Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003480.1

Orthogroup ID

OG0007849

Physical Location & Seq

Genomic Coordinates Reverse (-)

81771 .. 83422

Gene Structure 1652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003480.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgactttgcagggaggggatttgagatattgccaaaagtgttctcactataagccagctcgtgcacatcattgtcgtgtatgcaagagatgcgttttacgaatggaccatcattgcatatggattaataattgcgtcggccatgcaaactataaggtcttctttgtgttcgttgtgtatgctgttatagcatgcctatattccctggtgttgctattgggtagtctggctaatgattttgaaaaggatgaggagcaaagtgcagactcttttacaactgtatatatcatttctgggctattgctatttcccttgtgtgtagcactgagtgttctattaggttggcatatctacctcattttgcaaaacaagaccacaattgagtaccatgaaggggtaagagctatgtggcttgcagagaaaggaggacaaatctattcacatccatatgatcttggtacctatcaaaatttgtcaatggtactgggtccaaatatctttagttggttactccccacatcaggacatattggatcaggacttcgctttcgtacagcctacgattacccttccagtggttcaacgtcaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

197

Amino Acids

22.29

Weight (kDa)

8.34

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09320
fragaria_vesca	FvH4_6g13410 FvH4_6g13410 FvH4_6g13410 FvH4_6g13410
malus_domestica	MD04G1131400.v1.1 MD12G1144500.v1.1
prunus_persica	Prupe.6G257900_v2.0.a1 Prupe.6G257900_v2.0.a1 Prupe.6G257900_v2.0.a1 Prupe.6G257900_v2.0.a1
pyrus_communis	pycom12g13900
rosa_chinensis	RchiOBHm_Chr3g0466281
rosa_laevigata	RLG00000024590
rosa_multiflora	Rmu_co8331013.1_g000001 Rmu_sc0000350.1_g000020 Rmu_sc0003480.1_g000019
rosa_roxburghii	Rroxscaffold_6G00414650
rosa_rugosa	Rorug03G0080700 Rorug03G0080800
rosa_samantha	Rh3AG127000 Rh3BG148300 Rh3DG149000
rosa_wichuraiana	Rw3G011990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	458
AccB1I	GGYRCC	1 cut(s)	458
AclWI	GGATC	1 cut(s)	541
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	469
AdeI	CACNNNGTG	1 cut(s)	329
AfaI	GTAC	4 cut(s)	386, 460, 483, 553
AfiI	CCNNNNNNNGG	3 cut(s)	394, 521, 575
AgsI	TTSAA	2 cut(s)	242, 582
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	2 cut(s)	59, 404
AluI	AGCT	2 cut(s)	59, 404
Alw21I	GWGCWC	1 cut(s)	67
Alw44I	GTGCAC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	541
AoxI	GGCC	1 cut(s)	139
ApaLI	GTGCAC	1 cut(s)	63
ApoI	RAATTY	1 cut(s)	469
ArsI	GACNNNNNNTTYG	2 cut(s)	531, 563
AseI	ATTAAT	1 cut(s)	126
Asp718I	GGTACC	1 cut(s)	458
AspS9I	GGNCC	2 cut(s)	106, 488
AvaII	GGWCC	2 cut(s)	106, 488
BaeGI	GKGCMC	1 cut(s)	67
BanI	GGYRCC	1 cut(s)	458
BauI	CACGAG	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	67
BccI	CCATC	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	206
Bme18I	GGWCC	2 cut(s)	106, 488
BmgT120I	GGNCC	2 cut(s)	106, 488
BmiI	GGNNCC	2 cut(s)	460, 489
BmrFI	CCNGG	1 cut(s)	206
BmrI	ACTGGG	1 cut(s)	494
BmsI	GCATC	1 cut(s)	80
BmuI	ACTGGG	1 cut(s)	494
BpiI	GAAGAC	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	3 cut(s)	394, 521, 575
Bse1I	ACTGG	2 cut(s)	489, 573
Bse3DI	GCAATG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	253, 442
BseLI	CCNNNNNNNGG	3 cut(s)	394, 521, 575
BseMI	GCAATG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	317
BseNI	ACTGG	2 cut(s)	489, 573
BseRI	GAGGAG	1 cut(s)	266
BseSI	GKGCMC	1 cut(s)	67
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	1 cut(s)	141
BshNI	GGYRCC	1 cut(s)	458
BsiHKAI	GWGCWC	1 cut(s)	67
BslI	CCNNNNNNNGG	3 cut(s)	394, 521, 575
BsnI	GGCC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	2 cut(s)	451, 533
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	318
BspLI	GGNNCC	2 cut(s)	460, 489
BspPI	GGATC	1 cut(s)	541
BspT107I	GGYRCC	1 cut(s)	458
BsrDI	GCAATG	1 cut(s)	112
BsrI	ACTGG	2 cut(s)	489, 573
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	2 cut(s)	451, 533
BssSI	CACGAG	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	280
BstAPI	GCANNNNNTGC	1 cut(s)	90
BstC8I	GCNNGC	3 cut(s)	57, 193, 414
BstDEI	CTNAG	1 cut(s)	326
BstF5I	GGATG	2 cut(s)	253, 442
BstKTI	GATC	2 cut(s)	454, 536
BstMBI	GATC	2 cut(s)	451, 533
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 188
BstNI	CCWGG	1 cut(s)	206
BstNSI	RCATGY	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	204
BstSLI	GKGCMC	1 cut(s)	67
BstV2I	GAAGAC	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	253, 442
BtsIMutI	CAGTG	2 cut(s)	323, 580
Cac8I	GCNNGC	3 cut(s)	57, 193, 414
Cfr13I	GGNCC	2 cut(s)	106, 488
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	4 cut(s)	385, 459, 482, 552
CviAII	CATG	3 cut(s)	143, 192, 389
CviJI	RGCY	8 cut(s)	55, 59, 141, 230, 298, 404, 412, 557
CviKI_1	RGCY	8 cut(s)	55, 59, 141, 230, 298, 404, 412, 557
CviQI	GTAC	4 cut(s)	385, 459, 482, 552
DdeI	CTNAG	1 cut(s)	326
DpnI	GATC	2 cut(s)	453, 535
DpnII	GATC	2 cut(s)	451, 533
DraIII	CACNNNGTG	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	106, 488
EcoRII	CCWGG	1 cut(s)	204
FaeI	CATG	3 cut(s)	146, 195, 392
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FatI	CATG	3 cut(s)	142, 191, 388
FauNDI	CATATG	2 cut(s)	119, 448
FokI	GGATG	2 cut(s)	260, 429
HaeIII	GGCC	1 cut(s)	141
HgaI	GACGC	1 cut(s)	124
Hin1II	CATG	3 cut(s)	146, 195, 392
HinfI	GANTC	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188III	TCNNGA	2 cut(s)	522, 537
Hpy8I	GTNNAC	1 cut(s)	65
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	386, 579
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	584
HpyCH4V	TGCA	8 cut(s)	10, 65, 84, 117, 146, 263, 364, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 188
HpyF3I	CTNAG	1 cut(s)	326
HpySE526I	ACGT	1 cut(s)	584
Hsp92II	CATG	3 cut(s)	146, 195, 392
KpnI	GGTACC	1 cut(s)	462
Kzo9I	GATC	2 cut(s)	451, 533
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	9 cut(s)	69, 191, 212, 218, 279, 470, 507, 522, 586
LweI	GCATC	1 cut(s)	80
MaeII	ACGT	1 cut(s)	584
MaeIII	GTNAC	1 cut(s)	507
MalI	GATC	2 cut(s)	453, 535
MboI	GATC	2 cut(s)	451, 533
MboII	GAAGA	1 cut(s)	151
MfeI	CAATTG	1 cut(s)	378
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	3 cut(s)	130, 378, 469
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	4 cut(s)	8, 244, 365, 419
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	2 cut(s)	75, 447
MspR9I	CCNGG	1 cut(s)	206
MunI	CAATTG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	2 cut(s)	90, 188
NdeI	CATATG	2 cut(s)	119, 448
NdeII	GATC	2 cut(s)	451, 533
NlaIII	CATG	3 cut(s)	146, 195, 392
NlaIV	GGNNCC	2 cut(s)	460, 489
NspI	RCATGY	1 cut(s)	195
PaeI	GCATGC	1 cut(s)	195
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PshBI	ATTAAT	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	460, 489
PspPI	GGNCC	2 cut(s)	106, 488
RsaI	GTAC	4 cut(s)	386, 460, 483, 553
RsaNI	GTAC	4 cut(s)	385, 459, 482, 552
RseI	CAYNNNNRTG	2 cut(s)	75, 447
SaqAI	TTAA	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	451, 533
Sau96I	GGNCC	2 cut(s)	106, 488
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	7 cut(s)	61, 159, 343, 357, 406, 464, 587
SfaNI	GCATC	1 cut(s)	80
SinI	GGWCC	2 cut(s)	106, 488
SmiMI	CAYNNNNRTG	2 cut(s)	75, 447
SphI	GCATGC	1 cut(s)	195
Sse9I	AATT	3 cut(s)	130, 378, 469
StyD4I	CCNGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	587
TasI	AATT	3 cut(s)	130, 378, 469
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	2 cut(s)	330, 580
TspDTI	ATGAA	1 cut(s)	405
TspRI	CASTG	2 cut(s)	330, 580
VneI	GTGCAC	1 cut(s)	63
VpaK11BI	GGWCC	2 cut(s)	106, 488
VspI	ATTAAT	1 cut(s)	126
XapI	RAATTY	1 cut(s)	469
XceI	RCATGY	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.