Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010831

Physical Location & Seq

Genomic Coordinates Forward (+)

18746829 .. 18748684

Gene Structure 1856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG205500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTAACTGCGTTGATAGGAGGAGCGGCTGTTGCTGCTGCTGCTTATGCTGGTAGATATGGCATTCAGGCTTGGCAAGCATTCAAAGCAAGACCGCCTACAGCTCGACTGCGTAAATTTTATGAAGGTGGTTTTCAACCTACTATGACCCGGAGGGAAGCAGCTCTAATACTTGGAGTCAGGGAGAGTGTTCCCATAACCAAGGTCAGGGAAGCCCATAGGAGGGTGATGGTTGCTAACCATCCAGATGCAGGAGGTAGCCATTACCTTGCATCTAAAATCAATGAAGCCAAAGAAACATTGCTTGGAAAAATCAGGGGCGGCGGCTCTGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002082 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006140 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009892 GO:0009987 GO:0009991 GO:0010563 GO:0016020 GO:0019216 GO:0019219 GO:0019220 GO:0019222 GO:0019866 GO:0031090 GO:0031323 GO:0031324 GO:0031333 GO:0031667 GO:0031668 GO:0031669 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0042325 GO:0042326 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043457 GO:0043467 GO:0044087 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045934 GO:0045936 GO:0045980 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051174 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0071496 GO:0080090 GO:0090324 GO:1900542 GO:1900543 GO:1901856 GO:1902956 GO:1902957 GO:1903578 GO:1903579 GO:1905446 GO:1905447

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.01

Weight (kDa)

10.73

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pam16	PF03656	5 - 101	7.8e-06	Pam16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09700 AT5G03030 AT5G03030
fragaria_vesca	FvH4_6g15420
malus_domestica	MD04G1103700.v1.1 MD12G1123600.v1.1
prunus_persica	Prupe.6G240700_v2.0.a1
pyrus_communis	pycom04g09890 pycom12g12230
rosa_chinensis	RchiOBHm_Chr3g0468901 RchiOBHm_Chr6g0264141
rosa_laevigata	RLG00000024402
rosa_multiflora	Rmu_sc0001639.1_g000012 Rmu_sc0003298.1_g000003
rosa_roxburghii	Rroxscaffold_6G00412470
rosa_rugosa	Rorug03G0097500
rosa_samantha	Rh3AG147100 Rh3BG169600 Rh3DG205500
rosa_wichuraiana	Rw3G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	26
AciI	CCGC	4 cut(s)	26, 95, 321, 324
AcsI	RAATTY	1 cut(s)	116
AfiI	CCNNNNNNNGG	4 cut(s)	207, 222, 223, 251
AgsI	TTSAA	2 cut(s)	85, 137
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	2 cut(s)	104, 164
AluI	AGCT	2 cut(s)	104, 164
ApeKI	GCWGC	4 cut(s)	35, 38, 41, 161
ApoI	RAATTY	1 cut(s)	116
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	238
BbvI	GCAGC	4 cut(s)	22, 25, 28, 173
BccI	CCATC	2 cut(s)	223, 249
BcnI	CCSGG	1 cut(s)	151
BfmI	CTRYAG	1 cut(s)	99
BisI	GCNGC	7 cut(s)	27, 36, 39, 42, 162, 322, 325
BlsI	GCNGC	7 cut(s)	28, 37, 40, 43, 163, 323, 326
Bme1390I	CCNGG	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	2 cut(s)	238, 281
BpuMI	CCSGG	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	201
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	4 cut(s)	207, 222, 223, 251
Bse3DI	GCAATG	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	4 cut(s)	207, 222, 223, 251
BseMI	GCAATG	1 cut(s)	299
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	4 cut(s)	22, 25, 28, 173
BsiSI	CCGG	1 cut(s)	151
BslI	CCNNNNNNNGG	4 cut(s)	207, 222, 223, 251
BsmI	GAATGC	2 cut(s)	63, 80
BspACI	CCGC	4 cut(s)	26, 95, 321, 324
BsrBI	CCGCTC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 35, 41, 47, 77, 86
BstSCI	CCNGG	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	4 cut(s)	22, 25, 28, 173
BtsCI	GGATG	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	78
CviJI	RGCY	8 cut(s)	29, 71, 104, 164, 215, 261, 290, 327
CviKI_1	RGCY	8 cut(s)	29, 71, 104, 164, 215, 261, 290, 327
Eco130I	CCWWGG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaiI	YATR	6 cut(s)	48, 60, 123, 146, 197, 219
Fnu4HI	GCNGC	7 cut(s)	27, 36, 39, 42, 162, 322, 325
FokI	GGATG	1 cut(s)	228
Fsp4HI	GCNGC	7 cut(s)	27, 36, 39, 42, 162, 322, 325
GluI	GCNGC	7 cut(s)	27, 36, 39, 42, 162, 322, 325
HapII	CCGG	1 cut(s)	151
HinfI	GANTC	1 cut(s)	177
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	119
HpyCH4V	TGCA	3 cut(s)	251, 272, 332
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 35, 41, 47, 77, 86
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	8 cut(s)	36, 53, 164, 166, 193, 237, 258, 301
Lsp1109I	GCAGC	4 cut(s)	22, 25, 28, 173
LweI	GCATC	2 cut(s)	238, 281
MaeIII	GTNAC	1 cut(s)	4
MbiI	CCGCTC	1 cut(s)	26
MluCI	AATT	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	186
MnlI	CCTC	4 cut(s)	14, 147, 216, 248
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	151
Mva1269I	GAATGC	2 cut(s)	63, 80
MwoI	GCNNNNNNNGC	6 cut(s)	32, 35, 41, 47, 77, 86
NciI	CCSGG	1 cut(s)	151
PctI	GAATGC	2 cut(s)	63, 80
PkrI	GCNGC	7 cut(s)	28, 37, 40, 43, 163, 323, 326
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
RseI	CAYNNNNRTG	1 cut(s)	246
SatI	GCNGC	7 cut(s)	27, 36, 39, 42, 162, 322, 325
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	1 cut(s)	151
SetI	ASST	7 cut(s)	106, 130, 142, 166, 207, 259, 270
SfaNI	GCATC	2 cut(s)	238, 281
SfcI	CTRYAG	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	1 cut(s)	116
SsiI	CCGC	4 cut(s)	26, 95, 321, 324
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	201
TaqI	TCGA	1 cut(s)	106
TasI	AATT	1 cut(s)	116
TauI	GCSGC	3 cut(s)	29, 324, 327
TseI	GCWGC	4 cut(s)	35, 38, 41, 161
TspDTI	ATGAA	2 cut(s)	138, 300
XapI	RAATTY	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.