Rroxscaffold_6G00412470

Mitochondrial import inner membrane translocase subunit

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
35027128 .. 35030229
3102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00412470.1

Sequence Viewer

Length: 375 bp
ATGACCGGAATCCGGAATCCGGCTATTATTGCTCCCCCGGTAACTGCGTTGATAGGAGGAGCGGCTGTTGCTGCTGCTGCTTATGCTGGTAGATATGGCATTCAGGCTTGGCAAGCATTCAAAGCAAGACCGCCTACAGCTCGACTGCGTAAATTTTATGAAGGTGGTTTTCAACCTACTATGACCCGGAGGGAAGCAGCTCTAATACTTGGAGTCAGGGAGAGTGTTCCCATAACCAAGGTCAGGGAAGCCCATAGGAGGGTGATGGTTGCTAACCATCCAGATGCAGGAGGTAGCCATTACCTTGCATCTAAAATCAATGAAGCCAAAGATACATTGCTGGGAAAAATCAGGGGCAGCGGCTCTGCATTTTGA

Protein Analysis

124

Amino Acids

13.23

Weight (kDa)

10.96

Isoelectric Point (pI)

34.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0010831)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 62
AccIII TCCGGA 1 cut(s) 12
AciI CCGC 3 cut(s) 62, 131, 360
AcsI RAATTY 1 cut(s) 152
AfiI CCNNNNNNNGG 6 cut(s) 12, 19, 243, 258, 259, 287
AgsI TTSAA 2 cut(s) 121, 173
AluBI AGCT 2 cut(s) 140, 200
AluI AGCT 2 cut(s) 140, 200
Aor13HI TCCGGA 1 cut(s) 12
ApeKI GCWGC 5 cut(s) 71, 74, 77, 197, 357
ApoI RAATTY 1 cut(s) 152
AsuC2I CCSGG 2 cut(s) 38, 187
AsuHPI GGTGA 1 cut(s) 274
BbvI GCAGC 5 cut(s) 58, 61, 64, 209, 369
BccI CCATC 2 cut(s) 259, 285
BcnI CCSGG 2 cut(s) 38, 187
BfmI CTRYAG 1 cut(s) 135
BisI GCNGC 7 cut(s) 63, 72, 75, 78, 198, 358, 361
BlsI GCNGC 7 cut(s) 64, 73, 76, 79, 199, 359, 362
Bme1390I CCNGG 2 cut(s) 38, 187
BmrFI CCNGG 2 cut(s) 38, 187
BmsI GCATC 2 cut(s) 274, 317
BpuMI CCSGG 2 cut(s) 38, 187
BsaJI CCNNGG 2 cut(s) 36, 237
BsaWI WCCGGW 2 cut(s) 5, 12
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 6 cut(s) 12, 19, 243, 258, 259, 287
Bse3DI GCAATG 1 cut(s) 335
BseAI TCCGGA 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 36, 237
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 6 cut(s) 12, 19, 243, 258, 259, 287
BseMI GCAATG 1 cut(s) 335
BseRI GAGGAG 1 cut(s) 72
BseXI GCAGC 5 cut(s) 58, 61, 64, 209, 369
BseYI CCCAGC 1 cut(s) 340
BsiSI CCGG 5 cut(s) 6, 13, 20, 38, 187
BslI CCNNNNNNNGG 6 cut(s) 12, 19, 243, 258, 259, 287
BsmI GAATGC 2 cut(s) 99, 116
Bsp13I TCCGGA 1 cut(s) 12
BspACI CCGC 3 cut(s) 62, 131, 360
BspEI TCCGGA 1 cut(s) 12
BsrBI CCGCTC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 335
BssECI CCNNGG 2 cut(s) 36, 237
BssT1I CCWWGG 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 114
BstF5I GGATG 1 cut(s) 277
BstMWI GCNNNNNNNGC 7 cut(s) 29, 68, 71, 77, 83, 113, 122
BstSCI CCNGG 2 cut(s) 36, 185
BstSFI CTRYAG 1 cut(s) 135
BstV1I GCAGC 5 cut(s) 58, 61, 64, 209, 369
BtsCI GGATG 1 cut(s) 277
Cac8I GCNNGC 1 cut(s) 114
CviJI RGCY 9 cut(s) 23, 65, 107, 140, 200, 251, 297, 326, 363
CviKI_1 RGCY 9 cut(s) 23, 65, 107, 140, 200, 251, 297, 326, 363
Eco130I CCWWGG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
FaiI YATR 6 cut(s) 84, 96, 159, 182, 233, 255
Fnu4HI GCNGC 7 cut(s) 63, 72, 75, 78, 198, 358, 361
FokI GGATG 1 cut(s) 264
Fsp4HI GCNGC 7 cut(s) 63, 72, 75, 78, 198, 358, 361
GluI GCNGC 7 cut(s) 63, 72, 75, 78, 198, 358, 361
GsaI CCCAGC 1 cut(s) 344
HapII CCGG 5 cut(s) 6, 13, 20, 38, 187
HinfI GANTC 3 cut(s) 9, 16, 213
HpaII CCGG 5 cut(s) 6, 13, 20, 38, 187
HphI GGTGA 1 cut(s) 274
Hpy188III TCNNGA 2 cut(s) 13, 281
HpyAV CCTTC 1 cut(s) 155
HpyCH4V TGCA 3 cut(s) 287, 308, 368
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 68, 71, 77, 83, 113, 122
Kpn2I TCCGGA 1 cut(s) 12
LmnI GCTCC 2 cut(s) 37, 59
Lsp1109I GCAGC 5 cut(s) 58, 61, 64, 209, 369
LweI GCATC 2 cut(s) 274, 317
MaeIII GTNAC 1 cut(s) 40
MbiI CCGCTC 1 cut(s) 62
MluCI AATT 1 cut(s) 152
MlyI GAGTC 1 cut(s) 222
MnlI CCTC 4 cut(s) 50, 183, 252, 284
MroI TCCGGA 1 cut(s) 12
MslI CAYNNNNRTG 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 360
MspI CCGG 5 cut(s) 6, 13, 20, 38, 187
MspR9I CCNGG 2 cut(s) 38, 187
Mva1269I GAATGC 2 cut(s) 99, 116
MwoI GCNNNNNNNGC 7 cut(s) 29, 68, 71, 77, 83, 113, 122
NciI CCSGG 2 cut(s) 38, 187
PctI GAATGC 2 cut(s) 99, 116
PfeI GAWTC 2 cut(s) 9, 16
PkrI GCNGC 7 cut(s) 64, 73, 76, 79, 199, 359, 362
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PspFI CCCAGC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 282
SatI GCNGC 7 cut(s) 63, 72, 75, 78, 198, 358, 361
SchI GAGTC 1 cut(s) 222
ScrFI CCNGG 2 cut(s) 38, 187
SetI ASST 7 cut(s) 142, 166, 178, 202, 243, 295, 306
SfaNI GCATC 2 cut(s) 274, 317
SfcI CTRYAG 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 282
Sse9I AATT 1 cut(s) 152
SsiI CCGC 3 cut(s) 62, 131, 360
StyD4I CCNGG 2 cut(s) 36, 185
StyI CCWWGG 1 cut(s) 237
TaqI TCGA 1 cut(s) 142
TasI AATT 1 cut(s) 152
TauI GCSGC 2 cut(s) 65, 363
TfiI GAWTC 2 cut(s) 9, 16
TseI GCWGC 5 cut(s) 71, 74, 77, 197, 357
TspDTI ATGAA 2 cut(s) 174, 336
XapI RAATTY 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.