AT3G09890

Ankyrin repeats (many copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014540
Physical Location & Seq
Forward (+)
3032503 .. 3034497
1995 bp
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UTR
Exon/CDS
Intron
AT3G09890.1

Sequence Viewer

Length: 621 bp
ATGGCTGTTCCAAGAGGAGGAAATGGTTTGAATGAAGAAGAAGATGTTGACGGAGAAAACGCTATCTTTGAGGAAAACGGTGTTGACTACGACACCGATTCCGAGCTTCCCTCTCACCTCCGTGACTTGGCCGCCGCTGCTCAGGCCGGAGATGTCGCCGCCTTGCGCACCGCCATCGACAATTTGAATGGGAGAGTCGATGAGCCACTCGAGGATAATGACTCGGCACTTCACTTGGCATGTCTATATGGTCACCTACCTTGTGTTCAGCTGCTCTTAGAAAGAGGAGCTGATATGGAAGTGAAAGATGAAGACGAAGCAATTCCTCTACATGATGCTTGTGCTGGAGGATACTTGGAAATAGTACAGCTTCTTTTTAGCCGAGCTAGTAGTCCTGAATGTGTGAAGAGAATGATTGAAACAGCAGATATAGAAGGTGATACTCCTCTGCATCACGCAGCAAGAGGTGAACATGTTGACGTGGTTAGGTTTTTGCTGGGTTCCGGGGCTTCACCAACGACACAAAACTCCTATGGGAAGACACCAGGTGAATTAGCTGATTTAAACACTGATGCTAAGAGGATACTCGAAGAAGCGATAAACAACTCAATGATCTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

206

Amino Acids

22.11

Weight (kDa)

4.28

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 44 - 128 2.1e-13 Ankyrin repeats (3 copies)
Ank_5 PF13857 70 - 105 1.9e-06 Ankyrin repeats (many copies)
Ank PF00023 73 - 103 2.6e-08 Ankyrin repeat
Ank_4 PF13637 77 - 125 1.1e-08 Ankyrin repeats (many copies)
Ank_KRIT1 PF24521 105 - 200 2e-06 KRIT1 ankyrin-repeats domain
Ank_2 PF12796 129 - 176 4e-08 Ankyrin repeats (3 copies)
Ank_4 PF13637 132 - 166 3.5e-06 Ankyrin repeats (many copies)
Ank_5 PF13857 145 - 186 8.8e-07 Ankyrin repeats (many copies)
Ank PF00023 146 - 176 2.6e-08 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09890 AT3G09890
fragaria_vesca FvH4_6g16830
malus_domestica MD12G1106800.v1.1
prunus_persica Prupe.7G125700_v2.0.a1
pyrus_communis pycom12g10730
rosa_chinensis RchiOBHm_Chr3g0470841
rosa_laevigata RLG00000024241
rosa_multiflora Rmu_co8290787.1_g000001 Rmu_sc0002790.1_g000024
rosa_roxburghii Rroxscaffold_6G00410490
rosa_rugosa Rorug03G0113100
rosa_samantha Rh3AG162800 Rh3BG187900 Rh3CG177900 Rh3DG187900
rosa_wichuraiana Rw3G015330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 167
AciI CCGC 4 cut(s) 132, 135, 159, 171
AcoI YGGCCR 1 cut(s) 129
AdeI CACNNNGTG 1 cut(s) 548
AfaI GTAC 1 cut(s) 366
AfiI CCNNNNNNNGG 2 cut(s) 17, 127
AflIII ACRYGT 1 cut(s) 472
AgsI TTSAA 3 cut(s) 31, 187, 419
AjiI CACGTC 1 cut(s) 481
AjnI CCWGG 1 cut(s) 544
AleI CACNNNNGTG 1 cut(s) 120
AluBI AGCT 6 cut(s) 106, 271, 290, 370, 386, 557
AluI AGCT 6 cut(s) 106, 271, 290, 370, 386, 557
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 2 cut(s) 129, 144
ApeKI GCWGC 3 cut(s) 137, 271, 458
Asp700I GAANNNNTTC 1 cut(s) 321
AspLEI GCGC 1 cut(s) 168
AsuC2I CCSGG 1 cut(s) 505
AsuHPI GGTGA 6 cut(s) 107, 245, 449, 479, 504, 560
AvaI CYCGRG 1 cut(s) 209
BbsI GAAGAC 2 cut(s) 318, 545
BbvI GCAGC 3 cut(s) 124, 258, 470
BccI CCATC 1 cut(s) 182
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BciT130I CCWGG 1 cut(s) 546
BciVI GTATCC 2 cut(s) 344, 576
BcnI CCSGG 1 cut(s) 505
BfaI CTAG 2 cut(s) 387, 619
BfuI GTATCC 2 cut(s) 344, 576
BisI GCNGC 6 cut(s) 132, 135, 138, 159, 272, 459
BlsI GCNGC 6 cut(s) 133, 136, 139, 160, 273, 460
Bme1390I CCNGG 2 cut(s) 505, 546
BmeT110I CYCGRG 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 481
BmiI GGNNCC 1 cut(s) 502
BmrFI CCNGG 2 cut(s) 505, 546
BmsI GCATC 3 cut(s) 325, 460, 562
BpiI GAAGAC 2 cut(s) 318, 545
BplI GAGNNNNNCTC 2 cut(s) 95, 127
BpmI CTGGAG 1 cut(s) 366
Bpu10I CCTNAGC 1 cut(s) 141
BpuMI CCSGG 1 cut(s) 505
BsaJI CCNNGG 1 cut(s) 504
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 127
BseBI CCWGG 1 cut(s) 546
BseDI CCNNGG 1 cut(s) 504
BseLI CCNNNNNNNGG 2 cut(s) 17, 127
BseMII CTCAG 1 cut(s) 155
BseRI GAGGAG 3 cut(s) 30, 300, 435
BseXI GCAGC 3 cut(s) 124, 258, 470
BseYI CCCAGC 1 cut(s) 496
BshFI GGCC 2 cut(s) 131, 146
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 2 cut(s) 147, 504
BslI CCNNNNNNNGG 2 cut(s) 17, 127
BsnI GGCC 2 cut(s) 131, 146
BsoBI CYCGRG 1 cut(s) 209
Bsp143I GATC 1 cut(s) 612
BspACI CCGC 4 cut(s) 132, 135, 159, 171
BspANI GGCC 2 cut(s) 131, 146
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 502
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 1 cut(s) 612
Bst2UI CCWGG 1 cut(s) 546
Bst4CI ACNGT 1 cut(s) 80
Bst6I CTCTTC 1 cut(s) 401
BstDEI CTNAG 3 cut(s) 141, 277, 576
BstEII GGTNACC 1 cut(s) 251
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 1 cut(s) 615
BstMBI GATC 1 cut(s) 612
BstMWI GCNNNNNNNGC 2 cut(s) 137, 143
BstNI CCWGG 1 cut(s) 546
BstNSI RCATGY 2 cut(s) 243, 476
BstPI GGTNACC 1 cut(s) 251
BstSCI CCNGG 2 cut(s) 503, 544
BstV1I GCAGC 3 cut(s) 124, 258, 470
BstV2I GAAGAC 2 cut(s) 318, 545
BsuI GTATCC 2 cut(s) 344, 576
BsuRI GGCC 2 cut(s) 131, 146
BtrI CACGTC 1 cut(s) 481
BtsIMutI CAGTG 1 cut(s) 567
CfoI GCGC 1 cut(s) 168
CsiI ACCWGGT 1 cut(s) 544
Csp6I GTAC 1 cut(s) 365
CviAII CATG 3 cut(s) 240, 332, 473
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 3 cut(s) 141, 277, 576
DpnI GATC 1 cut(s) 614
DpnII GATC 1 cut(s) 612
DraI TTTAAA 1 cut(s) 564
DraIII CACNNNGTG 1 cut(s) 548
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 401
EarI CTCTTC 1 cut(s) 401
Eco88I CYCGRG 1 cut(s) 209
Eco91I GGTNACC 1 cut(s) 251
EcoO65I GGTNACC 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 544
FaeI CATG 3 cut(s) 243, 335, 476
FaiI YATR 8 cut(s) 241, 247, 249, 296, 333, 431, 474, 534
FatI CATG 3 cut(s) 239, 331, 472
Fnu4HI GCNGC 6 cut(s) 132, 135, 138, 159, 272, 459
Fsp4HI GCNGC 6 cut(s) 132, 135, 138, 159, 272, 459
FspBI CTAG 2 cut(s) 387, 619
FspI TGCGCA 1 cut(s) 167
GlaI GCGC 1 cut(s) 167
GluI GCNGC 6 cut(s) 132, 135, 138, 159, 272, 459
GsaI CCCAGC 1 cut(s) 500
GsuI CTGGAG 1 cut(s) 366
HaeIII GGCC 2 cut(s) 131, 146
HapII CCGG 2 cut(s) 147, 504
HhaI GCGC 1 cut(s) 168
Hin1II CATG 3 cut(s) 243, 335, 476
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HincII GTYRAC 3 cut(s) 49, 85, 478
HindII GTYRAC 3 cut(s) 49, 85, 478
HinfI GANTC 3 cut(s) 98, 195, 221
HpaII CCGG 2 cut(s) 147, 504
HphI GGTGA 6 cut(s) 107, 245, 449, 479, 504, 560
Hpy166II GTNNAC 4 cut(s) 49, 85, 470, 478
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 395
Hpy8I GTNNAC 4 cut(s) 49, 85, 470, 478
HpyAV CCTTC 1 cut(s) 428
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 1 cut(s) 451
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 143
HpyF3I CTNAG 3 cut(s) 141, 277, 576
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 3 cut(s) 243, 335, 476
HspAI GCGC 1 cut(s) 166
Kzo9I GATC 1 cut(s) 612
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 8 cut(s) 128, 160, 330, 408, 482, 517, 531, 558
Lsp1109I GCAGC 3 cut(s) 124, 258, 470
LweI GCATC 3 cut(s) 325, 460, 562
MabI ACCWGGT 1 cut(s) 544
MaeI CTAG 2 cut(s) 387, 619
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 2 cut(s) 122, 251
MalI GATC 1 cut(s) 614
MboI GATC 1 cut(s) 612
MboII GAAGA 7 cut(s) 47, 50, 53, 323, 418, 550, 602
MluCI AATT 3 cut(s) 181, 321, 551
MlyI GAGTC 2 cut(s) 204, 215
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 1 cut(s) 563
MslI CAYNNNNRTG 1 cut(s) 120
MspA1I CMGCKG 2 cut(s) 137, 271
MspI CCGG 2 cut(s) 147, 504
MspR9I CCNGG 2 cut(s) 505, 546
MvaI CCWGG 1 cut(s) 546
MwoI GCNNNNNNNGC 2 cut(s) 137, 143
NciI CCSGG 1 cut(s) 505
NdeII GATC 1 cut(s) 612
NlaIII CATG 3 cut(s) 243, 335, 476
NlaIV GGNNCC 1 cut(s) 502
NmeAIII GCCGAG 2 cut(s) 203, 407
NmuCI GTSAC 2 cut(s) 122, 251
NsbI TGCGCA 1 cut(s) 167
NspI RCATGY 2 cut(s) 243, 476
OliI CACNNNNGTG 1 cut(s) 120
PaeR7I CTCGAG 1 cut(s) 209
PciI ACATGT 1 cut(s) 472
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 6 cut(s) 133, 136, 139, 160, 273, 460
PleI GAGTC 2 cut(s) 203, 215
PpsI GAGTC 2 cut(s) 203, 215
PscI ACATGT 1 cut(s) 472
Psp6I CCWGG 1 cut(s) 544
PspEI GGTNACC 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 496
PspGI CCWGG 1 cut(s) 544
PspN4I GGNNCC 1 cut(s) 502
PspXI VCTCGAGB 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 271
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
RseI CAYNNNNRTG 1 cut(s) 120
SaqAI TTAA 1 cut(s) 563
SatI GCNGC 6 cut(s) 132, 135, 138, 159, 272, 459
Sau3AI GATC 1 cut(s) 612
SchI GAGTC 2 cut(s) 204, 215
ScrFI CCNGG 2 cut(s) 505, 546
SexAI ACCWGGT 1 cut(s) 544
SfaNI GCATC 3 cut(s) 325, 460, 562
Sfr274I CTCGAG 1 cut(s) 209
SlaI CTCGAG 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 120
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 3 cut(s) 181, 321, 551
SsiI CCGC 4 cut(s) 132, 135, 159, 171
SspMI CTAG 2 cut(s) 387, 619
StyD4I CCNGG 2 cut(s) 503, 544
TaaI ACNGT 1 cut(s) 80
TaiI ACGT 1 cut(s) 483
TaqI TCGA 4 cut(s) 177, 198, 210, 588
TasI AATT 3 cut(s) 181, 321, 551
TatI WGTACW 1 cut(s) 364
TauI GCSGC 3 cut(s) 134, 137, 161
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 1 cut(s) 563
Tru9I TTAA 1 cut(s) 563
TscAI CASTG 1 cut(s) 574
TseFI GTSAC 2 cut(s) 122, 251
TseI GCWGC 3 cut(s) 137, 271, 458
Tsp45I GTSAC 2 cut(s) 122, 251
TspDTI ATGAA 2 cut(s) 48, 324
TspGWI ACGGA 2 cut(s) 66, 110
TspRI CASTG 1 cut(s) 574
XceI RCATGY 2 cut(s) 243, 476
XhoI CTCGAG 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 2 cut(s) 387, 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.