Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003480.1

Orthogroup ID

OG0003501

Physical Location & Seq

Genomic Coordinates Forward (+)

78542 .. 80158

Gene Structure 1617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003480.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

atgggttatcttcgttttccgtcaatggcggcattgctctttttcttttgtgttgcagtagctctaatgccagagtttgctgaaggcagaacaagacactacactttcaatattaagtaccacaatgtcacaaggttgtgcagcacaaggaggatcataagtgtgaatggaaaattcccaggaccaagactagtggcaagggaaggtgatcaagttctcattaaagtggtgaaccggatcaaagagaatgttaccattcactggcatggaattaggcaacttagaagtggttgggcagatggtccggcttacattacacagtgtcctatccaatctggccagtcatacatttacaacttcaccatcacaggccagagaggaactctgttgtatcatgctcacatttcatggttgagagccaccctttatggacccatcatcattctcccaagaagaaatgagtcttacccttttgtgaaaccctacaagcaaatccccattattcttggagagtggtttaaagcagaccctgaggctgtgattagccaggctcttcagactggagcaggacctaatgtttcggatgcgtacactctgaatgggcttccaggccccacgtacaactgttcatctaatgatgtattcaagctaaaggtgaaacctgggaagacatacctcctccgattgatcaacgctgcactcaacgacgagctattcatcagtatagccaatcattccctaaccgtggtggatgtcgatgcttcttatgtcaaacctttcaacactgacatacttctcatcgcccctggccaaaccacaaacgtcctcctcacaacgaagcccaatttccccaatgccactttcctcatcctcacgagcccctacttcaccggtgctggcaccctcgacaacaccaccgctgctggaatccttgaatatgagaacccactaagtagtactagtactccctctcccatcaaaacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016722 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

328

Amino Acids

36.43

Weight (kDa)

9.41

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29130
fragaria_vesca	FvH4_6g13430
malus_domestica	MD03G1087400.v1.1 MD04G1131200.v1.1 MD11G1096500.v1.1 MD12G1144300.v1.1
prunus_persica	Prupe.6G072100_v2.0.a1 Prupe.6G257700_v2.0.a1
pyrus_communis	pycom03g06930 pycom04g11940 pycom11g08180 pycom12g13880
rosa_chinensis	RchiOBHm_Chr3g0466301 RchiOBHm_Chr3g0466311 RchiOBHm_Chr5g0065931
rosa_laevigata	RLG00000024588 RLG00000035828
rosa_multiflora	Rmu_co8069514.1_g000001 Rmu_co8514891.1_g000001 Rmu_sc0000350.1_g000021 Rmu_sc0003480.1_g000018 Rmu_sc0005869.1_g000003
rosa_roxburghii	Rroxscaffold_1G00015240 Rroxscaffold_6G00414620
rosa_rugosa	Rorug03G0080800 Rorug05G0375600
rosa_samantha	Rh3AG127200 Rh3BG148500 Rh3DG149200 Rh5AG433600 Rh5BG450200 Rh5CG472500 Rh5DG463600
rosa_wichuraiana	Rw3G012010 Rw5G040650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	899
AccB7I	CCANNNNNTGG	1 cut(s)	261
AciI	CCGC	2 cut(s)	29, 918
AclWI	GGATC	2 cut(s)	161, 245
AcoI	YGGCCR	2 cut(s)	337, 808
AcsI	RAATTY	1 cut(s)	173
AcuI	CTGAAG	2 cut(s)	102, 539
AfaI	GTAC	5 cut(s)	119, 590, 620, 958, 964
AfiI	CCNNNNNNNGG	2 cut(s)	261, 745
AgeI	ACCGGT	1 cut(s)	890
AgsI	TTSAA	4 cut(s)	109, 646, 781, 935
AhlI	ACTAGT	2 cut(s)	190, 959
AjnI	CCWGG	5 cut(s)	178, 546, 607, 661, 805
AjuI	GAANNNNNNNTTGG	2 cut(s)	845, 877
AluBI	AGCT	3 cut(s)	62, 649, 712
AluI	AGCT	3 cut(s)	62, 649, 712
AlwI	GGATC	2 cut(s)	161, 245
AlwNI	CAGNNNCTG	1 cut(s)	530
AoxI	GGCC	4 cut(s)	337, 370, 610, 808
ApeKI	GCWGC	3 cut(s)	141, 695, 920
ApoI	RAATTY	1 cut(s)	173
AsiGI	ACCGGT	1 cut(s)	890
AspS9I	GGNCC	5 cut(s)	182, 302, 431, 569, 611
AsuHPI	GGTGA	5 cut(s)	218, 241, 352, 667, 880
AvaII	GGWCC	4 cut(s)	182, 302, 431, 569
AxyI	CCTNAGG	1 cut(s)	531
BalI	TGGCCA	2 cut(s)	339, 810
BanI	GGYRCC	1 cut(s)	899
BanII	GRGCYC	1 cut(s)	881
BauI	CACGAG	1 cut(s)	874
BbsI	GAAGAC	1 cut(s)	674
BbvI	GCAGC	3 cut(s)	153, 682, 907
BccI	CCATC	4 cut(s)	293, 371, 443, 983
BciT130I	CCWGG	5 cut(s)	180, 548, 609, 663, 807
BclI	TGATCA	2 cut(s)	208, 687
BcuI	ACTAGT	2 cut(s)	190, 959
BfaI	CTAG	2 cut(s)	191, 960
BisI	GCNGC	4 cut(s)	30, 142, 696, 921
BlsI	GCNGC	4 cut(s)	31, 143, 697, 922
BmcAI	AGTACT	2 cut(s)	958, 964
Bme1390I	CCNGG	5 cut(s)	180, 548, 609, 663, 807
Bme18I	GGWCC	4 cut(s)	182, 302, 431, 569
BmgT120I	GGNCC	5 cut(s)	182, 302, 431, 569, 611
BmiI	GGNNCC	3 cut(s)	433, 613, 901
BmrFI	CCNGG	5 cut(s)	180, 548, 609, 663, 807
BmsI	GCATC	2 cut(s)	574, 748
BpiI	GAAGAC	1 cut(s)	674
BplI	GAGNNNNNCTC	2 cut(s)	367, 399
BpmI	CTGGAG	1 cut(s)	582
BsaAI	YACGTR	1 cut(s)	618
BsaJI	CCNNGG	4 cut(s)	178, 662, 744, 805
BsaWI	WCCGGW	2 cut(s)	234, 890
BsaXI	ACNNNNNCTCC	4 cut(s)	949, 955, 979, 985
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 745
Bse118I	RCCGGY	1 cut(s)	890
Bse1I	ACTGG	3 cut(s)	266, 340, 565
Bse21I	CCTNAGG	1 cut(s)	531
Bse3DI	GCAATG	1 cut(s)	32
BseBI	CCWGG	5 cut(s)	180, 548, 609, 663, 807
BseDI	CCNNGG	4 cut(s)	178, 662, 744, 805
BseGI	GGATG	3 cut(s)	589, 757, 867
BseLI	CCNNNNNNNGG	2 cut(s)	261, 745
BseMI	GCAATG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	3 cut(s)	266, 340, 565
BseRI	GAGGAG	2 cut(s)	668, 818
BseXI	GCAGC	3 cut(s)	153, 682, 907
BsgI	GTGCAG	2 cut(s)	160, 681
BshFI	GGCC	4 cut(s)	339, 372, 612, 810
BshNI	GGYRCC	1 cut(s)	899
BshTI	ACCGGT	1 cut(s)	890
BsiSI	CCGG	3 cut(s)	235, 305, 891
BslI	CCNNNNNNNGG	2 cut(s)	261, 745
BsnI	GGCC	4 cut(s)	339, 372, 612, 810
Bsp1286I	GDGCHC	1 cut(s)	881
Bsp143I	GATC	4 cut(s)	153, 208, 237, 687
BspACI	CCGC	2 cut(s)	29, 918
BspANI	GGCC	4 cut(s)	339, 372, 612, 810
BspCNI	CTCAG	1 cut(s)	523
BspLI	GGNNCC	3 cut(s)	433, 613, 901
BspPI	GGATC	2 cut(s)	161, 245
BspQI	GCTCTTC	1 cut(s)	558
BspT107I	GGYRCC	1 cut(s)	899
BsrDI	GCAATG	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	890
BsrI	ACTGG	3 cut(s)	266, 340, 565
BssAI	RCCGGY	1 cut(s)	890
BssECI	CCNNGG	4 cut(s)	178, 662, 744, 805
BssMI	GATC	4 cut(s)	153, 208, 237, 687
BssSI	CACGAG	1 cut(s)	874
Bst2BI	CACGAG	1 cut(s)	874
Bst2UI	CCWGG	5 cut(s)	180, 548, 609, 663, 807
Bst4CI	ACNGT	3 cut(s)	321, 626, 745
Bst6I	CTCTTC	1 cut(s)	558
BstBAI	YACGTR	1 cut(s)	618
BstC8I	GCNNGC	1 cut(s)	898
BstDEI	CTNAG	4 cut(s)	281, 531, 950, 984
BstDSI	CCRYGG	1 cut(s)	744
BstF5I	GGATG	3 cut(s)	589, 757, 867
BstKTI	GATC	4 cut(s)	156, 211, 240, 690
BstMBI	GATC	4 cut(s)	153, 208, 237, 687
BstNI	CCWGG	5 cut(s)	180, 548, 609, 663, 807
BstSCI	CCNGG	5 cut(s)	178, 546, 607, 661, 805
BstV1I	GCAGC	3 cut(s)	153, 682, 907
BstV2I	GAAGAC	1 cut(s)	674
Bsu36I	CCTNAGG	1 cut(s)	531
BsuRI	GGCC	4 cut(s)	339, 372, 612, 810
BtgI	CCRYGG	1 cut(s)	744
BtgZI	GCGATG	1 cut(s)	784
BtsCI	GGATG	3 cut(s)	589, 757, 867
BtsIMutI	CAGTG	3 cut(s)	259, 326, 783
Cac8I	GCNNGC	1 cut(s)	898
CaiI	CAGNNNCTG	1 cut(s)	530
Cfr10I	RCCGGY	1 cut(s)	890
Cfr13I	GGNCC	5 cut(s)	182, 302, 431, 569, 611
Csp6I	GTAC	5 cut(s)	118, 589, 619, 957, 963
CspAI	ACCGGT	1 cut(s)	890
CspCI	CAANNNNNGTGG	2 cut(s)	174, 209
CviAII	CATG	3 cut(s)	266, 395, 408
CviQI	GTAC	5 cut(s)	118, 589, 619, 957, 963
DdeI	CTNAG	4 cut(s)	281, 531, 950, 984
DpnI	GATC	4 cut(s)	155, 210, 239, 689
DpnII	GATC	4 cut(s)	153, 208, 237, 687
DraI	TTTAAA	1 cut(s)	520
EaeI	YGGCCR	2 cut(s)	337, 808
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Eco24I	GRGCYC	1 cut(s)	881
Eco47I	GGWCC	4 cut(s)	182, 302, 431, 569
Eco57I	CTGAAG	2 cut(s)	102, 539
Eco81I	CCTNAGG	1 cut(s)	531
EcoO109I	RGGNCCY	2 cut(s)	569, 611
EcoRII	CCWGG	5 cut(s)	178, 546, 607, 661, 805
EcoT38I	GRGCYC	1 cut(s)	881
FaeI	CATG	3 cut(s)	269, 398, 411
FatI	CATG	3 cut(s)	265, 394, 407
FbaI	TGATCA	2 cut(s)	208, 687
Fnu4HI	GCNGC	4 cut(s)	30, 142, 696, 921
FokI	GGATG	3 cut(s)	596, 764, 854
FriOI	GRGCYC	1 cut(s)	881
Fsp4HI	GCNGC	4 cut(s)	30, 142, 696, 921
FspBI	CTAG	2 cut(s)	191, 960
GluI	GCNGC	4 cut(s)	30, 142, 696, 921
GsuI	CTGGAG	1 cut(s)	582
HaeIII	GGCC	4 cut(s)	339, 372, 612, 810
HapII	CCGG	3 cut(s)	235, 305, 891
Hin1II	CATG	3 cut(s)	269, 398, 411
HinfI	GANTC	2 cut(s)	461, 927
HpaII	CCGG	3 cut(s)	235, 305, 891
HphI	GGTGA	5 cut(s)	218, 241, 352, 667, 880
Hpy166II	GTNNAC	2 cut(s)	232, 591
Hpy188I	TCNGA	4 cut(s)	558, 583, 597, 683
Hpy188III	TCNNGA	1 cut(s)	874
Hpy8I	GTNNAC	2 cut(s)	232, 591
Hpy99I	CGWCG	1 cut(s)	710
HpyAV	CCTTC	2 cut(s)	77, 197
HpyCH4III	ACNGT	3 cut(s)	321, 626, 745
HpyCH4IV	ACGT	2 cut(s)	617, 822
HpyCH4V	TGCA	3 cut(s)	56, 141, 698
HpyF3I	CTNAG	4 cut(s)	281, 531, 950, 984
HpySE526I	ACGT	2 cut(s)	617, 822
Hsp92II	CATG	3 cut(s)	269, 398, 411
Ksp22I	TGATCA	2 cut(s)	208, 687
Kzo9I	GATC	4 cut(s)	153, 208, 237, 687
LguI	GCTCTTC	1 cut(s)	558
LmnI	GCTCC	1 cut(s)	563
Lsp1109I	GCAGC	3 cut(s)	153, 682, 907
LweI	GCATC	2 cut(s)	574, 748
MaeI	CTAG	2 cut(s)	191, 960
MaeII	ACGT	2 cut(s)	617, 822
MaeIII	GTNAC	2 cut(s)	127, 250
MalI	GATC	4 cut(s)	155, 210, 239, 689
MboI	GATC	4 cut(s)	153, 208, 237, 687
MboII	GAAGA	3 cut(s)	465, 545, 679
MhlI	GDGCHC	1 cut(s)	881
MlsI	TGGCCA	2 cut(s)	339, 810
MluCI	AATT	3 cut(s)	173, 270, 844
MluNI	TGGCCA	2 cut(s)	339, 810
MlyI	GAGTC	1 cut(s)	470
Mox20I	TGGCCA	2 cut(s)	339, 810
MscI	TGGCCA	2 cut(s)	339, 810
MseI	TTAA	3 cut(s)	114, 222, 519
MslI	CAYNNNNRTG	3 cut(s)	161, 224, 264
Msp20I	TGGCCA	2 cut(s)	339, 810
MspA1I	CMGCKG	1 cut(s)	920
MspI	CCGG	3 cut(s)	235, 305, 891
MspR9I	CCNGG	5 cut(s)	180, 548, 609, 663, 807
MvaI	CCWGG	5 cut(s)	180, 548, 609, 663, 807
NdeII	GATC	4 cut(s)	153, 208, 237, 687
NlaIII	CATG	3 cut(s)	269, 398, 411
NlaIV	GGNNCC	3 cut(s)	433, 613, 901
NmuCI	GTSAC	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	558
PfeI	GAWTC	1 cut(s)	927
PflMI	CCANNNNNTGG	1 cut(s)	261
PinAI	ACCGGT	1 cut(s)	890
PkrI	GCNGC	4 cut(s)	31, 143, 697, 922
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
Ppu21I	YACGTR	1 cut(s)	618
PpuMI	RGGWCCY	1 cut(s)	569
Psp5II	RGGWCCY	1 cut(s)	569
Psp6I	CCWGG	5 cut(s)	178, 546, 607, 661, 805
PspGI	CCWGG	5 cut(s)	178, 546, 607, 661, 805
PspN4I	GGNNCC	3 cut(s)	433, 613, 901
PspPI	GGNCC	5 cut(s)	182, 302, 431, 569, 611
PspPPI	RGGWCCY	1 cut(s)	569
PstNI	CAGNNNCTG	1 cut(s)	530
RsaI	GTAC	5 cut(s)	119, 590, 620, 958, 964
RsaNI	GTAC	5 cut(s)	118, 589, 619, 957, 963
RseI	CAYNNNNRTG	3 cut(s)	161, 224, 264
SapI	GCTCTTC	1 cut(s)	558
SaqAI	TTAA	3 cut(s)	114, 222, 519
SatI	GCNGC	4 cut(s)	30, 142, 696, 921
Sau3AI	GATC	4 cut(s)	153, 208, 237, 687
Sau96I	GGNCC	5 cut(s)	182, 302, 431, 569, 611
ScaI	AGTACT	2 cut(s)	958, 964
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	5 cut(s)	180, 548, 609, 663, 807
SduI	GDGCHC	1 cut(s)	881
SfaNI	GCATC	2 cut(s)	574, 748
SgrAI	CRCCGGYG	1 cut(s)	890
SinI	GGWCC	4 cut(s)	182, 302, 431, 569
SmiMI	CAYNNNNRTG	3 cut(s)	161, 224, 264
SpeI	ACTAGT	2 cut(s)	190, 959
Sse9I	AATT	3 cut(s)	173, 270, 844
SsiI	CCGC	2 cut(s)	29, 918
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	2 cut(s)	191, 960
StyD4I	CCNGG	5 cut(s)	178, 546, 607, 661, 805
TaaI	ACNGT	3 cut(s)	321, 626, 745
TaiI	ACGT	2 cut(s)	620, 825
TaqI	TCGA	2 cut(s)	756, 906
TasI	AATT	3 cut(s)	173, 270, 844
TatI	WGTACW	2 cut(s)	956, 962
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	927
Tru1I	TTAA	3 cut(s)	114, 222, 519
Tru9I	TTAA	3 cut(s)	114, 222, 519
TscAI	CASTG	3 cut(s)	266, 326, 790
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	3 cut(s)	141, 695, 920
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	396, 618, 706
TspGWI	ACGGA	1 cut(s)	9
TspRI	CASTG	3 cut(s)	266, 326, 790
Van91I	CCANNNNNTGG	1 cut(s)	261
VpaK11BI	GGWCC	4 cut(s)	182, 302, 431, 569
XapI	RAATTY	1 cut(s)	173
XspI	CTAG	2 cut(s)	191, 960
ZrmI	AGTACT	2 cut(s)	958, 964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.