Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010831

Physical Location & Seq

Genomic Coordinates Forward (+)

23951909 .. 23954324

Gene Structure 2416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G240700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTCACACCTTTGATCGGAGGAATCGCTGTAGCTGCCGCAGCTTATGCTGGTAGATATAGCATTCAGGCTTGGCAAGCATTCAAAGCAAGACCACCTACAGCTAGGCTGCGTAAATTTTACGAAGGTGGTTTTCAATCTACCATGACACGAAGGGAAGCAGCTCTCATACTTGGAGTGAGGGAAAGTACCCCCACAGACAAGGTCAGGGAAGCGCATAGGAGGGTGATGGTTGCTAATCATCCAGATGCAGGGGGTAGCCATTACCTTGCATCTAAAATTAATGAAGCTAAAGATATTCTGCTTGGAAGATCCAAGGGCATGGGCTCTGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002082 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006140 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009892 GO:0009987 GO:0009991 GO:0010563 GO:0016020 GO:0019216 GO:0019219 GO:0019220 GO:0019222 GO:0019866 GO:0031090 GO:0031323 GO:0031324 GO:0031333 GO:0031667 GO:0031668 GO:0031669 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0042325 GO:0042326 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043457 GO:0043467 GO:0044087 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045934 GO:0045936 GO:0045980 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051174 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0071496 GO:0080090 GO:0090324 GO:1900542 GO:1900543 GO:1901856 GO:1902956 GO:1902957 GO:1903578 GO:1903579 GO:1905446 GO:1905447

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

12.15

Weight (kDa)

10.51

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09700 AT5G03030 AT5G03030
fragaria_vesca	FvH4_6g15420
malus_domestica	MD04G1103700.v1.1 MD12G1123600.v1.1
prunus_persica	Prupe.6G240700_v2.0.a1
pyrus_communis	pycom04g09890 pycom12g12230
rosa_chinensis	RchiOBHm_Chr3g0468901 RchiOBHm_Chr6g0264141
rosa_laevigata	RLG00000024402
rosa_multiflora	Rmu_sc0001639.1_g000012 Rmu_sc0003298.1_g000003
rosa_roxburghii	Rroxscaffold_6G00412470
rosa_rugosa	Rorug03G0097500
rosa_samantha	Rh3AG147100 Rh3BG169600 Rh3DG205500
rosa_wichuraiana	Rw3G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	116
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	2 cut(s)	17, 251
AgsI	TTSAA	2 cut(s)	85, 137
AluBI	AGCT	5 cut(s)	35, 44, 104, 164, 290
AluI	AGCT	5 cut(s)	35, 44, 104, 164, 290
AlwI	GGATC	1 cut(s)	306
ApeKI	GCWGC	4 cut(s)	35, 41, 109, 161
ApoI	RAATTY	1 cut(s)	116
AseI	ATTAAT	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	329
BbvI	GCAGC	4 cut(s)	22, 53, 96, 173
BccI	CCATC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	2 cut(s)	30, 99
BisI	GCNGC	5 cut(s)	36, 39, 42, 110, 162
BlsI	GCNGC	5 cut(s)	37, 40, 43, 111, 163
BmsI	GCATC	2 cut(s)	238, 281
BsaJI	CCNNGG	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 251
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	17, 251
BseXI	GCAGC	4 cut(s)	22, 53, 96, 173
BslI	CCNNNNNNNGG	2 cut(s)	17, 251
BsmI	GAATGC	2 cut(s)	63, 80
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	2 cut(s)	15, 311
BspACI	CCGC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	2 cut(s)	15, 311
BssT1I	CCWWGG	1 cut(s)	315
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	2 cut(s)	18, 314
BstMBI	GATC	2 cut(s)	15, 311
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 41, 47, 77, 86
BstSFI	CTRYAG	2 cut(s)	30, 99
BstV1I	GCAGC	4 cut(s)	22, 53, 96, 173
BstX2I	RGATCY	1 cut(s)	311
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	78
CfoI	GCGC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	2 cut(s)	145, 322
CviJI	RGCY	9 cut(s)	35, 44, 71, 104, 109, 164, 261, 290, 327
CviKI_1	RGCY	9 cut(s)	35, 44, 71, 104, 109, 164, 261, 290, 327
CviQI	GTAC	1 cut(s)	189
DpnI	GATC	2 cut(s)	17, 313
DpnII	GATC	2 cut(s)	15, 311
Eco130I	CCWWGG	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	329
EcoT14I	CCWWGG	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	2 cut(s)	148, 325
FaiI	YATR	6 cut(s)	48, 60, 146, 170, 219, 323
FatI	CATG	2 cut(s)	144, 321
Fnu4HI	GCNGC	5 cut(s)	36, 39, 42, 110, 162
FokI	GGATG	1 cut(s)	228
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	5 cut(s)	36, 39, 42, 110, 162
FspBI	CTAG	1 cut(s)	105
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	5 cut(s)	36, 39, 42, 110, 162
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	2 cut(s)	148, 325
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	1 cut(s)	24
HphI	GGTGA	1 cut(s)	238
Hpy188I	TCNGA	1 cut(s)	20
Hpy188III	TCNNGA	1 cut(s)	245
HpyAV	CCTTC	2 cut(s)	119, 147
HpyCH4V	TGCA	3 cut(s)	251, 272, 332
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 41, 47, 77, 86
Hsp92II	CATG	2 cut(s)	148, 325
HspAI	GCGC	1 cut(s)	215
Kzo9I	GATC	2 cut(s)	15, 311
LpnPI	CCDG	5 cut(s)	36, 53, 193, 237, 258
Lsp1109I	GCAGC	4 cut(s)	22, 53, 96, 173
LweI	GCATC	2 cut(s)	238, 281
MaeI	CTAG	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	2 cut(s)	17, 313
MboI	GATC	2 cut(s)	15, 311
MboII	GAAGA	1 cut(s)	321
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	2 cut(s)	116, 279
MnlI	CCTC	3 cut(s)	14, 174, 216
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	246
Mva1269I	GAATGC	2 cut(s)	63, 80
MwoI	GCNNNNNNNGC	5 cut(s)	35, 41, 47, 77, 86
NdeII	GATC	2 cut(s)	15, 311
NlaIII	CATG	2 cut(s)	148, 325
NmuCI	GTSAC	1 cut(s)	4
PctI	GAATGC	2 cut(s)	63, 80
PfeI	GAWTC	1 cut(s)	24
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	5 cut(s)	37, 40, 43, 111, 163
PshBI	ATTAAT	1 cut(s)	282
PsuI	RGATCY	1 cut(s)	311
PsyI	GACNNNGTC	1 cut(s)	203
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	5 cut(s)	36, 39, 42, 110, 162
Sau3AI	GATC	2 cut(s)	15, 311
SduI	GDGCHC	1 cut(s)	329
SfaNI	GCATC	2 cut(s)	238, 281
SfcI	CTRYAG	2 cut(s)	30, 99
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	2 cut(s)	116, 279
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	315
TasI	AATT	2 cut(s)	116, 279
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	24
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	4 cut(s)	35, 41, 109, 161
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	300
Tth111I	GACNNNGTC	1 cut(s)	203
VspI	ATTAAT	1 cut(s)	282
XapI	RAATTY	1 cut(s)	116
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.