Rroxscaffold_6G00410490

ankyrin repeat family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0014540
Physical Location & Seq
Reverse (-)
32915750 .. 32917395
1646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00410490.1

Sequence Viewer

Length: 699 bp
ATGGCGGTTCCGGGCAGGGGTTTAGTGGAGGCTGACGACAACGATGACGAAAACGCTCTCTTTGAAGAAGAGGGTTTGGAGGACCTCGACTCTCACGCGCCTCCTCACCTACGCGCCATCGCAGACGCCACTCAGCTCGGCGACCTTGACGCCCTCCGACTCGCTCTCGATAACTTAGAAGGCAGTATTGACGAACCAGTGGAAGATGGGGATACAGCTCTGCATCTGGCTTGTCTCTATGGTAAACTTTCTTGTGTCCAGTTGCTTTTGGAGAGGGGGGCAAACTTGGAGGCTAAGGATGAAGATGGAGCTATTCCTCTGCATGATGCTTGTGCTGGGGGATACACTGAGATAGTTCAACTTCTAGTTAACAGTGCTAATGACACCGAGCGTGTAAAGAGAATGCTAGAAGCAGTTGACGCTGAAGGTGATACTGAATTTCAATTGGTGAAAAAACATTTCTTGAATATCCCAAGAACTGTATTCGAAGTGGTGATGTGGCCTTTCTTATCTATTCCACAGCCTCTACATCATGCAGCCAGAGGTGAGCATGCTGATATTATAAGATTGTTGCTGGCTTCTGGAGCTTCTCCTACAAGGGCAAACCTCTATGGAAAGATCCCAAGTGAGTTACCAGAACCGAACACAGAAGCTAAGGGGATTTTGGAGGCTGCTGCTGGTGCTATGGCATGCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5

Protein Analysis

232

Amino Acids

24.99

Weight (kDa)

4.41

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 43 - 127 4.2e-15 Ankyrin repeats (3 copies)
Ank_4 PF13637 46 - 90 1.5e-06 Ankyrin repeats (many copies)
Ank_5 PF13857 68 - 107 9.3e-08 Ankyrin repeats (many copies)
Ank PF00023 69 - 100 1.7e-09 Ankyrin repeat
Ank_4 PF13637 75 - 123 2.3e-08 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09890 AT3G09890
fragaria_vesca FvH4_6g16830
malus_domestica MD12G1106800.v1.1
prunus_persica Prupe.7G125700_v2.0.a1
pyrus_communis pycom12g10730
rosa_chinensis RchiOBHm_Chr3g0470841
rosa_laevigata RLG00000024241
rosa_multiflora Rmu_co8290787.1_g000001 Rmu_sc0002790.1_g000024
rosa_roxburghii Rroxscaffold_6G00410490
rosa_rugosa Rorug03G0113100
rosa_samantha Rh3AG162800 Rh3BG187900 Rh3CG177900 Rh3DG187900
rosa_wichuraiana Rw3G015330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 563
AccII CGCG 2 cut(s) 98, 114
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 613
AcsI RAATTY 1 cut(s) 437
AcuI CTGAAG 1 cut(s) 444
AcyI GRCGYC 2 cut(s) 126, 150
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 4 cut(s) 65, 359, 443, 466
AluBI AGCT 5 cut(s) 136, 218, 311, 587, 653
AluI AGCT 5 cut(s) 136, 218, 311, 587, 653
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 1 cut(s) 613
AoxI GGCC 1 cut(s) 500
ApeKI GCWGC 3 cut(s) 536, 671, 674
ApoI RAATTY 1 cut(s) 437
AspLEI GCGC 2 cut(s) 100, 116
AspS9I GGNCC 1 cut(s) 82
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 5 cut(s) 98, 440, 460, 505, 557
AsuII TTCGAA 1 cut(s) 486
AvaII GGWCC 1 cut(s) 82
BbvI GCAGC 3 cut(s) 548, 658, 661
BccI CCATC 3 cut(s) 125, 200, 299
BciVI GTATCC 2 cut(s) 205, 335
BcnI CCSGG 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 2 cut(s) 365, 407
BfuI GTATCC 2 cut(s) 205, 335
BisI GCNGC 3 cut(s) 537, 672, 675
BlsI GCNGC 3 cut(s) 538, 673, 676
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 2 cut(s) 232, 316
BpmI CTGGAG 1 cut(s) 603
Bpu10I CCTNAGC 2 cut(s) 294, 654
Bpu14I TTCGAA 1 cut(s) 486
BpuMI CCSGG 1 cut(s) 12
BsaHI GRCGYC 2 cut(s) 126, 150
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse1I ACTGG 2 cut(s) 197, 259
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMII CTCAG 2 cut(s) 146, 339
BseNI ACTGG 2 cut(s) 197, 259
BseRI GAGGAG 1 cut(s) 93
BseXI GCAGC 3 cut(s) 548, 658, 661
BseYI CCCAGC 1 cut(s) 335
Bsh1236I CGCG 2 cut(s) 98, 114
BshFI GGCC 1 cut(s) 502
BsiSI CCGG 1 cut(s) 11
BslI CCNNNNNNNGG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 239
BsmI GAATGC 1 cut(s) 408
BsnI GGCC 1 cut(s) 502
Bsp119I TTCGAA 1 cut(s) 486
Bsp143I GATC 1 cut(s) 618
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 502
BspCNI CTCAG 2 cut(s) 145, 340
BspFNI CGCG 2 cut(s) 98, 114
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 1 cut(s) 613
BspT104I TTCGAA 1 cut(s) 486
BsrI ACTGG 2 cut(s) 197, 259
BssMI GATC 1 cut(s) 618
BssNI GRCGYC 2 cut(s) 126, 150
Bst4CI ACNGT 2 cut(s) 374, 481
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 2 cut(s) 126, 150
BstBI TTCGAA 1 cut(s) 486
BstC8I GCNNGC 3 cut(s) 552, 576, 691
BstDEI CTNAG 5 cut(s) 132, 175, 294, 348, 654
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 2 cut(s) 98, 114
BstHHI GCGC 2 cut(s) 100, 116
BstKTI GATC 1 cut(s) 621
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 1 cut(s) 618
BstMWI GCNNNNNNNGC 3 cut(s) 419, 584, 680
BstNSI RCATGY 2 cut(s) 554, 693
BstSCI CCNGG 1 cut(s) 10
BstUI CGCG 2 cut(s) 98, 114
BstV1I GCAGC 3 cut(s) 548, 658, 661
BstX2I RGATCY 1 cut(s) 618
BstYI RGATCY 1 cut(s) 618
BsuI GTATCC 2 cut(s) 205, 335
BsuRI GGCC 1 cut(s) 502
BtgZI GCGATG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 304
BtsIMutI CAGTG 3 cut(s) 204, 345, 379
Cac8I GCNNGC 3 cut(s) 552, 576, 691
CfoI GCGC 2 cut(s) 100, 116
Cfr13I GGNCC 1 cut(s) 82
CseI GACGC 3 cut(s) 134, 158, 428
CviAII CATG 4 cut(s) 323, 533, 551, 690
DdeI CTNAG 5 cut(s) 132, 175, 294, 348, 654
DpnI GATC 1 cut(s) 620
DpnII GATC 1 cut(s) 618
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 444
EcoO109I RGGNCCY 1 cut(s) 82
FaeI CATG 4 cut(s) 326, 536, 554, 693
FaiI YATR 8 cut(s) 240, 324, 534, 552, 563, 612, 686, 691
FatI CATG 4 cut(s) 322, 532, 550, 689
Fnu4HI GCNGC 3 cut(s) 537, 672, 675
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 3 cut(s) 537, 672, 675
FspBI CTAG 2 cut(s) 365, 407
GlaI GCGC 2 cut(s) 99, 115
GluI GCNGC 3 cut(s) 537, 672, 675
GsaI CCCAGC 1 cut(s) 339
GsuI CTGGAG 1 cut(s) 603
HaeIII GGCC 1 cut(s) 502
HapII CCGG 1 cut(s) 11
HgaI GACGC 3 cut(s) 134, 158, 428
HhaI GCGC 2 cut(s) 100, 116
Hin1I GRCGYC 2 cut(s) 126, 150
Hin1II CATG 4 cut(s) 326, 536, 554, 693
Hin6I GCGC 2 cut(s) 98, 114
HinP1I GCGC 2 cut(s) 98, 114
HincII GTYRAC 2 cut(s) 370, 418
HindII GTYRAC 2 cut(s) 370, 418
HinfI GANTC 2 cut(s) 89, 159
HpaI GTTAAC 1 cut(s) 370
HpaII CCGG 1 cut(s) 11
HphI GGTGA 5 cut(s) 98, 440, 460, 505, 557
Hpy166II GTNNAC 3 cut(s) 245, 370, 418
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 3 cut(s) 167, 463, 582
Hpy8I GTNNAC 3 cut(s) 245, 370, 418
HpyAV CCTTC 2 cut(s) 173, 419
HpyCH4III ACNGT 2 cut(s) 374, 481
HpyCH4V TGCA 3 cut(s) 223, 322, 536
HpyF10VI GCNNNNNNNGC 3 cut(s) 419, 584, 680
HpyF3I CTNAG 5 cut(s) 132, 175, 294, 348, 654
Hsp92I GRCGYC 2 cut(s) 126, 150
Hsp92II CATG 4 cut(s) 326, 536, 554, 693
HspAI GCGC 2 cut(s) 98, 114
KspAI GTTAAC 1 cut(s) 370
Kzo9I GATC 1 cut(s) 618
LmnI GCTCC 2 cut(s) 308, 584
Lsp1109I GCAGC 3 cut(s) 548, 658, 661
LweI GCATC 2 cut(s) 232, 316
MaeI CTAG 2 cut(s) 365, 407
MaeIII GTNAC 1 cut(s) 630
MalI GATC 1 cut(s) 620
MboI GATC 1 cut(s) 618
MboII GAAGA 4 cut(s) 77, 80, 215, 314
MfeI CAATTG 1 cut(s) 443
MflI RGATCY 1 cut(s) 618
MluCI AATT 2 cut(s) 437, 443
MlyI GAGTC 2 cut(s) 83, 153
MmeI TCCRAC 1 cut(s) 181
MseI TTAA 1 cut(s) 369
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 12
MunI CAATTG 1 cut(s) 443
Mva1269I GAATGC 1 cut(s) 408
MvnI CGCG 2 cut(s) 98, 114
MwoI GCNNNNNNNGC 3 cut(s) 419, 584, 680
NciI CCSGG 1 cut(s) 12
NdeII GATC 1 cut(s) 618
NlaIII CATG 4 cut(s) 326, 536, 554, 693
NlaIV GGNNCC 1 cut(s) 9
NmeAIII GCCGAG 1 cut(s) 117
NspI RCATGY 2 cut(s) 554, 693
NspV TTCGAA 1 cut(s) 486
PaeI GCATGC 2 cut(s) 554, 693
PctI GAATGC 1 cut(s) 408
PkrI GCNGC 3 cut(s) 538, 673, 676
PleI GAGTC 2 cut(s) 83, 153
PpsI GAGTC 2 cut(s) 83, 153
PpuMI RGGWCCY 1 cut(s) 82
PsiI TTATAA 1 cut(s) 563
Psp5II RGGWCCY 1 cut(s) 82
PspFI CCCAGC 1 cut(s) 335
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 82
PspPPI RGGWCCY 1 cut(s) 82
PsuI RGATCY 1 cut(s) 618
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 3 cut(s) 537, 672, 675
Sau3AI GATC 1 cut(s) 618
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 2 cut(s) 83, 153
ScrFI CCNGG 1 cut(s) 12
SfaNI GCATC 2 cut(s) 232, 316
SfuI TTCGAA 1 cut(s) 486
SinI GGWCC 1 cut(s) 82
SphI GCATGC 2 cut(s) 554, 693
Sse9I AATT 2 cut(s) 437, 443
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 365, 407
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 2 cut(s) 374, 481
TaqI TCGA 3 cut(s) 87, 168, 486
TasI AATT 2 cut(s) 437, 443
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 3 cut(s) 204, 352, 379
TseI GCWGC 3 cut(s) 536, 671, 674
TspDTI ATGAA 1 cut(s) 315
TspRI CASTG 3 cut(s) 204, 352, 379
VpaK11BI GGWCC 1 cut(s) 82
XapI RAATTY 1 cut(s) 437
XceI RCATGY 2 cut(s) 554, 693
XspI CTAG 2 cut(s) 365, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.