Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003501

Physical Location & Seq

Genomic Coordinates Forward (+)

50671305 .. 50688458

Gene Structure 17154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0375600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

ATGGCCAACTTCTCCAACTTCGCTGAATGGGATGATGACATTGAAAGGTCTGATAGAGAATTATCAAAGCACCCTGGTGTACCAATAGTCTGCGCAATAATAATGGTCCTTTTTCCACCATTACAACTACTGGATAATTCCGGTCATGATGGAATATTTGGCGTATCATGTATGTTGTATCTGTTCCTGGATCCTCTGTTTCTGTATGCTCCTCTTATCAACGAGCAAACCAAGTGTGTCGTGTTGGACAACAGAGTGAAGATAGCAGCTCTTGTTCTTCGATCATTTGGAGATGTTTGTCACCTAATCAGAATATATCTTGGCATTAAGGATGGCTGGGGGAAGTTCCCTTCTCTTAGGAAAAAGCTGAGGCTAGCAAATGACATGGTGTCTATTCTTCCTATTCCACAAGTTGCAATTTTAATTTTTTTTCCAAACATGAGGGGCTCCAACTCTTTGAAGATAATGACGTTTCTCAACTCCCTTGTTGCATTGCAATATCTTCTACGAGTTTACCCCATCTATGTACTGTTTAATGAAATAATTAACACGGAGAACATTTGCGATAGGAGAGACAGGAATCCAAAATGGTTATCAATCGTCGTCCATTCAAAATGGTTGTCGATTGTCGTCAATATGATTGGGTACATTATTGCCAGCCATATATTTGGAGCATTTTGGTATTTTTTCTCCATCCAAAGAGAGATACAGTGTTGGGAACATGCTTGCAGAATGGAAATTGGATGTGAATTCAGTACTTCATGTGTTCAAAATACACACAGAAATATCACAAAACTTCTAAATAAACATTGCCCTGTAAATCCACTAGATAAACAAGTATTCGATTTTGGCGTATTTCAAGATGCTTTACAATCCGGCATGCAAAGATCAACAAATTTTTCACAAAAGTTCTTGCAATGTTTATCGTGGGGCATACGAAATATGAGTTCTTTTGGTTCAAACCTCAGTGCTACTAGTACAGATGGAGGGGAAAACGTGCTTGTGGTTGTCTTTTCGATATGTGGCTTGGGATTGTTTATGTATCTCTTGGGACATGTGCAGACATTTATGCAGAAAGTTAGCAAATCATATACTATCCAACAGAAGATGAAAATGACTAATATCCGATCCATATTAAATAAATATGGCCTATCTGATGAGAATCATGAGATGGAGAGAAAAATCAAGCTTGCGGTAAAACATAAACTTGAGGAAGATGATAGTCATATTGTAGAGGATATGTTTTCGATTCTTTCCTTAAGAGGAGCTGAAAATTTAGCTATGGAGATCAAATGCAGTCTCTTCATGGATAAGCTCAAGAAAGTCGATGGGCTTAAAGATAAAGGGAAAGATGTTTTGAAAAAAATCTGTGAGCATTTTGAGCCAATGATCTACAGTAAGGGATGCTACATTATTCGAGAGGGGGAGCCACTTGATATGATGTTCTTCGTCACACGAGGCAGTGAGCCCATGAAAGCACTGGCTAAAGAACCAATTAAGATCACAGGAAAAGAGAAACTGAGATCCAGCTGTCCTGAATTAAAGAAACCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0016491 GO:0016722 GO:0042221 GO:0050896 GO:0055114 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

518

Amino Acids

59.33

Weight (kDa)

8.78

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29130
fragaria_vesca	FvH4_6g13430
malus_domestica	MD03G1087400.v1.1 MD04G1131200.v1.1 MD11G1096500.v1.1 MD12G1144300.v1.1
prunus_persica	Prupe.6G072100_v2.0.a1 Prupe.6G257700_v2.0.a1
pyrus_communis	pycom03g06930 pycom04g11940 pycom11g08180 pycom12g13880
rosa_chinensis	RchiOBHm_Chr3g0466301 RchiOBHm_Chr3g0466311 RchiOBHm_Chr5g0065931
rosa_laevigata	RLG00000024588 RLG00000035828
rosa_multiflora	Rmu_co8069514.1_g000001 Rmu_co8514891.1_g000001 Rmu_sc0000350.1_g000021 Rmu_sc0003480.1_g000018 Rmu_sc0005869.1_g000003
rosa_roxburghii	Rroxscaffold_1G00015240 Rroxscaffold_6G00414620
rosa_rugosa	Rorug03G0080800 Rorug05G0375600
rosa_samantha	Rh3AG127200 Rh3BG148500 Rh3DG149200 Rh5AG433600 Rh5BG450200 Rh5CG472500 Rh5DG463600
rosa_wichuraiana	Rw3G012010 Rw5G040650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	94
AciI	CCGC	1 cut(s)	1193
AclWI	GGATC	4 cut(s)	185, 198, 1122, 1518
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	749, 895, 1273
AfaI	GTAC	5 cut(s)	81, 528, 647, 757, 979
AflII	CTTAAG	1 cut(s)	1258
AflIII	ACRYGT	1 cut(s)	1054
AgsI	TTSAA	7 cut(s)	44, 460, 612, 770, 860, 960, 1360
AhdI	GACNNNNNGTC	1 cut(s)	388
AhlI	ACTAGT	1 cut(s)	974
AjnI	CCWGG	2 cut(s)	73, 186
AleI	CACNNNNGTG	1 cut(s)	75
AluBI	AGCT	7 cut(s)	269, 367, 1189, 1268, 1280, 1315, 1530
AluI	AGCT	7 cut(s)	269, 367, 1189, 1268, 1280, 1315, 1530
Alw26I	GTCTC	2 cut(s)	567, 1304
AlwI	GGATC	4 cut(s)	185, 198, 1122, 1518
AoxI	GGCC	2 cut(s)	3, 1147
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	3 cut(s)	749, 895, 1273
ArsI	GACNNNNNNTTYG	2 cut(s)	605, 637
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	293
AsuNHI	GCTAGC	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	190
BanII	GRGCYC	2 cut(s)	449, 1470
BauI	CACGAG	1 cut(s)	1455
BbvCI	CCTCAGC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	7 cut(s)	143, 326, 527, 701, 977, 1165, 1322
BciT130I	CCWGG	2 cut(s)	75, 188
BcoDI	GTCTC	2 cut(s)	567, 1304
BcuI	ACTAGT	1 cut(s)	974
BfaI	CTAG	3 cut(s)	374, 827, 975
BfmI	CTRYAG	1 cut(s)	1393
BfrI	CTTAAG	1 cut(s)	1258
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
BmcAI	AGTACT	1 cut(s)	757
Bme1390I	CCNGG	2 cut(s)	75, 188
Bme18I	GGWCC	1 cut(s)	106
BmeRI	GACNNNNNGTC	1 cut(s)	388
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	3 cut(s)	192, 448, 1428
BmrFI	CCNGG	2 cut(s)	75, 188
BmsI	GCATC	2 cut(s)	853, 1394
BmtI	GCTAGC	1 cut(s)	377
Bpu10I	CCTNAGC	1 cut(s)	368
BpuEI	CTTGAG	2 cut(s)	1229, 1301
BsaBI	GATNNNNATC	1 cut(s)	1161
BsaJI	CCNNGG	1 cut(s)	73
BsaWI	WCCGGW	1 cut(s)	140
Bse1I	ACTGG	2 cut(s)	135, 1485
Bse3DI	GCAATG	3 cut(s)	491, 808, 923
Bse8I	GATNNNNATC	1 cut(s)	1161
BseBI	CCWGG	2 cut(s)	75, 188
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	5 cut(s)	37, 337, 693, 749, 1409
BseJI	GATNNNNATC	1 cut(s)	1161
BseMI	GCAATG	3 cut(s)	491, 808, 923
BseMII	CTCAG	3 cut(s)	359, 979, 1511
BseNI	ACTGG	2 cut(s)	135, 1485
BseRI	GAGGAG	2 cut(s)	201, 1278
BseXI	GCAGC	1 cut(s)	278
BseYI	CCCAGC	1 cut(s)	336
BsgI	GTGCAG	1 cut(s)	1079
BshFI	GGCC	2 cut(s)	5, 1149
BsiSI	CCGG	2 cut(s)	141, 876
BslFI	GGGAC	1 cut(s)	1065
BsmAI	GTCTC	2 cut(s)	567, 1304
BsmFI	GGGAC	1 cut(s)	1065
BsnI	GGCC	2 cut(s)	5, 1149
Bsp1286I	GDGCHC	2 cut(s)	449, 1470
Bsp143I	GATC	8 cut(s)	190, 281, 887, 1127, 1287, 1389, 1500, 1523
BspACI	CCGC	1 cut(s)	1193
BspANI	GGCC	2 cut(s)	5, 1149
BspCNI	CTCAG	3 cut(s)	360, 978, 1512
BspHI	TCATGA	2 cut(s)	145, 1165
BspLI	GGNNCC	3 cut(s)	192, 448, 1428
BspOI	GCTAGC	1 cut(s)	377
BspPI	GGATC	4 cut(s)	185, 198, 1122, 1518
BspTI	CTTAAG	1 cut(s)	1258
BsrDI	GCAATG	3 cut(s)	491, 808, 923
BsrI	ACTGG	2 cut(s)	135, 1485
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	8 cut(s)	190, 281, 887, 1127, 1287, 1389, 1500, 1523
BssSI	CACGAG	1 cut(s)	1455
Bst2BI	CACGAG	1 cut(s)	1455
Bst2UI	CCWGG	2 cut(s)	75, 188
Bst4CI	ACNGT	3 cut(s)	531, 711, 1397
Bst6I	CTCTTC	1 cut(s)	1307
BstAFI	CTTAAG	1 cut(s)	1258
BstC8I	GCNNGC	5 cut(s)	375, 658, 727, 881, 1191
BstDEI	CTNAG	4 cut(s)	356, 368, 965, 1520
BstF5I	GGATG	5 cut(s)	37, 337, 693, 749, 1409
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	8 cut(s)	193, 284, 890, 1130, 1290, 1392, 1503, 1526
BstMAI	GTCTC	2 cut(s)	567, 1304
BstMBI	GATC	8 cut(s)	190, 281, 887, 1127, 1287, 1389, 1500, 1523
BstMWI	GCNNNNNNNGC	1 cut(s)	1381
BstNI	CCWGG	2 cut(s)	75, 188
BstNSI	RCATGY	3 cut(s)	725, 883, 1058
BstSCI	CCNGG	2 cut(s)	73, 186
BstSFI	CTRYAG	1 cut(s)	1393
BstV1I	GCAGC	1 cut(s)	278
BstX2I	RGATCY	2 cut(s)	190, 1523
BstXI	CCANNNNNNTGG	1 cut(s)	668
BstYI	RGATCY	2 cut(s)	190, 1523
BsuRI	GGCC	2 cut(s)	5, 1149
BtsCI	GGATG	5 cut(s)	37, 337, 693, 749, 1409
BtsI	GCAGTG	1 cut(s)	1468
BtsIMutI	CAGTG	4 cut(s)	716, 973, 1468, 1478
Cac8I	GCNNGC	5 cut(s)	375, 658, 727, 881, 1191
CciI	TCATGA	2 cut(s)	145, 1165
CfoI	GCGC	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	106
Csp6I	GTAC	5 cut(s)	80, 527, 646, 756, 978
CviQI	GTAC	5 cut(s)	80, 527, 646, 756, 978
DdeI	CTNAG	4 cut(s)	356, 368, 965, 1520
DpnI	GATC	8 cut(s)	192, 283, 889, 1129, 1289, 1391, 1502, 1525
DpnII	GATC	8 cut(s)	190, 281, 887, 1127, 1287, 1389, 1500, 1523
DriI	GACNNNNNGTC	1 cut(s)	388
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	1307
Eam1105I	GACNNNNNGTC	1 cut(s)	388
EarI	CTCTTC	1 cut(s)	1307
Eco24I	GRGCYC	2 cut(s)	449, 1470
Eco47I	GGWCC	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	749
EcoRII	CCWGG	2 cut(s)	73, 186
EcoT38I	GRGCYC	2 cut(s)	449, 1470
FaqI	GGGAC	1 cut(s)	1065
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	5 cut(s)	44, 344, 680, 756, 1416
FriOI	GRGCYC	2 cut(s)	449, 1470
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	3 cut(s)	374, 827, 975
FspI	TGCGCA	1 cut(s)	94
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	1 cut(s)	267
GsaI	CCCAGC	1 cut(s)	340
HaeIII	GGCC	2 cut(s)	5, 1149
HapII	CCGG	2 cut(s)	141, 876
HhaI	GCGC	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HindIII	AAGCTT	1 cut(s)	1187
HinfI	GANTC	3 cut(s)	580, 1162, 1249
HpaII	CCGG	2 cut(s)	141, 876
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	2 cut(s)	80, 514
Hpy188I	TCNGA	4 cut(s)	52, 311, 1127, 1156
Hpy188III	TCNNGA	6 cut(s)	146, 860, 1166, 1318, 1418, 1535
Hpy8I	GTNNAC	2 cut(s)	80, 514
Hpy99I	CGWCG	1 cut(s)	605
HpyAV	CCTTC	1 cut(s)	360
HpyCH4III	ACNGT	3 cut(s)	531, 711, 1397
HpyCH4IV	ACGT	2 cut(s)	470, 996
HpyCH4V	TGCA	9 cut(s)	416, 491, 496, 729, 883, 916, 1060, 1072, 1296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1381
HpyF3I	CTNAG	4 cut(s)	356, 368, 965, 1520
HpySE526I	ACGT	2 cut(s)	470, 996
HspAI	GCGC	1 cut(s)	93
Kzo9I	GATC	8 cut(s)	190, 281, 887, 1127, 1287, 1389, 1500, 1523
LmnI	GCTCC	5 cut(s)	214, 452, 671, 1265, 1426
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	2 cut(s)	853, 1394
MaeI	CTAG	3 cut(s)	374, 827, 975
MaeII	ACGT	2 cut(s)	470, 996
MaeIII	GTNAC	2 cut(s)	299, 1450
MalI	GATC	8 cut(s)	192, 283, 889, 1129, 1289, 1391, 1502, 1525
MboI	GATC	8 cut(s)	190, 281, 887, 1127, 1287, 1389, 1500, 1523
MboII	GAAGA	9 cut(s)	269, 271, 389, 472, 494, 1117, 1226, 1294, 1438
MflI	RGATCY	2 cut(s)	190, 1523
MhlI	GDGCHC	2 cut(s)	449, 1470
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	4 cut(s)	39, 225, 474, 1123
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	9 cut(s)	327, 422, 534, 546, 1136, 1259, 1335, 1497, 1541
MslI	CAYNNNNRTG	1 cut(s)	75
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	1530
MspCI	CTTAAG	1 cut(s)	1258
MspI	CCGG	2 cut(s)	141, 876
MspR9I	CCNGG	2 cut(s)	75, 188
MvaI	CCWGG	2 cut(s)	75, 188
MwoI	GCNNNNNNNGC	1 cut(s)	1381
NdeII	GATC	8 cut(s)	190, 281, 887, 1127, 1287, 1389, 1500, 1523
NheI	GCTAGC	1 cut(s)	373
NlaIV	GGNNCC	3 cut(s)	192, 448, 1428
NmuCI	GTSAC	2 cut(s)	299, 1450
NsbI	TGCGCA	1 cut(s)	94
NspI	RCATGY	3 cut(s)	725, 883, 1058
OliI	CACNNNNGTG	1 cut(s)	75
PaeI	GCATGC	1 cut(s)	883
PagI	TCATGA	2 cut(s)	145, 1165
PciI	ACATGT	1 cut(s)	1054
PcsI	WCGNNNNNNNCGW	1 cut(s)	849
PfeI	GAWTC	3 cut(s)	580, 1162, 1249
PfoI	TCCNGGA	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	268
PscI	ACATGT	1 cut(s)	1054
Psp6I	CCWGG	2 cut(s)	73, 186
PspFI	CCCAGC	1 cut(s)	336
PspGI	CCWGG	2 cut(s)	73, 186
PspN4I	GGNNCC	3 cut(s)	192, 448, 1428
PspPI	GGNCC	1 cut(s)	106
PsuI	RGATCY	2 cut(s)	190, 1523
PvuII	CAGCTG	1 cut(s)	1530
RsaI	GTAC	5 cut(s)	81, 528, 647, 757, 979
RsaNI	GTAC	5 cut(s)	80, 527, 646, 756, 978
RseI	CAYNNNNRTG	1 cut(s)	75
SaqAI	TTAA	9 cut(s)	327, 422, 534, 546, 1136, 1259, 1335, 1497, 1541
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	8 cut(s)	190, 281, 887, 1127, 1287, 1389, 1500, 1523
Sau96I	GGNCC	1 cut(s)	106
ScaI	AGTACT	1 cut(s)	757
ScrFI	CCNGG	2 cut(s)	75, 188
SduI	GDGCHC	2 cut(s)	449, 1470
SfaNI	GCATC	2 cut(s)	853, 1394
SfcI	CTRYAG	1 cut(s)	1393
SinI	GGWCC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	3 cut(s)	1208, 1258, 1316
SmoI	CTYRAG	3 cut(s)	1208, 1258, 1316
SpeI	ACTAGT	1 cut(s)	974
SphI	GCATGC	1 cut(s)	883
SsiI	CCGC	1 cut(s)	1193
SspI	AATATT	1 cut(s)	156
SspMI	CTAG	3 cut(s)	374, 827, 975
StyD4I	CCNGG	2 cut(s)	73, 186
TaaI	ACNGT	3 cut(s)	531, 711, 1397
TaiI	ACGT	2 cut(s)	473, 999
TaqI	TCGA	7 cut(s)	280, 623, 843, 1016, 1247, 1326, 1417
TatI	WGTACW	3 cut(s)	526, 755, 977
TfiI	GAWTC	3 cut(s)	580, 1162, 1249
Tru1I	TTAA	9 cut(s)	327, 422, 534, 546, 1136, 1259, 1335, 1497, 1541
Tru9I	TTAA	9 cut(s)	327, 422, 534, 546, 1136, 1259, 1335, 1497, 1541
TscAI	CASTG	4 cut(s)	716, 973, 1468, 1485
TseFI	GTSAC	2 cut(s)	299, 1450
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	2 cut(s)	299, 1450
TspDTI	ATGAA	5 cut(s)	552, 750, 1124, 1294, 1487
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	4 cut(s)	716, 973, 1468, 1485
Vha464I	CTTAAG	1 cut(s)	1258
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	3 cut(s)	749, 895, 1273
XceI	RCATGY	3 cut(s)	725, 883, 1058
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1477
XspI	CTAG	3 cut(s)	374, 827, 975
ZrmI	AGTACT	1 cut(s)	757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.