AT5G03030

Mitochondrial import inner membrane translocase subunit

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
708318 .. 709734
1417 bp
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UTR
Exon/CDS
Intron
AT5G03030.2

Sequence Viewer

Length: 339 bp
ATGGCTACGCCAATGATTGCAGGTGCTGCTGTAGCTGCTGCTGCTGTTGCTGGTAGATATGGTATATTGGCTTGGCAAGCTTTCAAGGCAAGACCTCGTGTTCCTAGAATGCGCAGGTTTTATGAAGGTGGTTTCCAAAGTTCTATGACCCGCCGAGAAGCTGCTCTCATTCTTGGTGTTAGGGAGAGTGTTGTGGCAGATAAGGTGAAGGAAGCTCACCGGAGAGTGATGGTTGCAAATCACCCAGACGCTGGAGGCAGTCACTATCTTGCTTCTAAGATCAATGAAGCCAAAGATATGATGCTTGGAAAATCCAACAACAGCGGTTCTGCCTTTTGA

Protein Analysis

112

Amino Acids

12.06

Weight (kDa)

10.69

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010831)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 11
Acc16I TGCGCA 1 cut(s) 113
Acc36I ACCTGC 2 cut(s) 11, 105
AccB7I CCANNNNNTGG 1 cut(s) 251
AciI CCGC 2 cut(s) 151, 324
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 1 cut(s) 85
AluBI AGCT 4 cut(s) 35, 80, 161, 215
AluI AGCT 4 cut(s) 35, 80, 161, 215
AlwNI CAGNNNCTG 2 cut(s) 26, 251
ApeKI GCWGC 5 cut(s) 26, 35, 38, 41, 161
AspLEI GCGC 1 cut(s) 114
AsuHPI GGTGA 3 cut(s) 209, 217, 233
BauI CACGAG 1 cut(s) 96
BbvI GCAGC 5 cut(s) 13, 22, 25, 28, 148
BccI CCATC 1 cut(s) 223
BfaI CTAG 1 cut(s) 105
BfmI CTRYAG 1 cut(s) 30
BfuAI ACCTGC 2 cut(s) 11, 105
BisI GCNGC 5 cut(s) 27, 36, 39, 42, 162
BlsI GCNGC 5 cut(s) 28, 37, 40, 43, 163
BmsI GCATC 1 cut(s) 291
BpmI CTGGAG 1 cut(s) 273
BsaWI WCCGGW 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 251
BseLI CCNNNNNNNGG 1 cut(s) 251
BseXI GCAGC 5 cut(s) 13, 22, 25, 28, 148
BsiSI CCGG 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 251
BsmI GAATGC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 279
BspACI CCGC 2 cut(s) 151, 324
BspMI ACCTGC 2 cut(s) 11, 105
BssMI GATC 1 cut(s) 279
BssSI CACGAG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 96
BstAPI GCANNNNNTGC 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 276
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 1 cut(s) 282
BstMBI GATC 1 cut(s) 279
BstMWI GCNNNNNNNGC 7 cut(s) 26, 32, 35, 41, 47, 77, 86
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 5 cut(s) 13, 22, 25, 28, 148
BveI ACCTGC 2 cut(s) 11, 105
Cac8I GCNNGC 1 cut(s) 78
CaiI CAGNNNCTG 2 cut(s) 26, 251
CfoI GCGC 1 cut(s) 114
CseI GACGC 1 cut(s) 257
CviJI RGCY 7 cut(s) 5, 35, 71, 80, 161, 215, 290
CviKI_1 RGCY 7 cut(s) 5, 35, 71, 80, 161, 215, 290
DdeI CTNAG 1 cut(s) 276
DpnI GATC 1 cut(s) 281
DpnII GATC 1 cut(s) 279
FaiI YATR 5 cut(s) 60, 65, 123, 146, 299
FauI CCCGC 1 cut(s) 158
Fnu4HI GCNGC 5 cut(s) 27, 36, 39, 42, 162
Fsp4HI GCNGC 5 cut(s) 27, 36, 39, 42, 162
FspBI CTAG 1 cut(s) 105
FspI TGCGCA 1 cut(s) 113
GlaI GCGC 1 cut(s) 113
GluI GCNGC 5 cut(s) 27, 36, 39, 42, 162
GsuI CTGGAG 1 cut(s) 273
HapII CCGG 1 cut(s) 220
HgaI GACGC 1 cut(s) 257
HhaI GCGC 1 cut(s) 114
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 78
HpaII CCGG 1 cut(s) 220
HphI GGTGA 3 cut(s) 209, 217, 233
HpyAV CCTTC 2 cut(s) 119, 202
HpyCH4V TGCA 2 cut(s) 20, 236
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 32, 35, 41, 47, 77, 86
HpyF3I CTNAG 1 cut(s) 276
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 1 cut(s) 279
LpnPI CCDG 6 cut(s) 6, 36, 100, 233, 237, 258
Lsp1109I GCAGC 5 cut(s) 13, 22, 25, 28, 148
LweI GCATC 1 cut(s) 291
MaeI CTAG 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 260
MalI GATC 1 cut(s) 281
MboI GATC 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 2 cut(s) 105, 248
MspA1I CMGCKG 1 cut(s) 324
MspI CCGG 1 cut(s) 220
Mva1269I GAATGC 1 cut(s) 114
MwoI GCNNNNNNNGC 7 cut(s) 26, 32, 35, 41, 47, 77, 86
NdeII GATC 1 cut(s) 279
NmeAIII GCCGAG 1 cut(s) 179
NmuCI GTSAC 1 cut(s) 260
NsbI TGCGCA 1 cut(s) 113
PaqCI CACCTGC 1 cut(s) 11
PctI GAATGC 1 cut(s) 114
PflMI CCANNNNNTGG 1 cut(s) 251
PkrI GCNGC 5 cut(s) 28, 37, 40, 43, 163
PstNI CAGNNNCTG 2 cut(s) 26, 251
SatI GCNGC 5 cut(s) 27, 36, 39, 42, 162
Sau3AI GATC 1 cut(s) 279
SetI ASST 9 cut(s) 25, 37, 82, 97, 119, 130, 163, 207, 217
SfaNI GCATC 1 cut(s) 291
SfcI CTRYAG 1 cut(s) 30
SsiI CCGC 2 cut(s) 151, 324
SspMI CTAG 1 cut(s) 105
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 5 cut(s) 26, 35, 38, 41, 161
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 2 cut(s) 138, 300
Van91I CCANNNNNTGG 1 cut(s) 251
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.