RchiOBHm_Chr3g0466301

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0003501
Physical Location & Seq
Reverse (-)
12772266 .. 12773238
973 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43239

Sequence Viewer

Length: 504 bp
ATGCTTCAGTCACATTTCTTTGGACAGTCCAATGTGACTTACAGAACTGATTTTCCTAGCAAGCCAGTTGTGCAATTTAACTACACAGGAACTGCACCAAATAACACTAATGTGAGCAATGCAACAAGGGCAGTGGTGTTACCATTCAACACAACTGTGGAGGTGGTGTTGCAAGACACAAGCATTATTGGTGCGGAGAGCCACCCACTTCATCTTCATGGGTTCAATTTCTTTGTTGTTGGACAAGGTTTTGGAAACTTTGATCAGAACAAAGATCCTGCAAAGTTCAATCTGGTGGACCCTGTTGAGAGGAACACTATAGGTGTTCCGGCCGGTGGTTGGGTTGCCATTCGTTTCTTGGCAGACAATCCAGGAGTGTGGTTTATGCACTGCCATTTGGAAATTCATACAAGCTGGGGACTGAGGATGGCTTGGATCGTTCAGGATGGGCCACAACCAAATCAGAAGCTACCTCCACCACCGGCAGATCTTCCAAAGTGTTGA

Protein Analysis

167

Amino Acids

18.51

Weight (kDa)

6.35

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_2 PF07731 18 - 149 4.4e-44 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 194
AclWI GGATC 2 cut(s) 269, 443
AcoI YGGCCR 1 cut(s) 330
AcsI RAATTY 1 cut(s) 402
AfiI CCNNNNNNNGG 2 cut(s) 335, 339
AgsI TTSAA 3 cut(s) 148, 226, 289
AjnI CCWGG 1 cut(s) 370
AleI CACNNNNGTG 2 cut(s) 110, 155
AloI GAACNNNNNNTCC 2 cut(s) 37, 69
AluBI AGCT 2 cut(s) 414, 469
AluI AGCT 2 cut(s) 414, 469
AlwI GGATC 2 cut(s) 269, 443
AlwNI CAGNNNCTG 1 cut(s) 92
AoxI GGCC 2 cut(s) 330, 449
ApoI RAATTY 1 cut(s) 402
AspS9I GGNCC 2 cut(s) 298, 449
AvaII GGWCC 1 cut(s) 298
BccI CCATC 2 cut(s) 421, 440
BciT130I CCWGG 1 cut(s) 372
BclI TGATCA 1 cut(s) 262
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 318
BglII AGATCT 1 cut(s) 487
Bme1390I CCNGG 1 cut(s) 372
Bme18I GGWCC 1 cut(s) 298
BmgT120I GGNCC 2 cut(s) 298, 449
BmiI GGNNCC 1 cut(s) 300
BmrFI CCNGG 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 2 cut(s) 335, 339
Bse118I RCCGGY 2 cut(s) 332, 481
Bse1I ACTGG 1 cut(s) 65
Bse3DI GCAATG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 372
BseGI GGATG 2 cut(s) 432, 451
BseLI CCNNNNNNNGG 2 cut(s) 335, 339
BseMI GCAATG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 413
BseNI ACTGG 1 cut(s) 65
BseX3I CGGCCG 1 cut(s) 330
BseYI CCCAGC 1 cut(s) 414
BsgI GTGCAG 1 cut(s) 78
Bsh1285I CGRYCG 1 cut(s) 333
BshFI GGCC 2 cut(s) 332, 451
BsiEI CGRYCG 1 cut(s) 333
BsiSI CCGG 3 cut(s) 329, 333, 482
BslFI GGGAC 1 cut(s) 432
BslI CCNNNNNNNGG 2 cut(s) 335, 339
BsmFI GGGAC 1 cut(s) 432
BsnI GGCC 2 cut(s) 332, 451
Bsp143I GATC 4 cut(s) 262, 274, 435, 487
BspACI CCGC 1 cut(s) 194
BspANI GGCC 2 cut(s) 332, 451
BspCNI CTCAG 1 cut(s) 414
BspLI GGNNCC 1 cut(s) 300
BspPI GGATC 2 cut(s) 269, 443
BsrDI GCAATG 1 cut(s) 124
BsrFI RCCGGY 2 cut(s) 332, 481
BsrI ACTGG 1 cut(s) 65
BssAI RCCGGY 2 cut(s) 332, 481
BssMI GATC 4 cut(s) 262, 274, 435, 487
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 2 cut(s) 27, 157
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 422
BstF5I GGATG 2 cut(s) 432, 451
BstKTI GATC 4 cut(s) 265, 277, 438, 490
BstMBI GATC 4 cut(s) 262, 274, 435, 487
BstMCI CGRYCG 1 cut(s) 333
BstMWI GCNNNNNNNGC 2 cut(s) 70, 128
BstNI CCWGG 1 cut(s) 372
BstSCI CCNGG 1 cut(s) 370
BstSFI CTRYAG 1 cut(s) 318
BstX2I RGATCY 2 cut(s) 274, 487
BstXI CCANNNNNNTGG 1 cut(s) 378
BstYI RGATCY 2 cut(s) 274, 487
BstZI CGGCCG 1 cut(s) 330
BsuRI GGCC 2 cut(s) 332, 451
BtsCI GGATG 2 cut(s) 432, 451
BtsI GCAGTG 2 cut(s) 138, 388
BtsIMutI CAGTG 2 cut(s) 138, 388
Cac8I GCNNGC 1 cut(s) 62
CaiI CAGNNNCTG 1 cut(s) 92
Cfr10I RCCGGY 2 cut(s) 332, 481
Cfr13I GGNCC 2 cut(s) 298, 449
CspCI CAANNNNNGTGG 2 cut(s) 114, 149
CviAII CATG 1 cut(s) 218
CviJI RGCY 7 cut(s) 64, 201, 332, 414, 431, 451, 469
CviKI_1 RGCY 7 cut(s) 64, 201, 332, 414, 431, 451, 469
DdeI CTNAG 1 cut(s) 422
DpnI GATC 4 cut(s) 264, 276, 437, 489
DpnII GATC 4 cut(s) 262, 274, 435, 487
EaeI YGGCCR 1 cut(s) 330
EagI CGGCCG 1 cut(s) 330
EclXI CGGCCG 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 298
Eco52I CGGCCG 1 cut(s) 330
EcoRII CCWGG 1 cut(s) 370
FaeI CATG 1 cut(s) 221
FaiI YATR 4 cut(s) 219, 320, 386, 408
FaqI GGGAC 1 cut(s) 432
FatI CATG 1 cut(s) 217
FbaI TGATCA 1 cut(s) 262
FokI GGATG 2 cut(s) 439, 458
FspBI CTAG 1 cut(s) 57
GsaI CCCAGC 1 cut(s) 418
HaeIII GGCC 2 cut(s) 332, 451
HapII CCGG 3 cut(s) 329, 333, 482
Hin1II CATG 1 cut(s) 221
HpaII CCGG 3 cut(s) 329, 333, 482
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 2 cut(s) 267, 465
Hpy188III TCNNGA 1 cut(s) 443
Hpy8I GTNNAC 1 cut(s) 298
HpyCH4III ACNGT 2 cut(s) 27, 157
HpyCH4V TGCA 6 cut(s) 73, 95, 122, 172, 281, 388
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 128
HpyF3I CTNAG 1 cut(s) 422
Hsp92II CATG 1 cut(s) 221
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 4 cut(s) 262, 274, 435, 487
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 3 cut(s) 9, 34, 138
MalI GATC 4 cut(s) 264, 276, 437, 489
MboI GATC 4 cut(s) 262, 274, 435, 487
MboII GAAGA 2 cut(s) 206, 482
MflI RGATCY 2 cut(s) 274, 487
MluCI AATT 3 cut(s) 74, 226, 402
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 4 cut(s) 154, 303, 417, 483
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 3 cut(s) 110, 155, 216
MspI CCGG 3 cut(s) 329, 333, 482
MspR9I CCNGG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 372
MwoI GCNNNNNNNGC 2 cut(s) 70, 128
NdeII GATC 4 cut(s) 262, 274, 435, 487
NlaIII CATG 1 cut(s) 221
NlaIV GGNNCC 1 cut(s) 300
NmuCI GTSAC 2 cut(s) 9, 34
OliI CACNNNNGTG 2 cut(s) 110, 155
PfoI TCCNGGA 1 cut(s) 370
Psp6I CCWGG 1 cut(s) 370
PspFI CCCAGC 1 cut(s) 414
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 2 cut(s) 298, 449
PstNI CAGNNNCTG 1 cut(s) 92
PsuI RGATCY 2 cut(s) 274, 487
RseI CAYNNNNRTG 3 cut(s) 110, 155, 216
SaqAI TTAA 1 cut(s) 78
Sau3AI GATC 4 cut(s) 262, 274, 435, 487
Sau96I GGNCC 2 cut(s) 298, 449
ScrFI CCNGG 1 cut(s) 372
SetI ASST 6 cut(s) 165, 250, 325, 416, 471, 475
SfcI CTRYAG 1 cut(s) 318
SinI GGWCC 1 cut(s) 298
SmiMI CAYNNNNRTG 3 cut(s) 110, 155, 216
Sse9I AATT 3 cut(s) 74, 226, 402
SsiI CCGC 1 cut(s) 194
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 370
TaaI ACNGT 2 cut(s) 27, 157
TasI AATT 3 cut(s) 74, 226, 402
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 2 cut(s) 138, 395
TseFI GTSAC 2 cut(s) 9, 34
Tsp45I GTSAC 2 cut(s) 9, 34
TspDTI ATGAA 3 cut(s) 200, 206, 395
TspRI CASTG 2 cut(s) 138, 395
VpaK11BI GGWCC 1 cut(s) 298
XapI RAATTY 1 cut(s) 402
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.