Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010831

Physical Location & Seq

Genomic Coordinates Reverse (-)

2974802 .. 2976318

Gene Structure 1517 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G09700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTTGCAGCGATAATTGCAGGCGCTGCTGTTGCTGCTGCTGCTTATGCTGGTAAATATGGAATAGAGGCATGGCAAGCGTTTAAGCTGAGACCAGTTAGGCCTAGAATGCGAAAATTCTATGAAGGTGGTTTCCAAGCTACTATGAATCGAAGAGAAGCTGCTCTAATTCTCGGTGTTAGGGAGAGTGTAGCGGCAGAGAAGGTGAAGGAAGCTCACCGTAGAGTGATGGTGGCTAATCATCCAGATGCAGGAGGAAGCCATTACCTTGCGTCTAAGATCAATGAAGCCAAAGACATGATGCTTGGAAAAACCAAGAACTCTGGTTCTGCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.11

Weight (kDa)

10.19

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09700 AT5G03030 AT5G03030
fragaria_vesca	FvH4_6g15420
malus_domestica	MD04G1103700.v1.1 MD12G1123600.v1.1
prunus_persica	Prupe.6G240700_v2.0.a1
pyrus_communis	pycom04g09890 pycom12g12230
rosa_chinensis	RchiOBHm_Chr3g0468901 RchiOBHm_Chr6g0264141
rosa_laevigata	RLG00000024402
rosa_multiflora	Rmu_sc0001639.1_g000012 Rmu_sc0003298.1_g000003
rosa_roxburghii	Rroxscaffold_6G00412470
rosa_rugosa	Rorug03G0097500
rosa_samantha	Rh3AG147100 Rh3BG169600 Rh3DG205500
rosa_wichuraiana	Rw3G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	251
AluBI	AGCT	4 cut(s)	88, 140, 161, 215
AluI	AGCT	4 cut(s)	88, 140, 161, 215
Alw26I	GTCTC	1 cut(s)	85
AlwNI	CAGNNNCTG	1 cut(s)	26
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	6 cut(s)	8, 26, 35, 38, 41, 161
ApoI	RAATTY	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	209, 217
BbvI	GCAGC	6 cut(s)	13, 20, 22, 25, 28, 148
BccI	CCATC	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	105
BfoI	RGCGCY	1 cut(s)	27
BisI	GCNGC	7 cut(s)	9, 27, 36, 39, 42, 162, 195
BlsI	GCNGC	7 cut(s)	10, 28, 37, 40, 43, 163, 196
BmsI	GCATC	2 cut(s)	238, 291
BsaI	GGTCTC	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	95
BseXI	GCAGC	6 cut(s)	13, 20, 22, 25, 28, 148
BshFI	GGCC	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	85
BsmI	GAATGC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	103
Bso31I	GGTCTC	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	279
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	95
BssMI	GATC	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	148
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	22, 78
BstDEI	CTNAG	2 cut(s)	89, 276
BstF5I	GGATG	1 cut(s)	241
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	1 cut(s)	282
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	8 cut(s)	17, 26, 32, 35, 41, 47, 77, 109
BstV1I	GCAGC	6 cut(s)	13, 20, 22, 25, 28, 148
BsuRI	GGCC	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	241
Cac8I	GCNNGC	2 cut(s)	22, 78
CaiI	CAGNNNCTG	1 cut(s)	26
CfoI	GCGC	1 cut(s)	26
CseI	GACGC	1 cut(s)	261
CviAII	CATG	2 cut(s)	72, 298
CviJI	RGCY	8 cut(s)	88, 103, 140, 161, 215, 236, 261, 290
CviKI_1	RGCY	8 cut(s)	88, 103, 140, 161, 215, 236, 261, 290
DdeI	CTNAG	2 cut(s)	89, 276
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Eco147I	AGGCCT	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	85
FaeI	CATG	2 cut(s)	75, 301
FaiI	YATR	6 cut(s)	48, 60, 73, 123, 146, 299
FatI	CATG	2 cut(s)	71, 297
Fnu4HI	GCNGC	7 cut(s)	9, 27, 36, 39, 42, 162, 195
FokI	GGATG	1 cut(s)	228
Fsp4HI	GCNGC	7 cut(s)	9, 27, 36, 39, 42, 162, 195
FspBI	CTAG	1 cut(s)	105
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	7 cut(s)	9, 27, 36, 39, 42, 162, 195
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	103
HgaI	GACGC	1 cut(s)	261
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	75, 301
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	1 cut(s)	148
HphI	GGTGA	2 cut(s)	209, 217
Hpy188III	TCNNGA	1 cut(s)	245
HpyAV	CCTTC	3 cut(s)	119, 196, 202
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4V	TGCA	3 cut(s)	8, 20, 251
HpyF10VI	GCNNNNNNNGC	8 cut(s)	17, 26, 32, 35, 41, 47, 77, 109
HpyF3I	CTNAG	2 cut(s)	89, 276
Hsp92II	CATG	2 cut(s)	75, 301
HspAI	GCGC	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	279
LpnPI	CCDG	6 cut(s)	6, 36, 108, 237, 258, 309
Lsp1109I	GCAGC	6 cut(s)	13, 20, 22, 25, 28, 148
LweI	GCATC	2 cut(s)	238, 291
MaeI	CTAG	1 cut(s)	105
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MboII	GAAGA	1 cut(s)	165
MluCI	AATT	3 cut(s)	15, 116, 168
MnlI	CCTC	2 cut(s)	61, 248
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	114
MwoI	GCNNNNNNNGC	8 cut(s)	17, 26, 32, 35, 41, 47, 77, 109
NdeII	GATC	1 cut(s)	279
NlaIII	CATG	2 cut(s)	75, 301
PceI	AGGCCT	1 cut(s)	103
PctI	GAATGC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	148
PkrI	GCNGC	7 cut(s)	10, 28, 37, 40, 43, 163, 196
PstNI	CAGNNNCTG	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	7 cut(s)	9, 27, 36, 39, 42, 162, 195
Sau3AI	GATC	1 cut(s)	279
SetI	ASST	7 cut(s)	90, 130, 142, 163, 207, 217, 270
SfaNI	GCATC	2 cut(s)	238, 291
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	3 cut(s)	15, 116, 168
SseBI	AGGCCT	1 cut(s)	103
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	103
TaaI	ACNGT	1 cut(s)	221
TaqI	TCGA	1 cut(s)	151
TasI	AATT	3 cut(s)	15, 116, 168
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TseI	GCWGC	6 cut(s)	8, 26, 35, 38, 41, 161
TspDTI	ATGAA	3 cut(s)	138, 161, 300
XapI	RAATTY	1 cut(s)	116
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.