Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010831

Physical Location & Seq

Genomic Coordinates Forward (+)

12629939 .. 12631950

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g09890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTGACGGCGTTGATAGGAGGAGTTGCTGTGGCTGCTGCTGCTTATGCTGGCAGATATGGCATTCAGGCTTGGCAAGCTTTTAAAGCAAGACCACCTACTGCTAGACTGCGGAAATTCTACGAGGGTGGTTTTCAGTCTACCATGACCAAAAGGGAAGCCGCTCTCATACTTGGAGTGAGGGAGACTACTCCTACAGACAAGATCCGGGAAGCTCATCGGAGGGTGATGGTTGCTAATCATCCAGATGCAGGGGGTAGCCATTACCTTGCATCCAAAATTAATGAAGCTAAAGAAATGATGCTTGGAAGAACCAAGGGTACCGGCTCTGCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002082 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006140 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009892 GO:0009987 GO:0009991 GO:0010563 GO:0016020 GO:0019216 GO:0019219 GO:0019220 GO:0019222 GO:0019866 GO:0031090 GO:0031323 GO:0031324 GO:0031333 GO:0031667 GO:0031668 GO:0031669 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0042325 GO:0042326 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043457 GO:0043467 GO:0044087 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045934 GO:0045936 GO:0045980 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051174 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0071496 GO:0080090 GO:0090324 GO:1900542 GO:1900543 GO:1901856 GO:1902956 GO:1902957 GO:1903578 GO:1903579 GO:1905446 GO:1905447

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

12.11

Weight (kDa)

10.38

Isoelectric Point (pI)

29.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pam16	PF03656	8 - 100	5e-06	Pam16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09700 AT5G03030 AT5G03030
fragaria_vesca	FvH4_6g15420
malus_domestica	MD04G1103700.v1.1 MD12G1123600.v1.1
prunus_persica	Prupe.6G240700_v2.0.a1
pyrus_communis	pycom04g09890 pycom12g12230
rosa_chinensis	RchiOBHm_Chr3g0468901 RchiOBHm_Chr6g0264141
rosa_laevigata	RLG00000024402
rosa_multiflora	Rmu_sc0001639.1_g000012 Rmu_sc0003298.1_g000003
rosa_roxburghii	Rroxscaffold_6G00412470
rosa_rugosa	Rorug03G0097500
rosa_samantha	Rh3AG147100 Rh3BG169600 Rh3DG205500
rosa_wichuraiana	Rw3G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	320
AccB1I	GGYRCC	1 cut(s)	320
AccBSI	CCGCTC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	140
AciI	CCGC	2 cut(s)	112, 162
AclWI	GGATC	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	116
AfaI	GTAC	1 cut(s)	322
AfiI	CCNNNNNNNGG	1 cut(s)	251
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	3 cut(s)	80, 215, 290
AluI	AGCT	3 cut(s)	80, 215, 290
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	199
ApeKI	GCWGC	3 cut(s)	35, 38, 41
ApoI	RAATTY	1 cut(s)	116
AseI	ATTAAT	1 cut(s)	282
Asp718I	GGTACC	1 cut(s)	320
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	2 cut(s)	16, 238
BanI	GGYRCC	1 cut(s)	320
BbvI	GCAGC	3 cut(s)	22, 25, 28
BccI	CCATC	1 cut(s)	223
BceAI	ACGGC	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	1 cut(s)	195
BisI	GCNGC	4 cut(s)	36, 39, 42, 162
BlsI	GCNGC	4 cut(s)	37, 40, 43, 163
Bme1390I	CCNGG	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	3 cut(s)	238, 281, 291
BpuMI	CCSGG	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse118I	RCCGGY	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	2 cut(s)	241, 272
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	3 cut(s)	22, 25, 28
BshNI	GGYRCC	1 cut(s)	320
BsiSI	CCGG	2 cut(s)	208, 324
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	63
Bsp143I	GATC	1 cut(s)	204
BspACI	CCGC	2 cut(s)	112, 162
BspLI	GGNNCC	1 cut(s)	322
BspPI	GGATC	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	323
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	315
BstC8I	GCNNGC	2 cut(s)	52, 78
BstF5I	GGATG	2 cut(s)	241, 272
BstKTI	GATC	1 cut(s)	207
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 41, 47, 60, 77, 86
BstSCI	CCNGG	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	22, 25, 28
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	241, 272
Cac8I	GCNNGC	2 cut(s)	52, 78
Cfr10I	RCCGGY	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	321
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	8 cut(s)	35, 71, 80, 161, 215, 261, 290, 327
CviKI_1	RGCY	8 cut(s)	35, 71, 80, 161, 215, 261, 290, 327
CviQI	GTAC	1 cut(s)	321
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
DraI	TTTAAA	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	1 cut(s)	148
FaiI	YATR	4 cut(s)	48, 60, 146, 170
FatI	CATG	1 cut(s)	144
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	4 cut(s)	36, 39, 42, 162
FokI	GGATG	2 cut(s)	228, 259
Fsp4HI	GCNGC	4 cut(s)	36, 39, 42, 162
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	4 cut(s)	36, 39, 42, 162
HapII	CCGG	2 cut(s)	208, 324
Hin1II	CATG	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	78
HpaII	CCGG	2 cut(s)	208, 324
HphI	GGTGA	2 cut(s)	16, 238
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	141
HpyCH4V	TGCA	2 cut(s)	251, 272
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 41, 47, 60, 77, 86
Hsp92II	CATG	1 cut(s)	148
KpnI	GGTACC	1 cut(s)	324
Kzo9I	GATC	1 cut(s)	204
LpnPI	CCDG	5 cut(s)	36, 53, 221, 237, 258
Lsp1109I	GCAGC	3 cut(s)	22, 25, 28
LweI	GCATC	3 cut(s)	238, 281, 291
MaeI	CTAG	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	1 cut(s)	206
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	1 cut(s)	204
MboII	GAAGA	1 cut(s)	321
MflI	RGATCY	1 cut(s)	204
MluCI	AATT	2 cut(s)	116, 279
MnlI	CCTC	4 cut(s)	14, 118, 174, 216
MseI	TTAA	2 cut(s)	84, 282
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	2 cut(s)	208, 324
MspR9I	CCNGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	63
MwoI	GCNNNNNNNGC	6 cut(s)	35, 41, 47, 60, 77, 86
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	4
PctI	GAATGC	1 cut(s)	63
PfoI	TCCNGGA	1 cut(s)	207
PkrI	GCNGC	4 cut(s)	37, 40, 43, 163
PshBI	ATTAAT	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	322
PsrI	GAACNNNNNNTAC	2 cut(s)	304, 336
PsuI	RGATCY	1 cut(s)	204
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	84, 282
SatI	GCNGC	4 cut(s)	36, 39, 42, 162
Sau3AI	GATC	1 cut(s)	204
ScrFI	CCNGG	1 cut(s)	209
SetI	ASST	5 cut(s)	82, 100, 217, 270, 292
SfaNI	GCATC	3 cut(s)	238, 281, 291
SfcI	CTRYAG	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	2 cut(s)	116, 279
SsiI	CCGC	2 cut(s)	112, 162
SspMI	CTAG	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	315
TasI	AATT	2 cut(s)	116, 279
TauI	GCSGC	1 cut(s)	164
Tru1I	TTAA	2 cut(s)	84, 282
Tru9I	TTAA	2 cut(s)	84, 282
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	3 cut(s)	35, 38, 41
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	300
VspI	ATTAAT	1 cut(s)	282
XapI	RAATTY	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	140
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.