FvH4_6g13410

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007849
Physical Location & Seq
Forward (+)
8144948 .. 8150294
5347 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13410.t3

Sequence Viewer

Length: 855 bp
ATGGCGCGAAGCGTCGGGTTCTCTCTGCCGGTGACCGTCGTCGTCGTGGCCATCGGCTACATCTACTTCTCCACCGTCTTCGTTTTCGTAGACCGGTGGTTTGGCCTGTGGTCTTCGCCGGGGTTAATGAACGCCGCCATTTTCACCGCCGTGGCTGCCATGTGCATCTATAATTATACCGTATCCGTATTCCGGGATCCGGGTCGGGTCCCCTCCACGTACATGCCCGATGTCGAGGATTCCGAAAACCCTATCCACGAGATCAAGCGCAAGGGAGGGGATTTGAGATATTGCCAAAAGTGTTCTCATTATAAGCCACCTCGCGCACATCATTGTCGTGTATGCAAGAGATGCATTTTACGAATGGACCATCATTGCATATGGATCAATAATTGCGTTGGCCATACAAACTATAAGGTCTTCTTCGTGTTCGTTGTGTATGCTGTTATAGCATGCCTCTATTCCCTGGTGTTGCTATTGGGTAGTCTAGCTAATGATTTTGAAAAGGATGAGGAGCAAAGTGCAGACTCATATACAACTGTATATATCATTTCTGGGTTATTGCTGTTTCCCTTGTGTGTGGCACTGAGTGTGCTTTTAGGTTGGCATATCTACCTCATTTTGCAAAACAAGACCACGATTGAGTACCATGAAGGTGTAAGAGCTATGTGGCTTGCTGAGAAAGGGGGACAAATCTATTCGCATCCATATGATCTTGGTGCCTATCAAAATTTGTCAACGGTACTGGGTCCAAACATCTTTAGTTGGTTACTCCCAACATCAGGACATATTGGTTCAGGACTTCGCTTCTGTACAGCCTACGATTACCCTTCCAGTGGTTCAACATCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

285

Amino Acids

31.98

Weight (kDa)

7.97

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 94 - 217 7.2e-42 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 312
AccB1I GGYRCC 1 cut(s) 719
AccI GTMKAC 1 cut(s) 90
AccII CGCG 2 cut(s) 7, 324
AciI CCGC 2 cut(s) 135, 147
AclWI GGATC 3 cut(s) 191, 204, 392
AcoI YGGCCR 2 cut(s) 48, 400
AcsI RAATTY 1 cut(s) 730
AdeI CACNNNGTG 1 cut(s) 590
AfaI GTAC 4 cut(s) 221, 647, 744, 814
AfiI CCNNNNNNNGG 4 cut(s) 192, 199, 782, 836
AgeI ACCGGT 1 cut(s) 93
AgsI TTSAA 2 cut(s) 503, 843
AjnI CCWGG 1 cut(s) 465
AleI CACNNNNGTG 1 cut(s) 149
AluBI AGCT 2 cut(s) 491, 665
AluI AGCT 2 cut(s) 491, 665
AlwI GGATC 3 cut(s) 191, 204, 392
AoxI GGCC 3 cut(s) 48, 103, 400
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 730
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
AsiGI ACCGGT 1 cut(s) 93
AspLEI GCGC 3 cut(s) 7, 270, 326
AspS9I GGNCC 3 cut(s) 208, 367, 749
AsuC2I CCSGG 3 cut(s) 120, 194, 201
AsuHPI GGTGA 2 cut(s) 43, 136
AvaII GGWCC 3 cut(s) 208, 367, 749
BalI TGGCCA 2 cut(s) 50, 402
BamHI GGATCC 1 cut(s) 196
BanI GGYRCC 1 cut(s) 719
BauI CACGAG 1 cut(s) 257
BbsI GAAGAC 3 cut(s) 70, 105, 412
BbvI GCAGC 1 cut(s) 142
BccI CCATC 2 cut(s) 59, 378
BceAI ACGGC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 467
BciVI GTATCC 1 cut(s) 193
BcnI CCSGG 3 cut(s) 120, 194, 201
BfaI CTAG 1 cut(s) 488
BfuI GTATCC 1 cut(s) 193
BisI GCNGC 2 cut(s) 135, 156
BlsI GCNGC 2 cut(s) 136, 157
Bme1390I CCNGG 4 cut(s) 120, 194, 201, 467
Bme18I GGWCC 3 cut(s) 208, 367, 749
BmgT120I GGNCC 3 cut(s) 208, 367, 749
BmiI GGNNCC 5 cut(s) 198, 209, 210, 721, 750
BmrFI CCNGG 4 cut(s) 120, 194, 201, 467
BmrI ACTGGG 1 cut(s) 755
BmsI GCATC 3 cut(s) 174, 341, 712
BmuI ACTGGG 1 cut(s) 755
BoxI GACNNNNGTC 1 cut(s) 38
BpiI GAAGAC 3 cut(s) 70, 105, 412
BpuMI CCSGG 3 cut(s) 120, 194, 201
BsaAI YACGTR 1 cut(s) 219
BsaJI CCNNGG 3 cut(s) 119, 150, 465
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 4 cut(s) 192, 199, 782, 836
Bse118I RCCGGY 2 cut(s) 28, 93
Bse1I ACTGG 2 cut(s) 750, 834
Bse3DI GCAATG 1 cut(s) 373
BseBI CCWGG 1 cut(s) 467
BseDI CCNNGG 3 cut(s) 119, 150, 465
BseGI GGATG 2 cut(s) 514, 703
BseLI CCNNNNNNNGG 4 cut(s) 192, 199, 782, 836
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 2 cut(s) 578, 669
BseNI ACTGG 2 cut(s) 750, 834
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 543
Bsh1236I CGCG 2 cut(s) 7, 324
BshFI GGCC 3 cut(s) 50, 105, 402
BshNI GGYRCC 1 cut(s) 719
BshTI ACCGGT 1 cut(s) 93
BsiSI CCGG 5 cut(s) 29, 94, 119, 193, 200
BslFI GGGAC 2 cut(s) 194, 702
BslI CCNNNNNNNGG 4 cut(s) 192, 199, 782, 836
BsmFI GGGAC 2 cut(s) 194, 702
BsnI GGCC 3 cut(s) 50, 105, 402
Bsp1407I TGTACA 1 cut(s) 812
Bsp143I GATC 4 cut(s) 196, 261, 384, 712
BspACI CCGC 2 cut(s) 135, 147
BspANI GGCC 3 cut(s) 50, 105, 402
BspCNI CTCAG 2 cut(s) 579, 670
BspFNI CGCG 2 cut(s) 7, 324
BspLI GGNNCC 5 cut(s) 198, 209, 210, 721, 750
BspPI GGATC 3 cut(s) 191, 204, 392
BspT107I GGYRCC 1 cut(s) 719
BsrDI GCAATG 1 cut(s) 373
BsrFI RCCGGY 2 cut(s) 28, 93
BsrGI TGTACA 1 cut(s) 812
BsrI ACTGG 2 cut(s) 750, 834
BssAI RCCGGY 2 cut(s) 28, 93
BssECI CCNNGG 3 cut(s) 119, 150, 465
BssMI GATC 4 cut(s) 196, 261, 384, 712
BssSI CACGAG 1 cut(s) 257
Bst2BI CACGAG 1 cut(s) 257
Bst2UI CCWGG 1 cut(s) 467
Bst4CI ACNGT 5 cut(s) 37, 76, 181, 541, 742
BstAPI GCANNNNNTGC 1 cut(s) 351
BstAUI TGTACA 1 cut(s) 812
BstBAI YACGTR 1 cut(s) 219
BstC8I GCNNGC 2 cut(s) 454, 675
BstDEI CTNAG 2 cut(s) 587, 678
BstDSI CCRYGG 1 cut(s) 150
BstEII GGTNACC 1 cut(s) 31
BstF5I GGATG 2 cut(s) 514, 703
BstFNI CGCG 2 cut(s) 7, 324
BstHHI GCGC 3 cut(s) 7, 270, 326
BstKTI GATC 4 cut(s) 199, 264, 387, 715
BstMBI GATC 4 cut(s) 196, 261, 384, 712
BstMWI GCNNNNNNNGC 3 cut(s) 155, 351, 449
BstNI CCWGG 1 cut(s) 467
BstNSI RCATGY 2 cut(s) 226, 456
BstPAI GACNNNNGTC 1 cut(s) 38
BstPI GGTNACC 1 cut(s) 31
BstSCI CCNGG 4 cut(s) 118, 192, 199, 465
BstUI CGCG 2 cut(s) 7, 324
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 3 cut(s) 70, 105, 412
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuI GTATCC 1 cut(s) 193
BsuRI GGCC 3 cut(s) 50, 105, 402
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 2 cut(s) 514, 703
BtsIMutI CAGTG 2 cut(s) 584, 841
Cac8I GCNNGC 2 cut(s) 454, 675
CfoI GCGC 3 cut(s) 7, 270, 326
Cfr10I RCCGGY 2 cut(s) 28, 93
Cfr13I GGNCC 3 cut(s) 208, 367, 749
Csp6I GTAC 4 cut(s) 220, 646, 743, 813
CspAI ACCGGT 1 cut(s) 93
CviAII CATG 4 cut(s) 160, 223, 453, 650
CviQI GTAC 4 cut(s) 220, 646, 743, 813
DdeI CTNAG 2 cut(s) 587, 678
DpnI GATC 4 cut(s) 198, 263, 386, 714
DpnII GATC 4 cut(s) 196, 261, 384, 712
DraIII CACNNNGTG 1 cut(s) 590
EaeI YGGCCR 2 cut(s) 48, 400
Eco47I GGWCC 3 cut(s) 208, 367, 749
Eco91I GGTNACC 1 cut(s) 31
EcoO109I RGGNCCY 1 cut(s) 208
EcoO65I GGTNACC 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 465
EcoT22I ATGCAT 1 cut(s) 356
FaeI CATG 4 cut(s) 163, 226, 456, 653
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FaqI GGGAC 2 cut(s) 194, 702
FatI CATG 4 cut(s) 159, 222, 452, 649
FauNDI CATATG 2 cut(s) 380, 709
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 135, 156
FokI GGATG 2 cut(s) 521, 690
Fsp4HI GCNGC 2 cut(s) 135, 156
FspBI CTAG 1 cut(s) 488
GlaI GCGC 3 cut(s) 6, 269, 325
GluI GCNGC 2 cut(s) 135, 156
HaeIII GGCC 3 cut(s) 50, 105, 402
HapII CCGG 5 cut(s) 29, 94, 119, 193, 200
HhaI GCGC 3 cut(s) 7, 270, 326
Hin1II CATG 4 cut(s) 163, 226, 456, 653
Hin6I GCGC 3 cut(s) 5, 268, 324
HinP1I GCGC 3 cut(s) 5, 268, 324
HincII GTYRAC 1 cut(s) 738
HindII GTYRAC 1 cut(s) 738
HinfI GANTC 2 cut(s) 239, 527
HpaII CCGG 5 cut(s) 29, 94, 119, 193, 200
HphI GGTGA 2 cut(s) 43, 136
Hpy166II GTNNAC 2 cut(s) 91, 738
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 2 cut(s) 783, 798
Hpy8I GTNNAC 2 cut(s) 91, 738
Hpy99I CGWCG 4 cut(s) 17, 41, 44, 47
HpyAV CCTTC 2 cut(s) 647, 840
HpyCH4III ACNGT 5 cut(s) 37, 76, 181, 541, 742
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 6 cut(s) 165, 345, 354, 378, 524, 625
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 351, 449
HpyF3I CTNAG 2 cut(s) 587, 678
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 4 cut(s) 163, 226, 456, 653
HspAI GCGC 3 cut(s) 5, 268, 324
KflI GGGWCCC 1 cut(s) 208
Kzo9I GATC 4 cut(s) 196, 261, 384, 712
LmnI GCTCC 1 cut(s) 514
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 3 cut(s) 174, 341, 712
MaeI CTAG 1 cut(s) 488
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 2 cut(s) 31, 768
MalI GATC 4 cut(s) 198, 263, 386, 714
MboI GATC 4 cut(s) 196, 261, 384, 712
MboII GAAGA 4 cut(s) 70, 105, 412, 415
MflI RGATCY 1 cut(s) 196
MlsI TGGCCA 2 cut(s) 50, 402
MluCI AATT 3 cut(s) 172, 391, 730
MluNI TGGCCA 2 cut(s) 50, 402
MlyI GAGTC 1 cut(s) 521
MnlI CCTC 7 cut(s) 223, 229, 269, 330, 467, 505, 626
Mox20I TGGCCA 2 cut(s) 50, 402
Mph1103I ATGCAT 1 cut(s) 356
MscI TGGCCA 2 cut(s) 50, 402
MseI TTAA 1 cut(s) 125
MslI CAYNNNNRTG 6 cut(s) 149, 221, 336, 654, 708, 850
Msp20I TGGCCA 2 cut(s) 50, 402
MspI CCGG 5 cut(s) 29, 94, 119, 193, 200
MspR9I CCNGG 4 cut(s) 120, 194, 201, 467
MvaI CCWGG 1 cut(s) 467
MvnI CGCG 2 cut(s) 7, 324
MwoI GCNNNNNNNGC 3 cut(s) 155, 351, 449
NciI CCSGG 3 cut(s) 120, 194, 201
NdeI CATATG 2 cut(s) 380, 709
NdeII GATC 4 cut(s) 196, 261, 384, 712
NlaIII CATG 4 cut(s) 163, 226, 456, 653
NlaIV GGNNCC 5 cut(s) 198, 209, 210, 721, 750
NmuCI GTSAC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 356
NspI RCATGY 2 cut(s) 226, 456
OliI CACNNNNGTG 1 cut(s) 149
PaeI GCATGC 1 cut(s) 456
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PfeI GAWTC 1 cut(s) 239
PfoI TCCNGGA 1 cut(s) 192
PinAI ACCGGT 1 cut(s) 93
PkrI GCNGC 2 cut(s) 136, 157
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
Ppu21I YACGTR 1 cut(s) 219
PpuMI RGGWCCY 1 cut(s) 208
PshAI GACNNNNGTC 1 cut(s) 38
PsiI TTATAA 1 cut(s) 312
Psp5II RGGWCCY 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 465
PspEI GGTNACC 1 cut(s) 31
PspGI CCWGG 1 cut(s) 465
PspN4I GGNNCC 5 cut(s) 198, 209, 210, 721, 750
PspPI GGNCC 3 cut(s) 208, 367, 749
PspPPI RGGWCCY 1 cut(s) 208
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 4 cut(s) 221, 647, 744, 814
RsaNI GTAC 4 cut(s) 220, 646, 743, 813
RseI CAYNNNNRTG 6 cut(s) 149, 221, 336, 654, 708, 850
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 2 cut(s) 135, 156
Sau3AI GATC 4 cut(s) 196, 261, 384, 712
Sau96I GGNCC 3 cut(s) 208, 367, 749
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 4 cut(s) 120, 194, 201, 467
SetI ASST 8 cut(s) 221, 322, 420, 493, 604, 618, 658, 667
SfaNI GCATC 3 cut(s) 174, 341, 712
SinI GGWCC 3 cut(s) 208, 367, 749
SmiMI CAYNNNNRTG 6 cut(s) 149, 221, 336, 654, 708, 850
SphI GCATGC 1 cut(s) 456
Sse9I AATT 3 cut(s) 172, 391, 730
SsiI CCGC 2 cut(s) 135, 147
SspMI CTAG 1 cut(s) 488
StyD4I CCNGG 4 cut(s) 118, 192, 199, 465
TaaI ACNGT 5 cut(s) 37, 76, 181, 541, 742
TaiI ACGT 1 cut(s) 221
TaqI TCGA 1 cut(s) 234
TasI AATT 3 cut(s) 172, 391, 730
TatI WGTACW 1 cut(s) 812
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TscAI CASTG 2 cut(s) 591, 841
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 143, 666
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 2 cut(s) 591, 841
VpaK11BI GGWCC 3 cut(s) 208, 367, 749
XapI RAATTY 1 cut(s) 730
XceI RCATGY 2 cut(s) 226, 456
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 1 cut(s) 488
Zsp2I ATGCAT 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.