Rorug03G0080800

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003501
Physical Location & Seq
Forward (+)
6315400 .. 6325074
9675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0080800.1

Sequence Viewer

Length: 1302 bp
ATGAAAGCCACAGAGGAAGAAGAAGACTATGATCCTTTGTTGTTAGAGAATGGAAATCTTGAAAAGAAAGATAGGGAGGGTTTAGGCAATCCAACAGCGCCTTCTCTTAATCATCAAGCATTGCATTTGCCAAAACATAATATAGCCTTTCATGAACAAATCCCAACTGAAGAAAATGAAAACTACAGTGTCACATCTCAACAGAAGCAGCAGCAGCATTGCTTCGCCGTGTCCATGGCTTTCTCTTTCTCCATCTCCGCCATATTGCTTCTCGTTCTCCTCTCATTCTCCGTCACCGGCCAGCAACCCAGCTATAAAGGCCCCATCATCTTCAACTTCGGAGACTCCAACTCCGACACGGGCGGACTTGTCGCTGGACTCGGCTACACCATCAACCCCCCTTACGGCCGCACCTACTTCCGGCGATCCACCGGCCGGATGTCCGACGGACGCCTCATCATCGACTTCCTCTGCCAAAGTTTGAATACAAGCCTATTGGCTCCATATCTAGACTCTCTGTCAGGGTCCAAGTTCACAAATGGGGCGAATTTTGCAATAGTCGGGTCGTCTATCTTCCCTAAACGCATCCCTTTCTCTTTGAGCATCCAAGTCATGCAGTTCCTTCATTTCAAAGCTACTGCAGGCTCAAAAGACTTGATAGATGATGAAGGTTTTCGGAAAGCACTTTACATGATCGATATTGGACAAAATGACCTTGCTCAGTTGTTTTCCAAAAATCTCTCGTTCACGCAAATAACAGAGAAAATCCCACCAATTACTACAGAAATCAAGAAAGCCGTTAAGACTATATATGACCAAGGCGGGCGGAATTTTTGGATACACAACACTGGGCCATTGGGTTGTCTCCCTCAAAAACTTTCATCAGTCCAGCAGAGGGACATGGATACATATGGATGCCTCTCGACCTACAATGCGGCTGCAAGATTGTTCAATGTAGGATTGCGTCATACATGCGATGAGATGAGATTTGAATTGAAGGATGTTAAAGTAGTATATGTAGATGTATATGCCATCAAGTATGACCTTATTGCTAACTACACCAAATACGGTTTCACTAGTCCTCTAATGGCATGCTGTGGAAACGGAGGTCCTCCATACAACTATAACATGAGGCTGACGTGCGGCTATCCCGGTTCTCAGGTTTGCGAGGATGGATCCCAACTCATAAGTTGGGATGGGATTCACTACACTGAAGCTGCAAATACCATTGTAGCTTCAAAAATACTTTCCACGGATTATTCTATACCGCCAATTCCATTTGATTTCTTTGTTCGTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

433

Amino Acids

48.18

Weight (kDa)

6.01

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 110 - 415 8.4e-46 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 258, 363, 409, 822, 826, 935, 1143, 1268
AclWI GGATC 4 cut(s) 26, 420, 1170, 1183
AcoI YGGCCR 3 cut(s) 298, 406, 433
AcsI RAATTY 2 cut(s) 547, 829
AcuI CTGAAG 2 cut(s) 189, 1233
AcyI GRCGYC 1 cut(s) 451
AfiI CCNNNNNNNGG 4 cut(s) 404, 420, 435, 895
AgsI TTSAA 8 cut(s) 62, 334, 484, 631, 952, 992, 997, 1239
AhdI GACNNNNNGTC 1 cut(s) 517
AhlI ACTAGT 1 cut(s) 1076
AjiI CACGTC 1 cut(s) 1140
AjuI GAANNNNNNNTTGG 4 cut(s) 85, 117, 1055, 1087
AluBI AGCT 4 cut(s) 312, 635, 1217, 1235
AluI AGCT 4 cut(s) 312, 635, 1217, 1235
Alw26I GTCTC 2 cut(s) 336, 869
AlwI GGATC 4 cut(s) 26, 420, 1170, 1183
AoxI GGCC 5 cut(s) 298, 319, 406, 433, 851
ApeKI GCWGC 5 cut(s) 208, 211, 214, 938, 1217
ApoI RAATTY 2 cut(s) 547, 829
Asp700I GAANNNNTTC 1 cut(s) 672
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 4 cut(s) 320, 525, 851, 1109
AsuC2I CCSGG 1 cut(s) 1152
AsuHPI GGTGA 1 cut(s) 286
AvaII GGWCC 2 cut(s) 525, 1109
BamHI GGATCC 1 cut(s) 1175
BbsI GAAGAC 1 cut(s) 30
BbvI GCAGC 5 cut(s) 220, 223, 226, 925, 1204
BccI CCATC 6 cut(s) 260, 332, 398, 1040, 1166, 1190
BceAI ACGGC 3 cut(s) 212, 421, 782
BciVI GTATCC 2 cut(s) 831, 898
BcnI CCSGG 1 cut(s) 1152
BcoDI GTCTC 2 cut(s) 336, 869
BcuI ACTAGT 1 cut(s) 1076
BfaI CTAG 2 cut(s) 509, 1077
BfmI CTRYAG 3 cut(s) 184, 639, 780
BfoI RGCGCY 1 cut(s) 101
BfuI GTATCC 2 cut(s) 831, 898
BisI GCNGC 8 cut(s) 209, 212, 215, 409, 936, 939, 1144, 1218
BlsI GCNGC 8 cut(s) 210, 213, 216, 410, 937, 940, 1145, 1219
Bme1390I CCNGG 1 cut(s) 1152
Bme18I GGWCC 2 cut(s) 525, 1109
BmeRI GACNNNNNGTC 1 cut(s) 517
BmgBI CACGTC 1 cut(s) 1140
BmgT120I GGNCC 4 cut(s) 320, 525, 851, 1109
BmiI GGNNCC 4 cut(s) 322, 501, 526, 1177
BmrFI CCNGG 1 cut(s) 1152
BmrI ACTGGG 1 cut(s) 858
BmsI GCATC 3 cut(s) 594, 612, 905
BmuI ACTGGG 1 cut(s) 858
BpiI GAAGAC 1 cut(s) 30
BpuMI CCSGG 1 cut(s) 1152
Bsa29I ATCGAT 1 cut(s) 696
BsaHI GRCGYC 1 cut(s) 451
BsaJI CCNNGG 3 cut(s) 234, 817, 1251
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bsc4I CCNNNNNNNGG 4 cut(s) 404, 420, 435, 895
Bse118I RCCGGY 2 cut(s) 296, 431
Bse1I ACTGG 1 cut(s) 853
Bse3DI GCAATG 2 cut(s) 119, 217
BseCI ATCGAT 1 cut(s) 696
BseDI CCNNGG 3 cut(s) 234, 817, 1251
BseGI GGATG 7 cut(s) 444, 585, 603, 920, 1006, 1177, 1201
BseLI CCNNNNNNNGG 4 cut(s) 404, 420, 435, 895
BseMI GCAATG 2 cut(s) 119, 217
BseMII CTCAG 2 cut(s) 734, 1172
BseNI ACTGG 1 cut(s) 853
BseRI GAGGAG 1 cut(s) 269
BseX3I CGGCCG 2 cut(s) 406, 433
BseXI GCAGC 5 cut(s) 220, 223, 226, 925, 1204
BseYI CCCAGC 1 cut(s) 308
Bsh1285I CGRYCG 2 cut(s) 409, 436
BshFI GGCC 5 cut(s) 300, 321, 408, 435, 853
BshVI ATCGAT 1 cut(s) 696
BsiEI CGRYCG 2 cut(s) 409, 436
BsiSI CCGG 5 cut(s) 297, 421, 432, 436, 1152
BslFI GGGAC 1 cut(s) 911
BslI CCNNNNNNNGG 4 cut(s) 404, 420, 435, 895
BsmAI GTCTC 2 cut(s) 336, 869
BsmFI GGGAC 1 cut(s) 911
BsnI GGCC 5 cut(s) 300, 321, 408, 435, 853
Bsp143I GATC 4 cut(s) 31, 425, 693, 1175
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 8 cut(s) 258, 363, 409, 822, 826, 935, 1143, 1268
BspANI GGCC 5 cut(s) 300, 321, 408, 435, 853
BspCNI CTCAG 2 cut(s) 733, 1171
BspDI ATCGAT 1 cut(s) 696
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 4 cut(s) 322, 501, 526, 1177
BspMAI CTGCAG 1 cut(s) 643
BspPI GGATC 4 cut(s) 26, 420, 1170, 1183
BsrDI GCAATG 2 cut(s) 119, 217
BsrFI RCCGGY 2 cut(s) 296, 431
BsrI ACTGG 1 cut(s) 853
BssAI RCCGGY 2 cut(s) 296, 431
BssECI CCNNGG 3 cut(s) 234, 817, 1251
BssMI GATC 4 cut(s) 31, 425, 693, 1175
BssNI GRCGYC 1 cut(s) 451
BssT1I CCWWGG 2 cut(s) 234, 817
Bst4CI ACNGT 2 cut(s) 188, 1070
BstACI GRCGYC 1 cut(s) 451
BstC8I GCNNGC 4 cut(s) 302, 643, 824, 1093
BstDEI CTNAG 2 cut(s) 720, 1158
BstDSI CCRYGG 2 cut(s) 234, 1251
BstF5I GGATG 7 cut(s) 444, 585, 603, 920, 1006, 1177, 1201
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 4 cut(s) 34, 428, 696, 1178
BstMAI GTCTC 2 cut(s) 336, 869
BstMBI GATC 4 cut(s) 31, 425, 693, 1175
BstMCI CGRYCG 2 cut(s) 409, 436
BstMWI GCNNNNNNNGC 3 cut(s) 214, 318, 551
BstNSI RCATGY 2 cut(s) 975, 1095
BstSCI CCNGG 1 cut(s) 1150
BstSFI CTRYAG 3 cut(s) 184, 639, 780
BstV1I GCAGC 5 cut(s) 220, 223, 226, 925, 1204
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 1175
BstYI RGATCY 1 cut(s) 1175
BstZI CGGCCG 2 cut(s) 406, 433
Bsu15I ATCGAT 1 cut(s) 696
BsuI GTATCC 2 cut(s) 831, 898
BsuRI GGCC 5 cut(s) 300, 321, 408, 435, 853
BsuTUI ATCGAT 1 cut(s) 696
BtgI CCRYGG 2 cut(s) 234, 1251
BtgZI GCGATG 1 cut(s) 990
BtrI CACGTC 1 cut(s) 1140
BtsCI GGATG 7 cut(s) 444, 585, 603, 920, 1006, 1177, 1201
BtsIMutI CAGTG 3 cut(s) 193, 846, 1209
Cac8I GCNNGC 4 cut(s) 302, 643, 824, 1093
CciI TCATGA 1 cut(s) 151
CfoI GCGC 1 cut(s) 100
Cfr10I RCCGGY 2 cut(s) 296, 431
Cfr13I GGNCC 4 cut(s) 320, 525, 851, 1109
ClaI ATCGAT 1 cut(s) 696
CseI GACGC 2 cut(s) 459, 953
CviAII CATG 8 cut(s) 152, 235, 613, 691, 901, 972, 1092, 1129
DdeI CTNAG 2 cut(s) 720, 1158
DpnI GATC 4 cut(s) 33, 427, 695, 1177
DpnII GATC 4 cut(s) 31, 425, 693, 1175
DriI GACNNNNNGTC 1 cut(s) 517
EaeI YGGCCR 3 cut(s) 298, 406, 433
EagI CGGCCG 2 cut(s) 406, 433
Eam1105I GACNNNNNGTC 1 cut(s) 517
EciI GGCGGA 3 cut(s) 247, 378, 841
EclXI CGGCCG 2 cut(s) 406, 433
Eco130I CCWWGG 2 cut(s) 234, 817
Eco47I GGWCC 2 cut(s) 525, 1109
Eco52I CGGCCG 2 cut(s) 406, 433
Eco57I CTGAAG 2 cut(s) 189, 1233
EcoO109I RGGNCCY 2 cut(s) 320, 1109
EcoT14I CCWWGG 2 cut(s) 234, 817
ErhI CCWWGG 2 cut(s) 234, 817
FaeI CATG 8 cut(s) 155, 238, 616, 694, 904, 975, 1095, 1132
FaqI GGGAC 1 cut(s) 911
FatI CATG 8 cut(s) 151, 234, 612, 690, 900, 971, 1091, 1128
FauI CCCGC 1 cut(s) 815
FauNDI CATATG 1 cut(s) 910
Fnu4HI GCNGC 8 cut(s) 209, 212, 215, 409, 936, 939, 1144, 1218
FokI GGATG 7 cut(s) 451, 572, 590, 927, 1013, 1184, 1208
Fsp4HI GCNGC 8 cut(s) 209, 212, 215, 409, 936, 939, 1144, 1218
FspBI CTAG 2 cut(s) 509, 1077
GlaI GCGC 1 cut(s) 99
GluI GCNGC 8 cut(s) 209, 212, 215, 409, 936, 939, 1144, 1218
GsaI CCCAGC 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 101
HaeIII GGCC 5 cut(s) 300, 321, 408, 435, 853
HapII CCGG 5 cut(s) 297, 421, 432, 436, 1152
HgaI GACGC 2 cut(s) 459, 953
HhaI GCGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 451
Hin1II CATG 8 cut(s) 155, 238, 616, 694, 904, 975, 1095, 1132
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HinfI GANTC 4 cut(s) 344, 378, 512, 1201
HpaII CCGG 5 cut(s) 297, 421, 432, 436, 1152
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 2 cut(s) 534, 747
Hpy188I TCNGA 4 cut(s) 341, 355, 445, 678
Hpy188III TCNNGA 5 cut(s) 59, 152, 509, 790, 922
Hpy8I GTNNAC 2 cut(s) 534, 747
Hpy99I CGWCG 1 cut(s) 449
HpyAV CCTTC 4 cut(s) 111, 632, 662, 991
HpyCH4III ACNGT 2 cut(s) 188, 1070
HpyCH4IV ACGT 1 cut(s) 1139
HpyCH4V TGCA 6 cut(s) 124, 554, 616, 641, 941, 1220
HpyF10VI GCNNNNNNNGC 3 cut(s) 214, 318, 551
HpyF3I CTNAG 2 cut(s) 720, 1158
HpySE526I ACGT 1 cut(s) 1139
Hsp92I GRCGYC 1 cut(s) 451
Hsp92II CATG 8 cut(s) 155, 238, 616, 694, 904, 975, 1095, 1132
HspAI GCGC 1 cut(s) 98
Kzo9I GATC 4 cut(s) 31, 425, 693, 1175
LmnI GCTCC 1 cut(s) 505
Lsp1109I GCAGC 5 cut(s) 220, 223, 226, 925, 1204
LweI GCATC 3 cut(s) 594, 612, 905
MaeI CTAG 2 cut(s) 509, 1077
MaeII ACGT 1 cut(s) 1139
MaeIII GTNAC 2 cut(s) 190, 292
MalI GATC 4 cut(s) 33, 427, 695, 1177
MboI GATC 4 cut(s) 31, 425, 693, 1175
MboII GAAGA 6 cut(s) 29, 32, 35, 182, 322, 565
MflI RGATCY 1 cut(s) 1175
MluCI AATT 5 cut(s) 547, 774, 829, 992, 1272
MlyI GAGTC 3 cut(s) 338, 372, 506
MmeI TCCRAC 4 cut(s) 116, 372, 378, 468
MroXI GAANNNNTTC 1 cut(s) 672
MseI TTAA 3 cut(s) 108, 801, 1005
MslI CAYNNNNRTG 1 cut(s) 913
MspI CCGG 5 cut(s) 297, 421, 432, 436, 1152
MspR9I CCNGG 1 cut(s) 1152
MwoI GCNNNNNNNGC 3 cut(s) 214, 318, 551
NciI CCSGG 1 cut(s) 1152
NcoI CCATGG 1 cut(s) 234
NdeI CATATG 1 cut(s) 910
NdeII GATC 4 cut(s) 31, 425, 693, 1175
NlaIII CATG 8 cut(s) 155, 238, 616, 694, 904, 975, 1095, 1132
NlaIV GGNNCC 4 cut(s) 322, 501, 526, 1177
NmeAIII GCCGAG 1 cut(s) 360
NmuCI GTSAC 2 cut(s) 190, 292
NspI RCATGY 2 cut(s) 975, 1095
PaeI GCATGC 1 cut(s) 1095
PagI TCATGA 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 672
PfeI GAWTC 1 cut(s) 1201
PkrI GCNGC 8 cut(s) 210, 213, 216, 410, 937, 940, 1145, 1219
PleI GAGTC 3 cut(s) 338, 372, 506
PpsI GAGTC 3 cut(s) 338, 372, 506
PpuMI RGGWCCY 1 cut(s) 1109
Psp5II RGGWCCY 1 cut(s) 1109
PspFI CCCAGC 1 cut(s) 308
PspN4I GGNNCC 4 cut(s) 322, 501, 526, 1177
PspPI GGNCC 4 cut(s) 320, 525, 851, 1109
PspPPI RGGWCCY 1 cut(s) 1109
PstI CTGCAG 1 cut(s) 643
PsuI RGATCY 1 cut(s) 1175
RseI CAYNNNNRTG 1 cut(s) 913
SaqAI TTAA 3 cut(s) 108, 801, 1005
SatI GCNGC 8 cut(s) 209, 212, 215, 409, 936, 939, 1144, 1218
Sau3AI GATC 4 cut(s) 31, 425, 693, 1175
Sau96I GGNCC 4 cut(s) 320, 525, 851, 1109
SchI GAGTC 3 cut(s) 338, 372, 506
ScrFI CCNGG 1 cut(s) 1152
SfaNI GCATC 3 cut(s) 594, 612, 905
SfcI CTRYAG 3 cut(s) 184, 639, 780
SinI GGWCC 2 cut(s) 525, 1109
SmiMI CAYNNNNRTG 1 cut(s) 913
SpeI ACTAGT 1 cut(s) 1076
SphI GCATGC 1 cut(s) 1095
Sse9I AATT 5 cut(s) 547, 774, 829, 992, 1272
SsiI CCGC 8 cut(s) 258, 363, 409, 822, 826, 935, 1143, 1268
SspMI CTAG 2 cut(s) 509, 1077
StyD4I CCNGG 1 cut(s) 1150
StyI CCWWGG 2 cut(s) 234, 817
TaaI ACNGT 2 cut(s) 188, 1070
TaiI ACGT 1 cut(s) 1142
TaqI TCGA 3 cut(s) 462, 696, 923
TasI AATT 5 cut(s) 547, 774, 829, 992, 1272
TauI GCSGC 3 cut(s) 411, 938, 1146
TfiI GAWTC 1 cut(s) 1201
Tru1I TTAA 3 cut(s) 108, 801, 1005
Tru9I TTAA 3 cut(s) 108, 801, 1005
TscAI CASTG 3 cut(s) 193, 853, 1216
TseFI GTSAC 2 cut(s) 190, 292
TseI GCWGC 5 cut(s) 208, 211, 214, 938, 1217
Tsp45I GTSAC 2 cut(s) 190, 292
TspDTI ATGAA 7 cut(s) 17, 140, 168, 192, 614, 681, 870
TspGWI ACGGA 4 cut(s) 280, 462, 1119, 1268
TspRI CASTG 3 cut(s) 193, 853, 1216
VpaK11BI GGWCC 2 cut(s) 525, 1109
XapI RAATTY 2 cut(s) 547, 829
XbaI TCTAGA 1 cut(s) 508
XceI RCATGY 2 cut(s) 975, 1095
XmnI GAANNNNTTC 1 cut(s) 672
XspI CTAG 2 cut(s) 509, 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.