Rmu_co8331013.1_g000001

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8331013.1
OG0007849
Physical Location & Seq
Forward (+)
1 .. 961
961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8331013.1_g000001.1.cds

Sequence Viewer

Length: 390 bp
ggaggggatttgagatattgccaaaagtgttctcactataagccagctcgtgcacatcattgtcgtgtatgcaagagatgcgttttacgaatggaccatcattgcatatggattaataattgcgtcggccatgcaaactataaggtcttctttgtgttcgttgtgtatgctgttatagcatgcctatattccctggtgttgctattgggtagtctggctaatgattttgaaaaggatgaggagcaaagtgcagactcttttacaactgtatatatcatttctgggctattgctatttcccttgtgtgtagcactgagtgttctattaggttggcatatctacctcattttgcaaaacaagaccacaattgaggttattaggaattactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

129

Amino Acids

14.82

Weight (kDa)

8.4

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 127
AdeI CACNNNGTG 1 cut(s) 317
AgsI TTSAA 1 cut(s) 230
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
Alw21I GWGCWC 1 cut(s) 55
Alw44I GTGCAC 1 cut(s) 51
AoxI GGCC 1 cut(s) 127
ApaLI GTGCAC 1 cut(s) 51
AseI ATTAAT 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 94
AvaII GGWCC 1 cut(s) 94
BaeGI GKGCMC 1 cut(s) 55
BauI CACGAG 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 55
BccI CCATC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 194
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 192
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 241
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 305
BseRI GAGGAG 1 cut(s) 254
BseSI GKGCMC 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 270
BshFI GGCC 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 55
BsnI GGCC 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 55
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 306
BsrDI GCAATG 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 192
BssSI CACGAG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 268
BstAPI GCANNNNNTGC 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 45, 181
BstDEI CTNAG 1 cut(s) 314
BstF5I GGATG 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 78, 176
BstNI CCWGG 1 cut(s) 194
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 139
BsuRI GGCC 1 cut(s) 129
BtsCI GGATG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 311
Cac8I GCNNGC 2 cut(s) 45, 181
Cfr13I GGNCC 1 cut(s) 94
CseI GACGC 1 cut(s) 112
CviAII CATG 2 cut(s) 131, 180
CviJI RGCY 5 cut(s) 43, 47, 129, 218, 286
CviKI_1 RGCY 5 cut(s) 43, 47, 129, 218, 286
DdeI CTNAG 1 cut(s) 314
DraIII CACNNNGTG 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 192
FaeI CATG 2 cut(s) 134, 183
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FatI CATG 2 cut(s) 130, 179
FauNDI CATATG 1 cut(s) 107
FokI GGATG 1 cut(s) 248
HaeIII GGCC 1 cut(s) 129
HgaI GACGC 1 cut(s) 112
Hin1II CATG 2 cut(s) 134, 183
HinfI GANTC 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 53
Hpy8I GTNNAC 1 cut(s) 53
Hpy99I CGWCG 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 6 cut(s) 53, 72, 105, 134, 251, 352
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 176
HpyF3I CTNAG 1 cut(s) 314
Hsp92II CATG 2 cut(s) 134, 183
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 5 cut(s) 57, 179, 200, 206, 267
LweI GCATC 1 cut(s) 68
MboII GAAGA 1 cut(s) 139
MfeI CAATTG 1 cut(s) 366
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 3 cut(s) 118, 366, 382
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 3 cut(s) 232, 353, 364
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 194
MunI CAATTG 1 cut(s) 366
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 2 cut(s) 78, 176
NdeI CATATG 1 cut(s) 107
NlaIII CATG 2 cut(s) 134, 183
NspI RCATGY 1 cut(s) 183
PaeI GCATGC 1 cut(s) 183
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
PshBI ATTAAT 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspPI GGNCC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 63
SaqAI TTAA 1 cut(s) 114
Sau96I GGNCC 1 cut(s) 94
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 1 cut(s) 55
SetI ASST 5 cut(s) 49, 147, 331, 345, 375
SfaNI GCATC 1 cut(s) 68
SinI GGWCC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 63
SphI GCATGC 1 cut(s) 183
Sse9I AATT 3 cut(s) 118, 366, 382
StyD4I CCNGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 268
TasI AATT 3 cut(s) 118, 366, 382
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 1 cut(s) 318
TspRI CASTG 1 cut(s) 318
VneI GTGCAC 1 cut(s) 51
VpaK11BI GGWCC 1 cut(s) 94
VspI ATTAAT 1 cut(s) 114
XceI RCATGY 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.