Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0010831

Physical Location & Seq

Genomic Coordinates Forward (+)

7655177 .. 7657265

Gene Structure 2089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0097500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGAGTGGACTTGGCTGGAGAGTGTGTCGTCGAACCGGCAGAGGGTCGTGGAGGAGTTGGTTCAAGGTCGGGAGATGGTGAATCAGCTTCAGAGGTGTCTTAGTGGTGACGTCAGATCGGCGGAGGGTCTTGTTACGAAGATCTTGGGGTCGTTCACAAACACCCTTCGTATCTTGAATGGGAGTGAAGAGGCTAAAGAGGAGCTCATCTCTCAGATTCAAGCCAATAGTCCTACTAGTACTGTTACTGCTGCTGCTGGTGCCGATTCATCGTCTTGGGATGCTCTTGATGATGCTGTTAAGTCCGAGGATTCGAATGAAGAGAGTTACAAGAGTACCGAAACGTTCAAGGATCGCAGAGGTTCATACAAGAGAAGAAAAACTTCACATTCATGGACCAAAGACACTCTGGATTTAGTGGACGATGGTCATGCATGGAGGAAGTACGGACAAAAGATGATCCTGAATACTAGACATCCAAGGAACTACTTCAGGTGCACTCATAAGTTTGATCAAGGCTGCAAAGCAACCAAACATGTGCAGAGGATTAAAGATGAACCCCAACTCTTTCGGACCACATACTATGGCAATCACACATGCACTGACTATCTCAGAGCTCCTGAGCTCATCTTAGATTCTTCAAGTTCTCAAGACTCTCCCAAGAATATGATCAGATTCGACAACACCAACAACGACTTCACCCGCAAACAAGAACATCCCTTTTTCTCATCCTTCACATCGATCAAAAATGAGAGCGTCAAGGAAGAAGAGATGATCACACCAAGTAATGATCATGATCATGTGATTCACCACAACCAACAATTGTCGTCGTGTGACTATCTCATGTCGCCTGGTCTAGGAGTGTTTGAGTCGTCCGCATCGACTATCGCATATGATCACGAGGATGTGATTTCTAGGATAATGGTGGGATACTTTGACGATGAAGTAGATTTTCCATATGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002082 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006140 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009892 GO:0009987 GO:0009991 GO:0010563 GO:0016020 GO:0019216 GO:0019219 GO:0019220 GO:0019222 GO:0019866 GO:0031090 GO:0031323 GO:0031324 GO:0031333 GO:0031667 GO:0031668 GO:0031669 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0042325 GO:0042326 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043457 GO:0043467 GO:0044087 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045934 GO:0045936 GO:0045980 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051174 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0071496 GO:0080090 GO:0090324 GO:1900542 GO:1900543 GO:1901856 GO:1902956 GO:1902957 GO:1903578 GO:1903579 GO:1905446 GO:1905447

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

322

Amino Acids

37.0

Weight (kDa)

5.41

Isoelectric Point (pI)

53.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	141 - 200	1.6e-24	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09700 AT5G03030 AT5G03030
fragaria_vesca	FvH4_6g15420
malus_domestica	MD04G1103700.v1.1 MD12G1123600.v1.1
prunus_persica	Prupe.6G240700_v2.0.a1
pyrus_communis	pycom04g09890 pycom12g12230
rosa_chinensis	RchiOBHm_Chr3g0468901 RchiOBHm_Chr6g0264141
rosa_laevigata	RLG00000024402
rosa_multiflora	Rmu_sc0001639.1_g000012 Rmu_sc0003298.1_g000003
rosa_roxburghii	Rroxscaffold_6G00412470
rosa_rugosa	Rorug03G0097500
rosa_samantha	Rh3AG147100 Rh3BG169600 Rh3DG205500
rosa_wichuraiana	Rw3G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	260
AciI	CCGC	3 cut(s)	122, 703, 876
AclI	AACGTT	1 cut(s)	344
AclWI	GGATC	2 cut(s)	360, 454
AcsI	RAATTY	1 cut(s)	962
AcuI	CTGAAG	2 cut(s)	74, 475
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	3 cut(s)	241, 337, 446
AfiI	CCNNNNNNNGG	2 cut(s)	43, 857
AflIII	ACRYGT	1 cut(s)	535
AgsI	TTSAA	5 cut(s)	65, 178, 221, 349, 642
AhlI	ACTAGT	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	850
AjuI	GAANNNNNNNTTGG	2 cut(s)	680, 712
AluBI	AGCT	4 cut(s)	88, 205, 617, 625
AluI	AGCT	4 cut(s)	88, 205, 617, 625
Alw21I	GWGCWC	4 cut(s)	207, 500, 619, 627
Alw44I	GTGCAC	1 cut(s)	496
AlwI	GGATC	2 cut(s)	360, 454
ApaLI	GTGCAC	1 cut(s)	496
ApeKI	GCWGC	3 cut(s)	251, 254, 519
ApoI	RAATTY	1 cut(s)	962
Asp700I	GAANNNNTTC	2 cut(s)	382, 488
AspS9I	GGNCC	2 cut(s)	396, 573
AsuHPI	GGTGA	4 cut(s)	91, 119, 691, 800
AsuII	TTCGAA	1 cut(s)	314
AvaII	GGWCC	2 cut(s)	396, 573
BaeGI	GKGCMC	1 cut(s)	500
BaeI	ACNNNNGTAYC	2 cut(s)	319, 352
BanI	GGYRCC	1 cut(s)	260
BanII	GRGCYC	3 cut(s)	207, 619, 627
BauI	CACGAG	1 cut(s)	899
Bbv12I	GWGCWC	4 cut(s)	207, 500, 619, 627
BbvI	GCAGC	3 cut(s)	238, 241, 506
BccI	CCATC	2 cut(s)	70, 419
BcgI	CGANNNNNNTGC	2 cut(s)	413, 447
BciT130I	CCWGG	1 cut(s)	852
BciVI	GTATCC	1 cut(s)	923
BclI	TGATCA	6 cut(s)	511, 669, 774, 790, 796, 895
BcuI	ACTAGT	1 cut(s)	236
BfaI	CTAG	4 cut(s)	237, 471, 857, 915
BfuI	GTATCC	1 cut(s)	923
BglII	AGATCT	1 cut(s)	141
BisI	GCNGC	3 cut(s)	252, 255, 520
BlsI	GCNGC	3 cut(s)	253, 256, 521
BmcAI	AGTACT	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	852
Bme18I	GGWCC	2 cut(s)	396, 573
BmgT120I	GGNCC	2 cut(s)	396, 573
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	852
BmsI	GCATC	3 cut(s)	271, 283, 887
BoxI	GACNNNNGTC	1 cut(s)	426
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
BpmI	CTGGAG	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	621
Bpu14I	TTCGAA	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	633
Bsa29I	ATCGAT	1 cut(s)	740
BsaBI	GATNNNNATC	1 cut(s)	795
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	306, 479
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 857
Bse118I	RCCGGY	1 cut(s)	36
Bse8I	GATNNNNATC	1 cut(s)	795
BseBI	CCWGG	1 cut(s)	852
BseCI	ATCGAT	1 cut(s)	740
BseDI	CCNNGG	2 cut(s)	306, 479
BseGI	GGATG	5 cut(s)	286, 475, 715, 728, 910
BseJI	GATNNNNATC	1 cut(s)	795
BseLI	CCNNNNNNNGG	2 cut(s)	43, 857
BseMII	CTCAG	3 cut(s)	227, 612, 625
BseRI	GAGGAG	2 cut(s)	68, 215
BseSI	GKGCMC	1 cut(s)	500
BseXI	GCAGC	3 cut(s)	238, 241, 506
BsgI	GTGCAG	1 cut(s)	560
BshNI	GGYRCC	1 cut(s)	260
BshVI	ATCGAT	1 cut(s)	740
BsiHKAI	GWGCWC	4 cut(s)	207, 500, 619, 627
BsiSI	CCGG	1 cut(s)	37
BslI	CCNNNNNNNGG	2 cut(s)	43, 857
Bsp119I	TTCGAA	1 cut(s)	314
Bsp1286I	GDGCHC	4 cut(s)	207, 500, 619, 627
BspACI	CCGC	3 cut(s)	122, 703, 876
BspCNI	CTCAG	3 cut(s)	226, 613, 624
BspDI	ATCGAT	1 cut(s)	740
BspHI	TCATGA	1 cut(s)	793
BspLI	GGNNCC	1 cut(s)	262
BspPI	GGATC	2 cut(s)	360, 454
BspT104I	TTCGAA	1 cut(s)	314
BspT107I	GGYRCC	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	36
BssAI	RCCGGY	1 cut(s)	36
BssECI	CCNNGG	2 cut(s)	306, 479
BssNI	GRCGYC	1 cut(s)	111
BssSI	CACGAG	1 cut(s)	899
BssT1I	CCWWGG	1 cut(s)	479
Bst2BI	CACGAG	1 cut(s)	899
Bst2UI	CCWGG	1 cut(s)	852
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	3 cut(s)	183, 315, 762
BstACI	GRCGYC	1 cut(s)	111
BstBI	TTCGAA	1 cut(s)	314
BstDEI	CTNAG	5 cut(s)	101, 213, 611, 621, 631
BstENI	CCTNNNNNAGG	1 cut(s)	855
BstF5I	GGATG	5 cut(s)	286, 475, 715, 728, 910
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	852
BstNSI	RCATGY	2 cut(s)	539, 600
BstPAI	GACNNNNGTC	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	850
BstSLI	GKGCMC	1 cut(s)	500
BstV1I	GCAGC	3 cut(s)	238, 241, 506
BstX2I	RGATCY	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	141
Bsu15I	ATCGAT	1 cut(s)	740
BsuI	GTATCC	1 cut(s)	923
BsuTUI	ATCGAT	1 cut(s)	740
BtsCI	GGATG	5 cut(s)	286, 475, 715, 728, 910
BtsIMutI	CAGTG	1 cut(s)	600
CciI	TCATGA	1 cut(s)	793
Cfr10I	RCCGGY	1 cut(s)	36
Cfr13I	GGNCC	2 cut(s)	396, 573
ClaI	ATCGAT	1 cut(s)	740
CseI	GACGC	1 cut(s)	745
Csp6I	GTAC	3 cut(s)	240, 336, 445
CviAII	CATG	8 cut(s)	393, 431, 435, 536, 597, 794, 800, 844
CviJI	RGCY	8 cut(s)	16, 88, 194, 205, 224, 519, 617, 625
CviKI_1	RGCY	8 cut(s)	16, 88, 194, 205, 224, 519, 617, 625
CviQI	GTAC	3 cut(s)	240, 336, 445
DdeI	CTNAG	5 cut(s)	101, 213, 611, 621, 631
Eam1104I	CTCTTC	3 cut(s)	183, 315, 762
EarI	CTCTTC	3 cut(s)	183, 315, 762
EciI	GGCGGA	1 cut(s)	137
Ecl136II	GAGCTC	3 cut(s)	205, 617, 625
Eco130I	CCWWGG	1 cut(s)	479
Eco24I	GRGCYC	3 cut(s)	207, 619, 627
Eco47I	GGWCC	2 cut(s)	396, 573
Eco53kI	GAGCTC	3 cut(s)	205, 617, 625
Eco57I	CTGAAG	2 cut(s)	74, 475
EcoICRI	GAGCTC	3 cut(s)	205, 617, 625
EcoNI	CCTNNNNNAGG	1 cut(s)	855
EcoRII	CCWGG	1 cut(s)	850
EcoT14I	CCWWGG	1 cut(s)	479
EcoT22I	ATGCAT	1 cut(s)	436
EcoT38I	GRGCYC	3 cut(s)	207, 619, 627
ErhI	CCWWGG	1 cut(s)	479
FaeI	CATG	8 cut(s)	396, 434, 438, 539, 600, 797, 803, 847
FalI	AAGNNNNNCTT	2 cut(s)	367, 399
FatI	CATG	8 cut(s)	392, 430, 434, 535, 596, 793, 799, 843
FauI	CCCGC	1 cut(s)	710
FauNDI	CATATG	2 cut(s)	892, 958
FbaI	TGATCA	6 cut(s)	511, 669, 774, 790, 796, 895
Fnu4HI	GCNGC	3 cut(s)	252, 255, 520
FokI	GGATG	5 cut(s)	293, 462, 702, 715, 917
FriOI	GRGCYC	3 cut(s)	207, 619, 627
Fsp4HI	GCNGC	3 cut(s)	252, 255, 520
FspBI	CTAG	4 cut(s)	237, 471, 857, 915
GluI	GCNGC	3 cut(s)	252, 255, 520
GsuI	CTGGAG	1 cut(s)	38
HapII	CCGG	1 cut(s)	37
HgaI	GACGC	1 cut(s)	745
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	8 cut(s)	396, 434, 438, 539, 600, 797, 803, 847
HinfI	GANTC	9 cut(s)	82, 217, 266, 311, 635, 653, 675, 805, 869
HpaII	CCGG	1 cut(s)	37
HphI	GGTGA	4 cut(s)	91, 119, 691, 800
Hpy166II	GTNNAC	4 cut(s)	9, 156, 421, 498
Hpy188I	TCNGA	7 cut(s)	93, 116, 216, 307, 573, 614, 674
Hpy188III	TCNNGA	9 cut(s)	71, 175, 287, 410, 463, 620, 650, 794, 899
Hpy8I	GTNNAC	4 cut(s)	9, 156, 421, 498
Hpy99I	CGWCG	2 cut(s)	34, 832
HpyAV	CCTTC	2 cut(s)	176, 742
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	2 cut(s)	111, 344
HpyCH4V	TGCA	5 cut(s)	434, 498, 522, 541, 600
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	5 cut(s)	101, 213, 611, 621, 631
HpySE526I	ACGT	2 cut(s)	111, 344
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	8 cut(s)	396, 434, 438, 539, 600, 797, 803, 847
Ksp22I	TGATCA	6 cut(s)	511, 669, 774, 790, 796, 895
LmnI	GCTCC	2 cut(s)	202, 622
LpnPI	CCDG	9 cut(s)	2, 50, 243, 395, 476, 478, 633, 837, 864
Lsp1109I	GCAGC	3 cut(s)	238, 241, 506
LweI	GCATC	3 cut(s)	271, 283, 887
MaeI	CTAG	4 cut(s)	237, 471, 857, 915
MaeII	ACGT	2 cut(s)	111, 344
MaeIII	GTNAC	5 cut(s)	107, 133, 244, 326, 833
MboII	GAAGA	7 cut(s)	151, 200, 332, 387, 630, 776, 779
MfeI	CAATTG	1 cut(s)	821
MflI	RGATCY	1 cut(s)	141
MhlI	GDGCHC	4 cut(s)	207, 500, 619, 627
MluCI	AATT	2 cut(s)	821, 962
MlyI	GAGTC	2 cut(s)	647, 878
Mph1103I	ATGCAT	1 cut(s)	436
MroXI	GAANNNNTTC	2 cut(s)	382, 488
MseI	TTAA	2 cut(s)	300, 549
MslI	CAYNNNNRTG	3 cut(s)	391, 798, 903
MspI	CCGG	1 cut(s)	37
MspR9I	CCNGG	1 cut(s)	852
MunI	CAATTG	1 cut(s)	821
MvaI	CCWGG	1 cut(s)	852
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeI	CATATG	2 cut(s)	892, 958
NlaIII	CATG	8 cut(s)	396, 434, 438, 539, 600, 797, 803, 847
NlaIV	GGNNCC	1 cut(s)	262
NmuCI	GTSAC	2 cut(s)	107, 833
NsiI	ATGCAT	1 cut(s)	436
NspI	RCATGY	2 cut(s)	539, 600
NspV	TTCGAA	1 cut(s)	314
PagI	TCATGA	1 cut(s)	793
PciI	ACATGT	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	1 cut(s)	878
PdmI	GAANNNNTTC	2 cut(s)	382, 488
PfeI	GAWTC	7 cut(s)	82, 217, 266, 311, 635, 675, 805
PkrI	GCNGC	3 cut(s)	253, 256, 521
PleI	GAGTC	2 cut(s)	647, 877
PpsI	GAGTC	2 cut(s)	647, 877
PscI	ACATGT	1 cut(s)	535
PshAI	GACNNNNGTC	1 cut(s)	426
Psp124BI	GAGCTC	3 cut(s)	207, 619, 627
Psp1406I	AACGTT	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	850
PspGI	CCWGG	1 cut(s)	850
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	2 cut(s)	396, 573
PsuI	RGATCY	1 cut(s)	141
RsaI	GTAC	3 cut(s)	241, 337, 446
RsaNI	GTAC	3 cut(s)	240, 336, 445
RseI	CAYNNNNRTG	3 cut(s)	391, 798, 903
SacI	GAGCTC	3 cut(s)	207, 619, 627
SaqAI	TTAA	2 cut(s)	300, 549
SatI	GCNGC	3 cut(s)	252, 255, 520
Sau96I	GGNCC	2 cut(s)	396, 573
ScaI	AGTACT	1 cut(s)	241
SchI	GAGTC	2 cut(s)	647, 878
ScrFI	CCNGG	1 cut(s)	852
SduI	GDGCHC	4 cut(s)	207, 500, 619, 627
SfaNI	GCATC	3 cut(s)	271, 283, 887
SfuI	TTCGAA	1 cut(s)	314
SinI	GGWCC	2 cut(s)	396, 573
SmiMI	CAYNNNNRTG	3 cut(s)	391, 798, 903
SmlI	CTYRAG	1 cut(s)	648
SmoI	CTYRAG	1 cut(s)	648
SpeI	ACTAGT	1 cut(s)	236
Sse9I	AATT	2 cut(s)	821, 962
SsiI	CCGC	3 cut(s)	122, 703, 876
SspMI	CTAG	4 cut(s)	237, 471, 857, 915
SstI	GAGCTC	3 cut(s)	207, 619, 627
StyD4I	CCNGG	1 cut(s)	850
StyI	CCWWGG	1 cut(s)	479
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	2 cut(s)	114, 347
TaqI	TCGA	5 cut(s)	32, 314, 678, 740, 881
TasI	AATT	2 cut(s)	821, 962
TatI	WGTACW	1 cut(s)	239
TfiI	GAWTC	7 cut(s)	82, 217, 266, 311, 635, 675, 805
Tru1I	TTAA	2 cut(s)	300, 549
Tru9I	TTAA	2 cut(s)	300, 549
TscAI	CASTG	1 cut(s)	607
TseFI	GTSAC	2 cut(s)	107, 833
TseI	GCWGC	3 cut(s)	251, 254, 519
Tsp45I	GTSAC	2 cut(s)	107, 833
TspDTI	ATGAA	6 cut(s)	258, 333, 354, 381, 570, 957
TspGWI	ACGGA	1 cut(s)	462
TspRI	CASTG	1 cut(s)	607
VneI	GTGCAC	1 cut(s)	496
VpaK11BI	GGWCC	2 cut(s)	396, 573
XagI	CCTNNNNNAGG	1 cut(s)	855
XapI	RAATTY	1 cut(s)	962
XceI	RCATGY	2 cut(s)	539, 600
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XmnI	GAANNNNTTC	2 cut(s)	382, 488
XspI	CTAG	4 cut(s)	237, 471, 857, 915
ZraI	GACGTC	1 cut(s)	112
ZrmI	AGTACT	1 cut(s)	241
Zsp2I	ATGCAT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.