pycom11g08180

Lignin degradation and detoxification of lignin-derived products

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
6270883 .. 6273724
2842 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g08180.6

Sequence Viewer

Length: 1767 bp
ATGGGGTCTGCGATTCCTTTGTCAGCAACATTTCTAGTGGCTTTTCTTCTTGCTCTTATCTCTCTCTGTGCCTCTCCTGAGTTTGCCATTGCTGCAGCTGGCGGTGTTACAAGGCAATACAAATTTGATATAGAGTTGAAAAATGTGACTAGGCTGTGCACCACAAAGAGCATTGTGACAGTGAATGGCAAGTTTCCTGGACCCCGAATTATTGCCAGAGAAGGAGACAGGGTTTTGGTTAAAGTGGTCAATCATGTTCCAAACAACATTACCCTCCATTGGCATGGCATCCGACAATTGCAGAGTGGATGGGCAGATGGGCCATCATATGTCACTCAGTGCCCTATTCAAACAAACCAGAGTTATGTGTACAACTTCACCATCATTGGCCAAAGGGGAACTCTCTTCTGGCATGCTCACATCTCATGGCTAAGAGCTACTGTCTATGGACCCCTCATCATCCTCCCTAAGCGCCATGCTCCCTACCCTTTTCCCAAACCCCACAAAGAAGTTCCCGTCATTTTCGGTGAGTGGTGGAATGTTGATCCGGAGACTGTAATTAGTCAGGCTCTACATACCGGAAATGGTCCTAATGTCTCCGATGCTTATACGATTAACGGACTTCCAGGGCCATTGTACAATTGTTCCAAAAAGGACACTTTCAGGCTAAAGGTGAAGCCAGGAAAGACATACCTCTTGCGTTTGATCAACGCCGCACTCAATGATGAACTGTTTTTCAGCATAGCAAACCACAGTATAACAGTAGTTGAAGCAGATGCTGTGTATGTCAAACCCTTCAAGACCAATATCTTACTCATCACACCAGGGCAAACCACAAACGTGCTTCTCAAGGCAAAACCTCACTACCCTAATGCCACTTTCCTAATGTTAGCTAGACCCTACTTTACAGGCAGGGGTACTTTTGACAATTCAACTGTTGCTGGAATTCTTGAGTACAAAAAACCCTCAAATTCTTCATCCTCCACATCACTGAAAAGCCATCCACTTTTTAGGCCAATCCTTCCCCAAATCAATGCTACTTCATTTGTTGCAAATTTTACCAGTAAACTCAGGAGTTTGGCCAATTCTAGATTTCCAGCCAATGTGCCCAAAACTGTTGAAAGACGCTTCTTTTTCACTGTAGGGCTTGGAACCAACCCATGCCCTAAAAACCAAACATGCCAAGGGCCTACTAACACCACCAAATTTGCAGCTTCTATGAACAACATCTCATTTGCTCTTCCTTCAGTAGCAATGCTTCAATCTCATTTCTTTGCTCAATCCAACAGTGTTTACTCCACCGATTTCCCTATTATTCCTCCCAAACCGTTCAATTATACAGGCACTCCACCTAACAACACCAATGTTAATAATGGGACAAAGGTGGTGGTGTTAAAGTTCAATACTAGTGTGGAATTGGTGATGCAGGGCACTAGCATTTTGGGTGCTGAGAACCACCCTCTTCACCTTCATGGCTTCAACTTCTTTGTTGTTGGACAAGGTTTTGGAAACTTTGACCCTAACAAAGACCCGTCCAACTTCAACCTTGTTTTCCAGATCGATCCTGTTGAAAGGAACTCCGTTGGAGTACCCTCCGGGGGTTGGGTGGCTATCCGATTTCTTGCAGACAACCCAGGCGTTTGGCTCATGCACTGCCACTTTGATGTCCACTTGAGCTGGGGTCTGAGGATGGCTTGGGTAGTCCAGGATGGGAAGCTCCCTAATCAGAAGCTGCCTCCTCCACCGTCCGATCTTCCCAAGTGTTGA
Functional Annotation

Protein Analysis

589

Amino Acids

64.92

Weight (kDa)

9.66

Isoelectric Point (pI)

31.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 547
AciI CCGC 2 cut(s) 102, 714
AclWI GGATC 2 cut(s) 539, 1556
AcoI YGGCCR 2 cut(s) 388, 1080
AcsI RAATTY 5 cut(s) 122, 945, 970, 1054, 1205
AcuI CTGAAG 1 cut(s) 1230
AdeI CACNNNGTG 1 cut(s) 339
AfaI GTAC 5 cut(s) 371, 638, 919, 956, 1590
AfiI CCNNNNNNNGG 3 cut(s) 279, 1598, 1602
AhlI ACTAGT 1 cut(s) 1406
AjnI CCWGG 6 cut(s) 196, 625, 679, 823, 1633, 1704
AleI CACNNNNGTG 1 cut(s) 839
AluBI AGCT 7 cut(s) 98, 437, 893, 1214, 1677, 1717, 1732
AluI AGCT 7 cut(s) 98, 437, 893, 1214, 1677, 1717, 1732
Alw21I GWGCWC 1 cut(s) 161
Alw26I GTCTC 3 cut(s) 219, 545, 601
Alw44I GTGCAC 1 cut(s) 157
AlwI GGATC 2 cut(s) 539, 1556
AlwNI CAGNNNCTG 2 cut(s) 779, 1732
Aor13HI TCCGGA 1 cut(s) 547
AoxI GGCC 6 cut(s) 320, 388, 629, 1013, 1080, 1187
ApaLI GTGCAC 1 cut(s) 157
ApeKI GCWGC 4 cut(s) 92, 95, 1211, 1732
ApoI RAATTY 5 cut(s) 122, 945, 970, 1054, 1205
AspLEI GCGC 1 cut(s) 474
AspS9I GGNCC 6 cut(s) 200, 320, 449, 587, 629, 1187
AsuC2I CCSGG 1 cut(s) 1597
AsuHPI GGTGA 5 cut(s) 370, 539, 685, 1432, 1457
AvaII GGWCC 3 cut(s) 200, 449, 587
BaeGI GKGCMC 4 cut(s) 161, 344, 1110, 1433
BalI TGGCCA 2 cut(s) 390, 1082
BarI GAAGNNNNNNTAC 2 cut(s) 1242, 1274
Bbv12I GWGCWC 1 cut(s) 161
BbvI GCAGC 4 cut(s) 79, 107, 1223, 1719
BccI CCATC 7 cut(s) 303, 311, 331, 389, 1008, 1684, 1703
BciT130I CCWGG 6 cut(s) 198, 627, 681, 825, 1635, 1706
BclI TGATCA 1 cut(s) 705
BcnI CCSGG 1 cut(s) 1597
BcoDI GTCTC 3 cut(s) 219, 545, 601
BcuI ACTAGT 1 cut(s) 1406
BfaI CTAG 6 cut(s) 35, 150, 894, 1089, 1407, 1434
BfmI CTRYAG 2 cut(s) 93, 1140
BfoI RGCGCY 1 cut(s) 475
BisI GCNGC 5 cut(s) 93, 96, 714, 1212, 1733
BlsI GCNGC 5 cut(s) 94, 97, 715, 1213, 1734
Bme1390I CCNGG 7 cut(s) 198, 627, 681, 825, 1597, 1635, 1706
Bme18I GGWCC 3 cut(s) 200, 449, 587
BmgT120I GGNCC 6 cut(s) 200, 320, 449, 587, 629, 1187
BmiI GGNNCC 3 cut(s) 202, 451, 1153
BmrFI CCNGG 7 cut(s) 198, 627, 681, 825, 1597, 1635, 1706
BmsI GCATC 4 cut(s) 297, 592, 766, 1413
Bpu10I CCTNAGC 1 cut(s) 468
BpuEI CTTGAG 3 cut(s) 833, 971, 1693
BpuMI CCSGG 1 cut(s) 1597
Bsa29I ATCGAT 1 cut(s) 1560
BsaJI CCNNGG 5 cut(s) 626, 824, 1183, 1596, 1633
BsaWI WCCGGW 2 cut(s) 547, 578
BsaXI ACNNNNNCTCC 4 cut(s) 216, 246, 1330, 1360
Bsc4I CCNNNNNNNGG 3 cut(s) 279, 1598, 1602
Bse1I ACTGG 1 cut(s) 1062
Bse3DI GCAATG 2 cut(s) 87, 1260
BseAI TCCGGA 1 cut(s) 547
BseBI CCWGG 6 cut(s) 198, 627, 681, 825, 1635, 1706
BseCI ATCGAT 1 cut(s) 1560
BseDI CCNNGG 5 cut(s) 626, 824, 1183, 1596, 1633
BseGI GGATG 7 cut(s) 288, 314, 459, 977, 1000, 1695, 1714
BseLI CCNNNNNNNGG 3 cut(s) 279, 1598, 1602
BseMI GCAATG 2 cut(s) 87, 1260
BseMII CTCAG 5 cut(s) 69, 350, 1084, 1440, 1676
BseNI ACTGG 1 cut(s) 1062
BseRI GAGGAG 1 cut(s) 1728
BseSI GKGCMC 4 cut(s) 161, 344, 1110, 1433
BseXI GCAGC 4 cut(s) 79, 107, 1223, 1719
BseYI CCCAGC 1 cut(s) 1677
BshFI GGCC 6 cut(s) 322, 390, 631, 1015, 1082, 1189
BshVI ATCGAT 1 cut(s) 1560
BsiHKAI GWGCWC 1 cut(s) 161
BsiSI CCGG 3 cut(s) 548, 579, 1596
BslFI GGGAC 1 cut(s) 1390
BslI CCNNNNNNNGG 3 cut(s) 279, 1598, 1602
BsmAI GTCTC 3 cut(s) 219, 545, 601
BsmFI GGGAC 1 cut(s) 1390
BsnI GGCC 6 cut(s) 322, 390, 631, 1015, 1082, 1189
Bsp1286I GDGCHC 4 cut(s) 161, 344, 1110, 1433
Bsp13I TCCGGA 1 cut(s) 547
Bsp1407I TGTACA 2 cut(s) 369, 636
Bsp143I GATC 5 cut(s) 544, 705, 1557, 1561, 1750
BspACI CCGC 2 cut(s) 102, 714
BspANI GGCC 6 cut(s) 322, 390, 631, 1015, 1082, 1189
BspCNI CTCAG 5 cut(s) 70, 349, 1083, 1441, 1677
BspDI ATCGAT 1 cut(s) 1560
BspEI TCCGGA 1 cut(s) 547
BspLI GGNNCC 3 cut(s) 202, 451, 1153
BspMAI CTGCAG 1 cut(s) 97
BspPI GGATC 2 cut(s) 539, 1556
BspQI GCTCTTC 1 cut(s) 1245
BsrDI GCAATG 2 cut(s) 87, 1260
BsrGI TGTACA 2 cut(s) 369, 636
BsrI ACTGG 1 cut(s) 1062
BssECI CCNNGG 5 cut(s) 626, 824, 1183, 1596, 1633
BssMI GATC 5 cut(s) 544, 705, 1557, 1561, 1750
BssT1I CCWWGG 1 cut(s) 1183
Bst2UI CCWGG 6 cut(s) 198, 627, 681, 825, 1635, 1706
Bst6I CTCTTC 3 cut(s) 410, 1245, 1467
BstAUI TGTACA 2 cut(s) 369, 636
BstC8I GCNNGC 2 cut(s) 100, 414
BstDEI CTNAG 7 cut(s) 78, 336, 431, 468, 1070, 1449, 1685
BstF5I GGATG 7 cut(s) 288, 314, 459, 977, 1000, 1695, 1714
BstH2I RGCGCY 1 cut(s) 475
BstHHI GCGC 1 cut(s) 474
BstKTI GATC 5 cut(s) 547, 708, 1560, 1564, 1753
BstMAI GTCTC 3 cut(s) 219, 545, 601
BstMBI GATC 5 cut(s) 544, 705, 1557, 1561, 1750
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 6 cut(s) 198, 627, 681, 825, 1635, 1706
BstNSI RCATGY 2 cut(s) 416, 1182
BstSCI CCNGG 7 cut(s) 196, 625, 679, 823, 1595, 1633, 1704
BstSFI CTRYAG 2 cut(s) 93, 1140
BstSLI GKGCMC 4 cut(s) 161, 344, 1110, 1433
BstV1I GCAGC 4 cut(s) 79, 107, 1223, 1719
BstXI CCANNNNNNTGG 2 cut(s) 284, 1641
Bsu15I ATCGAT 1 cut(s) 1560
BsuRI GGCC 6 cut(s) 322, 390, 631, 1015, 1082, 1189
BsuTUI ATCGAT 1 cut(s) 1560
BtsCI GGATG 7 cut(s) 288, 314, 459, 977, 1000, 1695, 1714
BtsI GCAGTG 1 cut(s) 1651
BtsIMutI CAGTG 6 cut(s) 186, 344, 989, 1137, 1294, 1651
Cac8I GCNNGC 2 cut(s) 100, 414
CaiI CAGNNNCTG 2 cut(s) 779, 1732
CfoI GCGC 1 cut(s) 474
Cfr13I GGNCC 6 cut(s) 200, 320, 449, 587, 629, 1187
ClaI ATCGAT 1 cut(s) 1560
CseI GACGC 1 cut(s) 1134
Csp6I GTAC 5 cut(s) 370, 637, 918, 955, 1589
CspCI CAANNNNNGTGG 4 cut(s) 1189, 1224, 1368, 1403
CviAII CATG 9 cut(s) 254, 284, 413, 426, 476, 1161, 1179, 1472, 1648
CviQI GTAC 5 cut(s) 370, 637, 918, 955, 1589
DdeI CTNAG 7 cut(s) 78, 336, 431, 468, 1070, 1449, 1685
DpnI GATC 5 cut(s) 546, 707, 1559, 1563, 1752
DpnII GATC 5 cut(s) 544, 705, 1557, 1561, 1750
DraIII CACNNNGTG 1 cut(s) 339
EaeI YGGCCR 2 cut(s) 388, 1080
Eam1104I CTCTTC 3 cut(s) 410, 1245, 1467
EarI CTCTTC 3 cut(s) 410, 1245, 1467
Eco130I CCWWGG 1 cut(s) 1183
Eco47I GGWCC 3 cut(s) 200, 449, 587
Eco57I CTGAAG 1 cut(s) 1230
EcoO109I RGGNCCY 1 cut(s) 1187
EcoRI GAATTC 1 cut(s) 945
EcoRII CCWGG 6 cut(s) 196, 625, 679, 823, 1633, 1704
EcoT14I CCWWGG 1 cut(s) 1183
ErhI CCWWGG 1 cut(s) 1183
FaeI CATG 9 cut(s) 257, 287, 416, 429, 479, 1164, 1182, 1475, 1651
FaqI GGGAC 1 cut(s) 1390
FatI CATG 9 cut(s) 253, 283, 412, 425, 475, 1160, 1178, 1471, 1647
FauNDI CATATG 1 cut(s) 328
FbaI TGATCA 1 cut(s) 705
Fnu4HI GCNGC 5 cut(s) 93, 96, 714, 1212, 1733
FokI GGATG 7 cut(s) 275, 321, 446, 964, 987, 1702, 1721
Fsp4HI GCNGC 5 cut(s) 93, 96, 714, 1212, 1733
FspBI CTAG 6 cut(s) 35, 150, 894, 1089, 1407, 1434
GlaI GCGC 1 cut(s) 473
GluI GCNGC 5 cut(s) 93, 96, 714, 1212, 1733
GsaI CCCAGC 1 cut(s) 1681
HaeII RGCGCY 1 cut(s) 475
HaeIII GGCC 6 cut(s) 322, 390, 631, 1015, 1082, 1189
HapII CCGG 3 cut(s) 548, 579, 1596
HgaI GACGC 1 cut(s) 1134
HhaI GCGC 1 cut(s) 474
Hin1II CATG 9 cut(s) 257, 287, 416, 429, 479, 1164, 1182, 1475, 1651
Hin6I GCGC 1 cut(s) 472
HinP1I GCGC 1 cut(s) 472
HinfI GANTC 1 cut(s) 13
HpaII CCGG 3 cut(s) 548, 579, 1596
HphI GGTGA 5 cut(s) 370, 539, 685, 1432, 1457
Hpy166II GTNNAC 5 cut(s) 159, 370, 1067, 1294, 1669
Hpy188I TCNGA 6 cut(s) 293, 601, 1616, 1686, 1728, 1750
Hpy188III TCNNGA 7 cut(s) 77, 548, 799, 950, 1072, 1089, 1555
Hpy8I GTNNAC 5 cut(s) 159, 370, 1067, 1294, 1669
HpyAV CCTTC 5 cut(s) 215, 805, 1031, 1254, 1478
HpyCH4IV ACGT 1 cut(s) 840
HpyCH4V TGCA 8 cut(s) 95, 159, 301, 1052, 1211, 1426, 1625, 1651
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 7 cut(s) 78, 336, 431, 468, 1070, 1449, 1685
HpySE526I ACGT 1 cut(s) 840
Hsp92II CATG 9 cut(s) 257, 287, 416, 429, 479, 1164, 1182, 1475, 1651
HspAI GCGC 1 cut(s) 472
Kpn2I TCCGGA 1 cut(s) 547
Ksp22I TGATCA 1 cut(s) 705
Kzo9I GATC 5 cut(s) 544, 705, 1557, 1561, 1750
LguI GCTCTTC 1 cut(s) 1245
LmnI GCTCC 2 cut(s) 484, 1722
Lsp1109I GCAGC 4 cut(s) 79, 107, 1223, 1719
LweI GCATC 4 cut(s) 297, 592, 766, 1413
MaeI CTAG 6 cut(s) 35, 150, 894, 1089, 1407, 1434
MaeII ACGT 1 cut(s) 840
MaeIII GTNAC 4 cut(s) 106, 145, 175, 331
MalI GATC 5 cut(s) 546, 707, 1559, 1563, 1752
MboI GATC 5 cut(s) 544, 705, 1557, 1561, 1750
MboII GAAGA 6 cut(s) 38, 397, 966, 1232, 1454, 1745
MfeI CAATTG 2 cut(s) 296, 640
MhlI GDGCHC 4 cut(s) 161, 344, 1110, 1433
MlsI TGGCCA 2 cut(s) 390, 1082
MluNI TGGCCA 2 cut(s) 390, 1082
MmeI TCCRAC 5 cut(s) 316, 1308, 1474, 1560, 1564
Mox20I TGGCCA 2 cut(s) 390, 1082
MroI TCCGGA 1 cut(s) 547
MscI TGGCCA 2 cut(s) 390, 1082
MseI TTAA 4 cut(s) 240, 615, 1368, 1394
MslI CAYNNNNRTG 4 cut(s) 282, 839, 1470, 1662
Msp20I TGGCCA 2 cut(s) 390, 1082
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 3 cut(s) 548, 579, 1596
MspR9I CCNGG 7 cut(s) 198, 627, 681, 825, 1597, 1635, 1706
MunI CAATTG 2 cut(s) 296, 640
MvaI CCWGG 6 cut(s) 198, 627, 681, 825, 1635, 1706
MwoI GCNNNNNNNGC 1 cut(s) 92
NciI CCSGG 1 cut(s) 1597
NdeI CATATG 1 cut(s) 328
NdeII GATC 5 cut(s) 544, 705, 1557, 1561, 1750
NlaIII CATG 9 cut(s) 257, 287, 416, 429, 479, 1164, 1182, 1475, 1651
NlaIV GGNNCC 3 cut(s) 202, 451, 1153
NmuCI GTSAC 3 cut(s) 145, 175, 331
NspI RCATGY 2 cut(s) 416, 1182
OliI CACNNNNGTG 1 cut(s) 839
PaeI GCATGC 1 cut(s) 416
PciSI GCTCTTC 1 cut(s) 1245
PfeI GAWTC 1 cut(s) 13
PfoI TCCNGGA 2 cut(s) 196, 1704
PkrI GCNGC 5 cut(s) 94, 97, 715, 1213, 1734
Psp6I CCWGG 6 cut(s) 196, 625, 679, 823, 1633, 1704
PspFI CCCAGC 1 cut(s) 1677
PspGI CCWGG 6 cut(s) 196, 625, 679, 823, 1633, 1704
PspN4I GGNNCC 3 cut(s) 202, 451, 1153
PspPI GGNCC 6 cut(s) 200, 320, 449, 587, 629, 1187
PstI CTGCAG 1 cut(s) 97
PstNI CAGNNNCTG 2 cut(s) 779, 1732
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 5 cut(s) 371, 638, 919, 956, 1590
RsaNI GTAC 5 cut(s) 370, 637, 918, 955, 1589
RseI CAYNNNNRTG 4 cut(s) 282, 839, 1470, 1662
SapI GCTCTTC 1 cut(s) 1245
SaqAI TTAA 4 cut(s) 240, 615, 1368, 1394
SatI GCNGC 5 cut(s) 93, 96, 714, 1212, 1733
Sau3AI GATC 5 cut(s) 544, 705, 1557, 1561, 1750
Sau96I GGNCC 6 cut(s) 200, 320, 449, 587, 629, 1187
ScrFI CCNGG 7 cut(s) 198, 627, 681, 825, 1597, 1635, 1706
SduI GDGCHC 4 cut(s) 161, 344, 1110, 1433
SfaNI GCATC 4 cut(s) 297, 592, 766, 1413
SfcI CTRYAG 2 cut(s) 93, 1140
SinI GGWCC 3 cut(s) 200, 449, 587
SmiMI CAYNNNNRTG 4 cut(s) 282, 839, 1470, 1662
SmlI CTYRAG 3 cut(s) 848, 950, 1672
SmoI CTYRAG 3 cut(s) 848, 950, 1672
SpeI ACTAGT 1 cut(s) 1406
SphI GCATGC 1 cut(s) 416
SsiI CCGC 2 cut(s) 102, 714
SspMI CTAG 6 cut(s) 35, 150, 894, 1089, 1407, 1434
StyD4I CCNGG 7 cut(s) 196, 625, 679, 823, 1595, 1633, 1704
StyI CCWWGG 1 cut(s) 1183
TaiI ACGT 1 cut(s) 843
TaqI TCGA 1 cut(s) 1560
TatI WGTACW 3 cut(s) 369, 636, 954
TauI GCSGC 1 cut(s) 716
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 4 cut(s) 240, 615, 1368, 1394
Tru9I TTAA 4 cut(s) 240, 615, 1368, 1394
TscAI CASTG 6 cut(s) 186, 344, 996, 1144, 1294, 1658
TseFI GTSAC 3 cut(s) 145, 175, 331
TseI GCWGC 4 cut(s) 92, 95, 1211, 1732
Tsp45I GTSAC 3 cut(s) 145, 175, 331
TspDTI ATGAA 5 cut(s) 741, 966, 1032, 1235, 1460
TspGWI ACGGA 2 cut(s) 633, 1570
TspRI CASTG 6 cut(s) 186, 344, 996, 1144, 1294, 1658
VneI GTGCAC 1 cut(s) 157
VpaK11BI GGWCC 3 cut(s) 200, 449, 587
XapI RAATTY 5 cut(s) 122, 945, 970, 1054, 1205
XbaI TCTAGA 1 cut(s) 1088
XceI RCATGY 2 cut(s) 416, 1182
XspI CTAG 6 cut(s) 35, 150, 894, 1089, 1407, 1434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.