Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005869.1

Orthogroup ID

OG0003501

Physical Location & Seq

Genomic Coordinates Reverse (-)

25395 .. 30144

Gene Structure 4750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005869.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1662 bp

atggacactttcgctacttgtagtcacaagaactatagagtagttggccggttctcaaaggatgacgaaccaggttgggtcggcccctattgggttagcgaggacgaaatgctcacccctacatttcaggttacaacgaggtcattccggacgatttggattagaagtgggtcgttggccgagcatggtgtaagacaactccaaagtggctgggcagatgggccatcatatataactcagtgccctattcaaactaaccagagttatgtctataactttaccgtcactggccagagaggaactttgttctggcatgctcatatctcctggctaagagctactctctatggacccctcatcatactccctaagcacaatgattcctatccttttgccaaaccccatgaagaagttcctatcatgtttggcgagtggtggaatgttgatcctgaggctgtaattagcgaggctcttcgaactggaaatggtccaaatgtttctgatgcgtacacgattaatggccttccagggccattgtacaattgtcccagaaaagacactttcaggttaaaggttgaaccaggaaagacatacctcttgcgtttaatcaatgctgcggtcaatgatgaactctttttcagcatagcaaatcatacccttacaacagttgaagccgatgccgtctatgtaaaaccattcaagaccaatgttttactcattgcacctggacaaaccaccagtgtgcttctcaagacaaaaccacactaccccaatgccaatttcctcatgttagccagaccctatttcaccggcatgggcactttcgacaactccaccgtggctggaattctcgaatactctacaaccctctcaagtccctcttcttcaattccagtaagaaaccgtccactttttaggcctgtccttccccgaataggagatactttgtttgtcgcaaattttaatagtaaattccggagtctggcgagtgctaaatttccagcaaaggtgccccaaactgttgaaaaacggttctttttcacagtgggccaaggaaccatcccatgccccaaaaaccaaacatgccaagggccgaataaccgaaccaagtttgcagcttcttttaataacatttcctttgttcttccttcgatagcactactccaaacccatttctttggccaatatagtgaagtttactccactgactttcctacctttcctctccatccatttaactacactggcactccaccaaacaacaccaatgtgaggaatggcacaaaggttgtggttctgcccttcaatactagtgtggaactagtgatgcaagacactagcattttggggtgtgaaagccatcctctccatcttcatggcttcaatttttttgttgttggacaaggttttgggaactttgatgccaatagagacccttctagctttaacattgtcaatcccgttgaaagaaacacagttggagtgccctccgggggttgggtggcaattcgatttctagcggacaatccaggggtttggctcatgcactgccactttgatattcatttgagttggggactaaggatggtctggatagtccaagatggaaaactccctaatcagaagctgcctcctccaccgtctgatctccccaagtgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0016491 GO:0016722 GO:0042221 GO:0050896 GO:0055114 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

553

Amino Acids

61.91

Weight (kDa)

8.87

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29130
fragaria_vesca	FvH4_6g13430
malus_domestica	MD03G1087400.v1.1 MD04G1131200.v1.1 MD11G1096500.v1.1 MD12G1144300.v1.1
prunus_persica	Prupe.6G072100_v2.0.a1 Prupe.6G257700_v2.0.a1
pyrus_communis	pycom03g06930 pycom04g11940 pycom11g08180 pycom12g13880
rosa_chinensis	RchiOBHm_Chr3g0466301 RchiOBHm_Chr3g0466311 RchiOBHm_Chr5g0065931
rosa_laevigata	RLG00000024588 RLG00000035828
rosa_multiflora	Rmu_co8069514.1_g000001 Rmu_co8514891.1_g000001 Rmu_sc0000350.1_g000021 Rmu_sc0003480.1_g000018 Rmu_sc0005869.1_g000003
rosa_roxburghii	Rroxscaffold_1G00015240 Rroxscaffold_6G00414620
rosa_rugosa	Rorug03G0080800 Rorug05G0375600
rosa_samantha	Rh3AG127200 Rh3BG148500 Rh3DG149200 Rh5AG433600 Rh5BG450200 Rh5CG472500 Rh5DG463600
rosa_wichuraiana	Rw3G012010 Rw5G040650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1009
AccIII	TCCGGA	2 cut(s)	147, 975
AciI	CCGC	2 cut(s)	617, 1520
AclWI	GGATC	1 cut(s)	440
AcoI	YGGCCR	4 cut(s)	46, 177, 289, 1180
AcsI	RAATTY	4 cut(s)	846, 958, 971, 995
AfaI	GTAC	2 cut(s)	509, 539
AfiI	CCNNNNNNNGG	6 cut(s)	91, 935, 982, 1272, 1493, 1497
AgsI	TTSAA	9 cut(s)	251, 578, 671, 700, 888, 1025, 1306, 1384, 1466
AhlI	ACTAGT	2 cut(s)	1310, 1321
AjnI	CCWGG	6 cut(s)	70, 326, 526, 580, 724, 1528
AjuI	GAANNNNNNNTTGG	2 cut(s)	764, 796
AleI	CACNNNNGTG	2 cut(s)	740, 1268
AluBI	AGCT	4 cut(s)	338, 1118, 1443, 1627
AluI	AGCT	4 cut(s)	338, 1118, 1443, 1627
Alw26I	GTCTC	1 cut(s)	1425
AlwI	GGATC	1 cut(s)	440
AlwNI	CAGNNNCTG	1 cut(s)	1627
Aor13HI	TCCGGA	2 cut(s)	147, 975
ApeKI	GCWGC	3 cut(s)	614, 1115, 1627
ApoI	RAATTY	4 cut(s)	846, 958, 971, 995
AseI	ATTAAT	1 cut(s)	516
Asp700I	GAANNNNTTC	1 cut(s)	411
AspS9I	GGNCC	7 cut(s)	83, 221, 350, 488, 530, 1048, 1091
AsuC2I	CCSGG	1 cut(s)	1492
AsuHPI	GGTGA	2 cut(s)	106, 799
AsuII	TTCGAA	1 cut(s)	475
AvaII	GGWCC	2 cut(s)	350, 488
AxyI	CCTNAGG	1 cut(s)	450
BaeGI	GKGCMC	4 cut(s)	245, 821, 1014, 1488
BalI	TGGCCA	2 cut(s)	291, 1182
BanI	GGYRCC	1 cut(s)	1009
BbvI	GCAGC	3 cut(s)	601, 1127, 1614
BccI	CCATC	8 cut(s)	212, 232, 1067, 1236, 1368, 1377, 1579, 1598
BceAI	ACGGC	1 cut(s)	665
BciT130I	CCWGG	6 cut(s)	72, 328, 528, 582, 726, 1530
BcnI	CCSGG	1 cut(s)	1492
BcoDI	GTCTC	1 cut(s)	1425
BcuI	ACTAGT	2 cut(s)	1310, 1321
BfaI	CTAG	5 cut(s)	1311, 1322, 1338, 1440, 1517
BfmI	CTRYAG	1 cut(s)	34
BisI	GCNGC	3 cut(s)	615, 1116, 1628
BlsI	GCNGC	3 cut(s)	616, 1117, 1629
Bme1390I	CCNGG	7 cut(s)	72, 328, 528, 582, 726, 1492, 1530
Bme18I	GGWCC	2 cut(s)	350, 488
BmgT120I	GGNCC	7 cut(s)	83, 221, 350, 488, 530, 1048, 1091
BmiI	GGNNCC	4 cut(s)	85, 352, 1011, 1057
BmrFI	CCNGG	7 cut(s)	72, 328, 528, 582, 726, 1492, 1530
BmsI	GCATC	4 cut(s)	493, 667, 1317, 1411
BplI	GAGNNNNNCTC	2 cut(s)	327, 359
Bpu10I	CCTNAGC	1 cut(s)	369
Bpu14I	TTCGAA	1 cut(s)	475
BpuEI	CTTGAG	2 cut(s)	734, 856
BpuMI	CCSGG	1 cut(s)	1492
BsaBI	GATNNNNATC	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	1425
BsaJI	CCNNGG	6 cut(s)	527, 837, 1051, 1087, 1491, 1529
BsaWI	WCCGGW	2 cut(s)	147, 975
BsaXI	ACNNNNNCTCC	2 cut(s)	1234, 1264
Bsc4I	CCNNNNNNNGG	6 cut(s)	91, 935, 982, 1272, 1493, 1497
Bse118I	RCCGGY	2 cut(s)	48, 809
Bse1I	ACTGG	5 cut(s)	292, 484, 738, 893, 1249
Bse21I	CCTNAGG	1 cut(s)	450
Bse3DI	GCAATG	1 cut(s)	717
Bse8I	GATNNNNATC	1 cut(s)	384
BseAI	TCCGGA	2 cut(s)	147, 975
BseBI	CCWGG	6 cut(s)	72, 328, 528, 582, 726, 1530
BseDI	CCNNGG	6 cut(s)	527, 837, 1051, 1087, 1491, 1529
BseGI	GGATG	5 cut(s)	67, 1059, 1228, 1360, 1590
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	6 cut(s)	91, 935, 982, 1272, 1493, 1497
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	2 cut(s)	251, 441
BseNI	ACTGG	5 cut(s)	292, 484, 738, 893, 1249
BseRI	GAGGAG	1 cut(s)	1623
BseSI	GKGCMC	4 cut(s)	245, 821, 1014, 1488
BseXI	GCAGC	3 cut(s)	601, 1127, 1614
BseYI	CCCAGC	1 cut(s)	210
BshNI	GGYRCC	1 cut(s)	1009
BsiSI	CCGG	5 cut(s)	49, 148, 810, 976, 1491
BslFI	GGGAC	3 cut(s)	531, 861, 1590
BslI	CCNNNNNNNGG	6 cut(s)	91, 935, 982, 1272, 1493, 1497
BsmAI	GTCTC	1 cut(s)	1425
BsmFI	GGGAC	3 cut(s)	531, 861, 1590
Bso31I	GGTCTC	1 cut(s)	1425
Bsp119I	TTCGAA	1 cut(s)	475
Bsp1286I	GDGCHC	4 cut(s)	245, 821, 1014, 1488
Bsp13I	TCCGGA	2 cut(s)	147, 975
Bsp1407I	TGTACA	1 cut(s)	537
Bsp143I	GATC	2 cut(s)	445, 1645
BspACI	CCGC	2 cut(s)	617, 1520
BspCNI	CTCAG	2 cut(s)	250, 442
BspEI	TCCGGA	2 cut(s)	147, 975
BspLI	GGNNCC	4 cut(s)	85, 352, 1011, 1057
BspPI	GGATC	1 cut(s)	440
BspQI	GCTCTTC	1 cut(s)	477
BspT104I	TTCGAA	1 cut(s)	475
BspT107I	GGYRCC	1 cut(s)	1009
BspTNI	GGTCTC	1 cut(s)	1425
BsrDI	GCAATG	1 cut(s)	717
BsrFI	RCCGGY	2 cut(s)	48, 809
BsrGI	TGTACA	1 cut(s)	537
BsrI	ACTGG	5 cut(s)	292, 484, 738, 893, 1249
BssAI	RCCGGY	2 cut(s)	48, 809
BssECI	CCNNGG	6 cut(s)	527, 837, 1051, 1087, 1491, 1529
BssMI	GATC	2 cut(s)	445, 1645
BssT1I	CCWWGG	2 cut(s)	1051, 1087
Bst2UI	CCWGG	6 cut(s)	72, 328, 528, 582, 726, 1530
Bst4CI	ACNGT	9 cut(s)	283, 667, 838, 905, 1021, 1032, 1045, 1477, 1641
Bst6I	CTCTTC	2 cut(s)	477, 886
BstAUI	TGTACA	1 cut(s)	537
BstBI	TTCGAA	1 cut(s)	475
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	5 cut(s)	237, 332, 369, 450, 1580
BstDSI	CCRYGG	1 cut(s)	837
BstF5I	GGATG	5 cut(s)	67, 1059, 1228, 1360, 1590
BstKTI	GATC	2 cut(s)	448, 1648
BstMAI	GTCTC	1 cut(s)	1425
BstMBI	GATC	2 cut(s)	445, 1645
BstNI	CCWGG	6 cut(s)	72, 328, 528, 582, 726, 1530
BstNSI	RCATGY	2 cut(s)	317, 1086
BstSCI	CCNGG	7 cut(s)	70, 326, 526, 580, 724, 1490, 1528
BstSFI	CTRYAG	1 cut(s)	34
BstSLI	GKGCMC	4 cut(s)	245, 821, 1014, 1488
BstV1I	GCAGC	3 cut(s)	601, 1127, 1614
BstXI	CCANNNNNNTGG	3 cut(s)	1178, 1376, 1536
Bsu36I	CCTNAGG	1 cut(s)	450
BtgI	CCRYGG	1 cut(s)	837
BtsCI	GGATG	5 cut(s)	67, 1059, 1228, 1360, 1590
BtsI	GCAGTG	1 cut(s)	1546
BtsIMutI	CAGTG	7 cut(s)	245, 285, 745, 1050, 1203, 1242, 1546
Cac8I	GCNNGC	1 cut(s)	315
CaiI	CAGNNNCTG	1 cut(s)	1627
Cfr10I	RCCGGY	2 cut(s)	48, 809
Cfr13I	GGNCC	7 cut(s)	83, 221, 350, 488, 530, 1048, 1091
CsiI	ACCWGGT	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	508, 538
CspCI	CAANNNNNGTGG	2 cut(s)	1272, 1307
CviQI	GTAC	2 cut(s)	508, 538
DdeI	CTNAG	5 cut(s)	237, 332, 369, 450, 1580
DpnI	GATC	2 cut(s)	447, 1647
DpnII	GATC	2 cut(s)	445, 1645
EaeI	YGGCCR	4 cut(s)	46, 177, 289, 1180
Eam1104I	CTCTTC	2 cut(s)	477, 886
EarI	CTCTTC	2 cut(s)	477, 886
Eco130I	CCWWGG	2 cut(s)	1051, 1087
Eco147I	AGGCCT	1 cut(s)	919
Eco31I	GGTCTC	1 cut(s)	1425
Eco47I	GGWCC	2 cut(s)	350, 488
Eco81I	CCTNAGG	1 cut(s)	450
EcoRI	GAATTC	1 cut(s)	846
EcoRII	CCWGG	6 cut(s)	70, 326, 526, 580, 724, 1528
EcoT14I	CCWWGG	2 cut(s)	1051, 1087
ErhI	CCWWGG	2 cut(s)	1051, 1087
FalI	AAGNNNNNCTT	2 cut(s)	865, 897
FaqI	GGGAC	3 cut(s)	531, 861, 1590
Fnu4HI	GCNGC	3 cut(s)	615, 1116, 1628
FokI	GGATG	5 cut(s)	74, 1046, 1215, 1347, 1597
Fsp4HI	GCNGC	3 cut(s)	615, 1116, 1628
FspBI	CTAG	5 cut(s)	1311, 1322, 1338, 1440, 1517
GluI	GCNGC	3 cut(s)	615, 1116, 1628
GsaI	CCCAGC	1 cut(s)	214
HapII	CCGG	5 cut(s)	49, 148, 810, 976, 1491
HinfI	GANTC	2 cut(s)	380, 979
HpaII	CCGG	5 cut(s)	49, 148, 810, 976, 1491
HphI	GGTGA	2 cut(s)	106, 799
Hpy166II	GTNNAC	3 cut(s)	510, 908, 1198
Hpy188I	TCNGA	3 cut(s)	502, 1623, 1645
Hpy188III	TCNNGA	7 cut(s)	148, 449, 700, 751, 851, 976, 1591
Hpy8I	GTNNAC	3 cut(s)	510, 908, 1198
HpyAV	CCTTC	5 cut(s)	533, 935, 1158, 1312, 1446
HpyCH4III	ACNGT	9 cut(s)	283, 667, 838, 905, 1021, 1032, 1045, 1477, 1641
HpyCH4V	TGCA	4 cut(s)	722, 1115, 1330, 1546
HpyF3I	CTNAG	5 cut(s)	237, 332, 369, 450, 1580
Kpn2I	TCCGGA	2 cut(s)	147, 975
Kzo9I	GATC	2 cut(s)	445, 1645
LguI	GCTCTTC	1 cut(s)	477
Lsp1109I	GCAGC	3 cut(s)	601, 1127, 1614
LweI	GCATC	4 cut(s)	493, 667, 1317, 1411
MabI	ACCWGGT	1 cut(s)	70
MaeI	CTAG	5 cut(s)	1311, 1322, 1338, 1440, 1517
MaeIII	GTNAC	3 cut(s)	23, 130, 283
MalI	GATC	2 cut(s)	447, 1647
MboI	GATC	2 cut(s)	445, 1645
MboII	GAAGA	6 cut(s)	419, 464, 873, 876, 1136, 1364
MfeI	CAATTG	1 cut(s)	541
MhlI	GDGCHC	4 cut(s)	245, 821, 1014, 1488
MlsI	TGGCCA	2 cut(s)	291, 1182
MluNI	TGGCCA	2 cut(s)	291, 1182
MlyI	GAGTC	1 cut(s)	988
MmeI	TCCRAC	2 cut(s)	1378, 1459
Mox20I	TGGCCA	2 cut(s)	291, 1182
MroI	TCCGGA	2 cut(s)	147, 975
MroXI	GAANNNNTTC	1 cut(s)	411
MscI	TGGCCA	2 cut(s)	291, 1182
MseI	TTAA	7 cut(s)	516, 569, 605, 963, 1125, 1236, 1446
MslI	CAYNNNNRTG	4 cut(s)	740, 812, 1268, 1374
Msp20I	TGGCCA	2 cut(s)	291, 1182
MspI	CCGG	5 cut(s)	49, 148, 810, 976, 1491
MspR9I	CCNGG	7 cut(s)	72, 328, 528, 582, 726, 1492, 1530
MunI	CAATTG	1 cut(s)	541
MvaI	CCWGG	6 cut(s)	72, 328, 528, 582, 726, 1530
NciI	CCSGG	1 cut(s)	1492
NdeII	GATC	2 cut(s)	445, 1645
NlaIV	GGNNCC	4 cut(s)	85, 352, 1011, 1057
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	2 cut(s)	23, 283
NspI	RCATGY	2 cut(s)	317, 1086
NspV	TTCGAA	1 cut(s)	475
OliI	CACNNNNGTG	2 cut(s)	740, 1268
PaeI	GCATGC	1 cut(s)	317
PceI	AGGCCT	1 cut(s)	919
PciSI	GCTCTTC	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	380
PkrI	GCNGC	3 cut(s)	616, 1117, 1629
PleI	GAGTC	1 cut(s)	987
PpsI	GAGTC	1 cut(s)	987
PshBI	ATTAAT	1 cut(s)	516
Psp6I	CCWGG	6 cut(s)	70, 326, 526, 580, 724, 1528
PspFI	CCCAGC	1 cut(s)	210
PspGI	CCWGG	6 cut(s)	70, 326, 526, 580, 724, 1528
PspN4I	GGNNCC	4 cut(s)	85, 352, 1011, 1057
PspPI	GGNCC	7 cut(s)	83, 221, 350, 488, 530, 1048, 1091
PstNI	CAGNNNCTG	1 cut(s)	1627
RsaI	GTAC	2 cut(s)	509, 539
RsaNI	GTAC	2 cut(s)	508, 538
RseI	CAYNNNNRTG	4 cut(s)	740, 812, 1268, 1374
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	7 cut(s)	516, 569, 605, 963, 1125, 1236, 1446
SatI	GCNGC	3 cut(s)	615, 1116, 1628
Sau3AI	GATC	2 cut(s)	445, 1645
Sau96I	GGNCC	7 cut(s)	83, 221, 350, 488, 530, 1048, 1091
SchI	GAGTC	1 cut(s)	988
ScrFI	CCNGG	7 cut(s)	72, 328, 528, 582, 726, 1492, 1530
SduI	GDGCHC	4 cut(s)	245, 821, 1014, 1488
SexAI	ACCWGGT	1 cut(s)	70
SfaNI	GCATC	4 cut(s)	493, 667, 1317, 1411
SfcI	CTRYAG	1 cut(s)	34
SfuI	TTCGAA	1 cut(s)	475
SinI	GGWCC	2 cut(s)	350, 488
SmiMI	CAYNNNNRTG	4 cut(s)	740, 812, 1268, 1374
SmlI	CTYRAG	2 cut(s)	749, 871
SmoI	CTYRAG	2 cut(s)	749, 871
SpeI	ACTAGT	2 cut(s)	1310, 1321
SphI	GCATGC	1 cut(s)	317
SseBI	AGGCCT	1 cut(s)	919
SsiI	CCGC	2 cut(s)	617, 1520
SspMI	CTAG	5 cut(s)	1311, 1322, 1338, 1440, 1517
StuI	AGGCCT	1 cut(s)	919
StyD4I	CCNGG	7 cut(s)	70, 326, 526, 580, 724, 1490, 1528
StyI	CCWWGG	2 cut(s)	1051, 1087
TaaI	ACNGT	9 cut(s)	283, 667, 838, 905, 1021, 1032, 1045, 1477, 1641
TaqI	TCGA	5 cut(s)	475, 825, 852, 1151, 1510
TatI	WGTACW	1 cut(s)	537
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	7 cut(s)	516, 569, 605, 963, 1125, 1236, 1446
Tru9I	TTAA	7 cut(s)	516, 569, 605, 963, 1125, 1236, 1446
TscAI	CASTG	7 cut(s)	245, 292, 745, 1050, 1210, 1249, 1553
TseFI	GTSAC	2 cut(s)	23, 283
TseI	GCWGC	3 cut(s)	614, 1115, 1627
Tsp45I	GTSAC	2 cut(s)	23, 283
TspDTI	ATGAA	4 cut(s)	420, 642, 1364, 1553
TspRI	CASTG	7 cut(s)	245, 292, 745, 1050, 1210, 1249, 1553
VpaK11BI	GGWCC	2 cut(s)	350, 488
VspI	ATTAAT	1 cut(s)	516
XapI	RAATTY	4 cut(s)	846, 958, 971, 995
XceI	RCATGY	2 cut(s)	317, 1086
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	5 cut(s)	1311, 1322, 1338, 1440, 1517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.