Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8069514.1

Orthogroup ID

OG0003501

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 367

Gene Structure 367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8069514.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

catcttcatgggttcaatttctttgttgttggacaaggttttggaaactttgatcagaacaaagatcctgcaaagttcaatctggtggaccctgttgagaggaacactataggtgttccggccggtggttgggttgccattcgtttcttggcagacaatccaggagtgtggtttatgcactgccatttggaaattcatacaagctggggactgaggatggcttggatcgttcaggatgggccacaaccaaatcagaagctacctccaccaccggcagatcttccaaagtgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016722 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

97

Amino Acids

10.86

Weight (kDa)

6.54

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29130
fragaria_vesca	FvH4_6g13430
malus_domestica	MD03G1087400.v1.1 MD04G1131200.v1.1 MD11G1096500.v1.1 MD12G1144300.v1.1
prunus_persica	Prupe.6G072100_v2.0.a1 Prupe.6G257700_v2.0.a1
pyrus_communis	pycom03g06930 pycom04g11940 pycom11g08180 pycom12g13880
rosa_chinensis	RchiOBHm_Chr3g0466301 RchiOBHm_Chr3g0466311 RchiOBHm_Chr5g0065931
rosa_laevigata	RLG00000024588 RLG00000035828
rosa_multiflora	Rmu_co8069514.1_g000001 Rmu_co8514891.1_g000001 Rmu_sc0000350.1_g000021 Rmu_sc0003480.1_g000018 Rmu_sc0005869.1_g000003
rosa_roxburghii	Rroxscaffold_1G00015240 Rroxscaffold_6G00414620
rosa_rugosa	Rorug03G0080800 Rorug05G0375600
rosa_samantha	Rh3AG127200 Rh3BG148500 Rh3DG149200 Rh5AG433600 Rh5BG450200 Rh5CG472500 Rh5DG463600
rosa_wichuraiana	Rw3G012010 Rw5G040650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	59, 233
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	192
AfiI	CCNNNNNNNGG	2 cut(s)	125, 129
AgsI	TTSAA	2 cut(s)	16, 79
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	2 cut(s)	204, 259
AluI	AGCT	2 cut(s)	204, 259
AlwI	GGATC	2 cut(s)	59, 233
AoxI	GGCC	2 cut(s)	120, 239
ApoI	RAATTY	1 cut(s)	192
AspS9I	GGNCC	2 cut(s)	88, 239
AvaII	GGWCC	1 cut(s)	88
BccI	CCATC	2 cut(s)	211, 230
BciT130I	CCWGG	1 cut(s)	162
BclI	TGATCA	1 cut(s)	52
BfmI	CTRYAG	1 cut(s)	108
BglII	AGATCT	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	2 cut(s)	88, 239
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 129
Bse118I	RCCGGY	2 cut(s)	122, 271
BseBI	CCWGG	1 cut(s)	162
BseGI	GGATG	2 cut(s)	222, 241
BseLI	CCNNNNNNNGG	2 cut(s)	125, 129
BseMII	CTCAG	1 cut(s)	203
BseX3I	CGGCCG	1 cut(s)	120
BseYI	CCCAGC	1 cut(s)	204
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	122, 241
BsiEI	CGRYCG	1 cut(s)	123
BsiSI	CCGG	3 cut(s)	119, 123, 272
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	2 cut(s)	125, 129
BsmFI	GGGAC	1 cut(s)	222
BsnI	GGCC	2 cut(s)	122, 241
Bsp143I	GATC	4 cut(s)	52, 64, 225, 277
BspANI	GGCC	2 cut(s)	122, 241
BspCNI	CTCAG	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	90
BspPI	GGATC	2 cut(s)	59, 233
BsrFI	RCCGGY	2 cut(s)	122, 271
BssAI	RCCGGY	2 cut(s)	122, 271
BssMI	GATC	4 cut(s)	52, 64, 225, 277
Bst2UI	CCWGG	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	212
BstF5I	GGATG	2 cut(s)	222, 241
BstKTI	GATC	4 cut(s)	55, 67, 228, 280
BstMBI	GATC	4 cut(s)	52, 64, 225, 277
BstMCI	CGRYCG	1 cut(s)	123
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	108
BstX2I	RGATCY	2 cut(s)	64, 277
BstXI	CCANNNNNNTGG	1 cut(s)	168
BstYI	RGATCY	2 cut(s)	64, 277
BstZI	CGGCCG	1 cut(s)	120
BsuRI	GGCC	2 cut(s)	122, 241
BtsCI	GGATG	2 cut(s)	222, 241
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	178
Cfr10I	RCCGGY	2 cut(s)	122, 271
Cfr13I	GGNCC	2 cut(s)	88, 239
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	5 cut(s)	122, 204, 221, 241, 259
CviKI_1	RGCY	5 cut(s)	122, 204, 221, 241, 259
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	4 cut(s)	54, 66, 227, 279
DpnII	GATC	4 cut(s)	52, 64, 225, 277
EaeI	YGGCCR	1 cut(s)	120
EagI	CGGCCG	1 cut(s)	120
EclXI	CGGCCG	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	88
Eco52I	CGGCCG	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	160
FaeI	CATG	1 cut(s)	11
FaiI	YATR	4 cut(s)	9, 110, 176, 198
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	1 cut(s)	7
FbaI	TGATCA	1 cut(s)	52
FokI	GGATG	2 cut(s)	229, 248
GsaI	CCCAGC	1 cut(s)	208
HaeIII	GGCC	2 cut(s)	122, 241
HapII	CCGG	3 cut(s)	119, 123, 272
Hin1II	CATG	1 cut(s)	11
HpaII	CCGG	3 cut(s)	119, 123, 272
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	57, 255
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	88
HpyCH4V	TGCA	2 cut(s)	71, 178
HpyF3I	CTNAG	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	11
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	4 cut(s)	52, 64, 225, 277
MalI	GATC	4 cut(s)	54, 66, 227, 279
MboI	GATC	4 cut(s)	52, 64, 225, 277
MboII	GAAGA	1 cut(s)	272
MflI	RGATCY	2 cut(s)	64, 277
MluCI	AATT	2 cut(s)	16, 192
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	3 cut(s)	93, 207, 273
MslI	CAYNNNNRTG	1 cut(s)	6
MspI	CCGG	3 cut(s)	119, 123, 272
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
NdeII	GATC	4 cut(s)	52, 64, 225, 277
NlaIII	CATG	1 cut(s)	11
NlaIV	GGNNCC	1 cut(s)	90
PfoI	TCCNGGA	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	2 cut(s)	88, 239
PsuI	RGATCY	2 cut(s)	64, 277
RseI	CAYNNNNRTG	1 cut(s)	6
Sau3AI	GATC	4 cut(s)	52, 64, 225, 277
Sau96I	GGNCC	2 cut(s)	88, 239
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	5 cut(s)	40, 115, 206, 261, 265
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	6
Sse9I	AATT	2 cut(s)	16, 192
StyD4I	CCNGG	1 cut(s)	160
TasI	AATT	2 cut(s)	16, 192
TscAI	CASTG	1 cut(s)	185
TspDTI	ATGAA	1 cut(s)	185
TspRI	CASTG	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	88
XapI	RAATTY	1 cut(s)	192
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.