) 219
BstC8I GCNNGC 3 cut(s) 318, 454, 675
BstDEI CTNAG 1 cut(s) 587
BstDSI CCRYGG 1 cut(s) 150
BstEII GGTNACC 1 cut(s) 31
BstF5I GGATG 2 cut(s) 514, 703
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 2 cut(s) 7, 270
BstKTI GATC 4 cut(s) 199, 264, 715, 797
BstMBI GATC 4 cut(s) 196, 261, 712, 794
BstMWI GCNNNNNNNGC 3 cut(s) 155, 351, 449
BstNI CCWGG 1 cut(s) 467
BstNSI RCATGY 2 cut(s) 226, 456
BstPAI GACNNNNGTC 1 cut(s) 38
BstPI GGTNACC 1 cut(s) 31
BstSCI CCNGG 4 cut(s) 118, 192, 199, 465
BstSLI GKGCMC 1 cut(s) 328
BstUI CGCG 1 cut(s) 7
BstV2I GAAGAC 2 cut(s) 70, 412
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 2 cut(s) 155, 402
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 2 cut(s) 514, 703
BtsIMutI CAGTG 2 cut(s) 584, 841
Cac8I GCNNGC 3 cut(s) 318, 454, 675
CfoI GCGC 2 cut(s) 7, 270
Cfr10I RCCGGY 2 cut(s) 28, 93
Cfr13I GGNCC 3 cut(s) 208, 367, 749
CseI GACGC 2 cut(s) 154, 385
Csp6I GTAC 5 cut(s) 220, 646, 720, 743, 813
CspAI ACCGGT 1 cut(s) 93
CviAII CATG 5 cut(s) 160, 223, 404, 453, 650
CviQI GTAC 5 cut(s) 220, 646, 720, 743, 813
DdeI CTNAG 1 cut(s) 587
DpnI GATC 4 cut(s) 198, 263, 714, 796
DpnII GATC 4 cut(s) 196, 261, 712, 794
DraIII CACNNNGTG 1 cut(s) 590
EaeI YGGCCR 2 cut(s) 153, 400
Eco47I GGWCC 3 cut(s) 208, 367, 749
Eco91I GGTNACC 1 cut(s) 31
EcoO109I RGGNCCY 1 cut(s) 208
EcoO65I GGTNACC 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 465
FaeI CATG 5 cut(s) 163, 226, 407, 456, 653
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FaqI GGGAC 1 cut(s) 194
FatI CATG 5 cut(s) 159, 222, 403, 452, 649
FauNDI CATATG 2 cut(s) 380, 709
FblI GTMKAC 2 cut(s) 90, 168
Fnu4HI GCNGC 2 cut(s) 135, 156
FokI GGATG 2 cut(s) 521, 690
Fsp4HI GCNGC 2 cut(s) 135, 156
GlaI GCGC 2 cut(s) 6, 269
GluI GCNGC 2 cut(s) 135, 156
HaeIII GGCC 2 cut(s) 155, 402
HapII CCGG 5 cut(s) 29, 94, 119, 193, 200
HgaI GACGC 2 cut(s) 154, 385
HhaI GCGC 2 cut(s) 7, 270
Hin1II CATG 5 cut(s) 163, 226, 407, 456, 653
Hin6I GCGC 2 cut(s) 5, 268
HinP1I GCGC 2 cut(s) 5, 268
HinfI GANTC 2 cut(s) 239, 527
HpaII CCGG 5 cut(s) 29, 94, 119, 193, 200
HphI GGTGA 2 cut(s) 43, 136
Hpy166II GTNNAC 3 cut(s) 91, 169, 326
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 2 cut(s) 783, 798
Hpy8I GTNNAC 3 cut(s) 91, 169, 326
Hpy99I CGWCG 5 cut(s) 17, 41, 44, 118, 401
HpyAV CCTTC 2 cut(s) 647, 840
HpyCH4III ACNGT 3 cut(s) 37, 76, 541
HpyCH4IV ACGT 2 cut(s) 218, 845
HpyCH4V TGCA 7 cut(s) 326, 345, 378, 407, 524, 625, 677
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 351, 449
HpyF3I CTNAG 1 cut(s) 587
HpySE526I ACGT 2 cut(s) 218, 845
Hsp92II CATG 5 cut(s) 163, 226, 407, 456, 653
HspAI GCGC 2 cut(s) 5, 268
KflI GGGWCCC 1 cut(s) 208
KpnI GGTACC 1 cut(s) 723
Kzo9I GATC 4 cut(s) 196, 261, 712, 794
LmnI GCTCC 1 cut(s) 514
LweI GCATC 1 cut(s) 341
MaeII ACGT 2 cut(s) 218, 845
MaeIII GTNAC 2 cut(s) 31, 768
MalI GATC 4 cut(s) 198, 263, 714, 796
MboI GATC 4 cut(s) 196, 261, 712, 794
MboII GAAGA 2 cut(s) 70, 412
MfeI CAATTG 1 cut(s) 639
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 328
MluCI AATT 3 cut(s) 391, 639, 730
MlyI GAGTC 1 cut(s) 521
MnlI CCTC 6 cut(s) 223, 229, 269, 505, 626, 680
MseI TTAA 2 cut(s) 125, 387
MslI CAYNNNNRTG 5 cut(s) 149, 185, 221, 336, 708
MspI CCGG 5 cut(s) 29, 94, 119, 193, 200
MspR9I CCNGG 4 cut(s) 120, 194, 201, 467
MunI CAATTG 1 cut(s) 639
MvaI CCWGG 1 cut(s) 467
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 3 cut(s) 155, 351, 449
NciI CCSGG 3 cut(s) 120, 194, 201
NdeI CATATG 2 cut(s) 380, 709
NdeII GATC 4 cut(s) 196, 261, 712, 794
NlaIII CATG 5 cut(s) 163, 226, 407, 456, 653
NlaIV GGNNCC 5 cut(s) 198, 209, 210, 721, 750
NmuCI GTSAC 1 cut(s) 31
NspI RCATGY 2 cut(s) 226, 456
OliI CACNNNNGTG 1 cut(s) 149
PaeI GCATGC 1 cut(s) 456
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PfeI GAWTC 1 cut(s) 239
PfoI TCCNGGA 1 cut(s) 192
PinAI ACCGGT 1 cut(s) 93
PkrI GCNGC 2 cut(s) 136, 157
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
Ppu21I YACGTR 1 cut(s) 219
PpuMI RGGWCCY 1 cut(s) 208
PshAI GACNNNNGTC 1 cut(s) 38
PshBI ATTAAT 1 cut(s) 387
Psp5II RGGWCCY 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 465
PspEI GGTNACC 1 cut(s) 31
PspGI CCWGG 1 cut(s) 465
PspN4I GGNNCC 5 cut(s) 198, 209, 210, 721, 750
PspPI GGNCC 3 cut(s) 208, 367, 749
PspPPI RGGWCCY 1 cut(s) 208
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 5 cut(s) 221, 647, 721, 744, 814
RsaNI GTAC 5 cut(s) 220, 646, 720, 743, 813
RseI CAYNNNNRTG 5 cut(s) 149, 185, 221, 336, 708
SaqAI TTAA 2 cut(s) 125, 387
SatI GCNGC 2 cut(s) 135, 156
Sau3AI GATC 4 cut(s) 196, 261, 712, 794
Sau96I GGNCC 3 cut(s) 208, 367, 749
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 4 cut(s) 120, 194, 201, 467
SduI GDGCHC 1 cut(s) 328
SetI ASST 8 cut(s) 221, 322, 420, 604, 618, 667, 725, 848
SfaNI GCATC 1 cut(s) 341
SinI GGWCC 3 cut(s) 208, 367, 749
SmiMI CAYNNNNRTG 5 cut(s) 149, 185, 221, 336, 708
SphI GCATGC 1 cut(s) 456
Sse9I AATT 3 cut(s) 391, 639, 730
SsiI CCGC 3 cut(s) 135, 147, 156
StyD4I CCNGG 4 cut(s) 118, 192, 199, 465
TaaI ACNGT 3 cut(s) 37, 76, 541
TaiI ACGT 2 cut(s) 221, 848
TaqI TCGA 1 cut(s) 234
TaqII GACCGA 1 cut(s) 92
TasI AATT 3 cut(s) 391, 639, 730
TauI GCSGC 2 cut(s) 137, 158
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 2 cut(s) 125, 387
Tru9I TTAA 2 cut(s) 125, 387
TscAI CASTG 2 cut(s) 591, 841
TseFI GTSAC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 3 cut(s) 70, 143, 666
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 2 cut(s) 591, 841
VneI GTGCAC 1 cut(s) 324
VpaK11BI GGWCC 3 cut(s) 208, 367, 749
VspI ATTAAT 1 cut(s) 387
XapI RAATTY 1 cut(s) 730
XceI RCATGY 2 cut(s) 226, 456
XmiI GTMKAC 2 cut(s) 90, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.