Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010831

Physical Location & Seq

Genomic Coordinates Forward (+)

19236095 .. 19236433

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23689

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTAACTGCATCGATAGGAGGAGCGGCTGTTGCTGCTGCTGCTTATGCTGGTAGATACAGCATTAAGGCTTGGCAAGCATTCAAAGCAAGACCGCCTACAGCTAGACTCCGTAAATTTTATGAAGGTGGTTTTCAACCTACTATGACCCGGAGGGAAGCAGCTCTAATACTTGGAGTCAGGGAGAGTGTTCCCATAACCAAGGTCAGGGAAGCCCATAGGAGGGTGATGGTCGCTAACCATCCAGATGCAGGAGGTAGCCATTTCCTAGCATCTAAAATTAACGAAGCCAGAGATACTTTACATGGAAAAACCAGGGGCTGCAGCTCTGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002082 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006140 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009892 GO:0009987 GO:0009991 GO:0010563 GO:0016020 GO:0019216 GO:0019219 GO:0019220 GO:0019222 GO:0019866 GO:0031090 GO:0031323 GO:0031324 GO:0031333 GO:0031667 GO:0031668 GO:0031669 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0042325 GO:0042326 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043457 GO:0043467 GO:0044087 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045934 GO:0045936 GO:0045980 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051174 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0071496 GO:0080090 GO:0090324 GO:1900542 GO:1900543 GO:1901856 GO:1902956 GO:1902957 GO:1903578 GO:1903579 GO:1905446 GO:1905447

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.16

Weight (kDa)

10.69

Isoelectric Point (pI)

30.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09700 AT5G03030 AT5G03030
fragaria_vesca	FvH4_6g15420
malus_domestica	MD04G1103700.v1.1 MD12G1123600.v1.1
prunus_persica	Prupe.6G240700_v2.0.a1
pyrus_communis	pycom04g09890 pycom12g12230
rosa_chinensis	RchiOBHm_Chr3g0468901 RchiOBHm_Chr6g0264141
rosa_laevigata	RLG00000024402
rosa_multiflora	Rmu_sc0001639.1_g000012 Rmu_sc0003298.1_g000003
rosa_roxburghii	Rroxscaffold_6G00412470
rosa_rugosa	Rorug03G0097500
rosa_samantha	Rh3AG147100 Rh3BG169600 Rh3DG205500
rosa_wichuraiana	Rw3G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	26
AciI	CCGC	2 cut(s)	26, 95
AcsI	RAATTY	2 cut(s)	116, 332
AfiI	CCNNNNNNNGG	4 cut(s)	207, 222, 223, 251
AgsI	TTSAA	2 cut(s)	85, 137
AjnI	CCWGG	1 cut(s)	314
AluBI	AGCT	3 cut(s)	104, 164, 327
AluI	AGCT	3 cut(s)	104, 164, 327
AlwNI	CAGNNNCTG	1 cut(s)	321
ApeKI	GCWGC	6 cut(s)	35, 38, 41, 161, 321, 324
ApoI	RAATTY	2 cut(s)	116, 332
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	238
BbvI	GCAGC	5 cut(s)	22, 25, 28, 173, 308
BccI	CCATC	2 cut(s)	223, 249
BciT130I	CCWGG	1 cut(s)	316
BcnI	CCSGG	1 cut(s)	151
BfaI	CTAG	2 cut(s)	105, 269
BfmI	CTRYAG	2 cut(s)	99, 322
BisI	GCNGC	7 cut(s)	27, 36, 39, 42, 162, 322, 325
BlsI	GCNGC	7 cut(s)	28, 37, 40, 43, 163, 323, 326
Bme1390I	CCNGG	2 cut(s)	151, 316
BmrFI	CCNGG	2 cut(s)	151, 316
BmsI	GCATC	3 cut(s)	20, 238, 281
BpuMI	CCSGG	1 cut(s)	151
Bsa29I	ATCGAT	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	201, 315
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	4 cut(s)	207, 222, 223, 251
BseBI	CCWGG	1 cut(s)	316
BseCI	ATCGAT	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	201, 315
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	4 cut(s)	207, 222, 223, 251
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	5 cut(s)	22, 25, 28, 173, 308
BshVI	ATCGAT	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	151
BslI	CCNNNNNNNGG	4 cut(s)	207, 222, 223, 251
BsmI	GAATGC	1 cut(s)	80
BspACI	CCGC	2 cut(s)	26, 95
BspDI	ATCGAT	1 cut(s)	14
BspMAI	CTGCAG	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	26
BssECI	CCNNGG	2 cut(s)	201, 315
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 35, 41, 47, 77, 86
BstNI	CCWGG	1 cut(s)	316
BstSCI	CCNGG	2 cut(s)	149, 314
BstSFI	CTRYAG	2 cut(s)	99, 322
BstV1I	GCAGC	5 cut(s)	22, 25, 28, 173, 308
Bsu15I	ATCGAT	1 cut(s)	14
BsuTUI	ATCGAT	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	78
CaiI	CAGNNNCTG	1 cut(s)	321
ClaI	ATCGAT	1 cut(s)	14
CviAII	CATG	1 cut(s)	305
CviJI	RGCY	9 cut(s)	29, 71, 104, 164, 215, 261, 290, 321, 327
CviKI_1	RGCY	9 cut(s)	29, 71, 104, 164, 215, 261, 290, 321, 327
Eco130I	CCWWGG	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	1 cut(s)	308
FaiI	YATR	6 cut(s)	48, 123, 146, 197, 219, 306
FatI	CATG	1 cut(s)	304
Fnu4HI	GCNGC	7 cut(s)	27, 36, 39, 42, 162, 322, 325
FokI	GGATG	1 cut(s)	228
Fsp4HI	GCNGC	7 cut(s)	27, 36, 39, 42, 162, 322, 325
FspBI	CTAG	2 cut(s)	105, 269
GluI	GCNGC	7 cut(s)	27, 36, 39, 42, 162, 322, 325
HapII	CCGG	1 cut(s)	151
Hin1II	CATG	1 cut(s)	308
HinfI	GANTC	2 cut(s)	108, 177
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	1 cut(s)	238
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	119
HpyCH4V	TGCA	3 cut(s)	11, 251, 324
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 35, 41, 47, 77, 86
Hsp92II	CATG	1 cut(s)	308
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	9 cut(s)	36, 164, 166, 193, 237, 258, 301, 304, 328
Lsp1109I	GCAGC	5 cut(s)	22, 25, 28, 173, 308
LweI	GCATC	3 cut(s)	20, 238, 281
MaeI	CTAG	2 cut(s)	105, 269
MaeIII	GTNAC	1 cut(s)	4
MbiI	CCGCTC	1 cut(s)	26
MluCI	AATT	3 cut(s)	116, 279, 332
MlyI	GAGTC	2 cut(s)	102, 186
MnlI	CCTC	4 cut(s)	14, 147, 216, 248
MseI	TTAA	2 cut(s)	66, 282
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	2 cut(s)	151, 316
Mva1269I	GAATGC	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	316
MwoI	GCNNNNNNNGC	6 cut(s)	32, 35, 41, 47, 77, 86
NciI	CCSGG	1 cut(s)	151
NlaIII	CATG	1 cut(s)	308
PctI	GAATGC	1 cut(s)	80
PkrI	GCNGC	7 cut(s)	28, 37, 40, 43, 163, 323, 326
PleI	GAGTC	2 cut(s)	102, 185
PpsI	GAGTC	2 cut(s)	102, 185
Psp6I	CCWGG	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	314
PstI	CTGCAG	1 cut(s)	326
PstNI	CAGNNNCTG	1 cut(s)	321
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	66, 282
SatI	GCNGC	7 cut(s)	27, 36, 39, 42, 162, 322, 325
SchI	GAGTC	2 cut(s)	102, 186
ScrFI	CCNGG	2 cut(s)	151, 316
SetI	ASST	7 cut(s)	106, 130, 142, 166, 207, 259, 329
SfaNI	GCATC	3 cut(s)	20, 238, 281
SfcI	CTRYAG	2 cut(s)	99, 322
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	3 cut(s)	116, 279, 332
SsiI	CCGC	2 cut(s)	26, 95
SspMI	CTAG	2 cut(s)	105, 269
StyD4I	CCNGG	2 cut(s)	149, 314
StyI	CCWWGG	1 cut(s)	201
TaqI	TCGA	1 cut(s)	14
TasI	AATT	3 cut(s)	116, 279, 332
TauI	GCSGC	1 cut(s)	29
Tru1I	TTAA	2 cut(s)	66, 282
Tru9I	TTAA	2 cut(s)	66, 282
TseI	GCWGC	6 cut(s)	35, 38, 41, 161, 321, 324
TspDTI	ATGAA	1 cut(s)	138
TspGWI	ACGGA	1 cut(s)	101
XapI	RAATTY	2 cut(s)	116, 332
XspI	CTAG	2 cut(s)	105, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.