Rh3CG177900

ankyrin repeat family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0014540
Physical Location & Seq
Forward (+)
15631325 .. 15633634
2310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG177900.1

Sequence Viewer

Length: 474 bp
ATGGCGGTTCCGGGCAGGGGTTTAGTGGAGGCTGACGACAACGATGACGAAAACGCTCTCTTTGAAGAAGAGGGTTTGGAGGACCTCGACTCTCACGCGCCTCCTCACCTACGCGCCATCGCTGACGCCACTCAGCTCGGCGACCTCGACGCCCTCCGACTCGCTCTCGATAACTTAGAAGGCAGTATTGATGAACCAGTGGAAGATGGGGACACAGCTCTGCATCTGGCTTGTCTCTATGGTAAACTTTCTTGTGTCCAGTTGCTTTTGGAGAGGGGGGCAAACTTGGAGGCTAAGGATGAAGATGGAGCTATTCCTCTGCATGATGCTTGTGCTGGGGGATACACTGAGATAGTTCAACTTCTAGTTAACAGTGCTAATGACACCGAGCGTGTAAAGAGAATGCTAGAAGCAGTTGACGCTGAAGGTGATACTGTGAGTATAATTAATCACACCCTTCTTCTGTTTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5

Protein Analysis

157

Amino Acids

16.89

Weight (kDa)

4.06

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 43 - 127 1.9e-15 Ankyrin repeats (3 copies)
Ank_4 PF13637 46 - 90 7.4e-07 Ankyrin repeats (many copies)
Ank_5 PF13857 68 - 107 4.5e-08 Ankyrin repeats (many copies)
Ank PF00023 69 - 100 9.1e-10 Ankyrin repeat
Ank_3 PF13606 69 - 97 6.4e-06 Ankyrin repeat
Ank_4 PF13637 75 - 123 1.1e-08 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09890 AT3G09890
fragaria_vesca FvH4_6g16830
malus_domestica MD12G1106800.v1.1
prunus_persica Prupe.7G125700_v2.0.a1
pyrus_communis pycom12g10730
rosa_chinensis RchiOBHm_Chr3g0470841
rosa_laevigata RLG00000024241
rosa_multiflora Rmu_co8290787.1_g000001 Rmu_sc0002790.1_g000024
rosa_roxburghii Rroxscaffold_6G00410490
rosa_rugosa Rorug03G0113100
rosa_samantha Rh3AG162800 Rh3BG187900 Rh3CG177900 Rh3DG187900
rosa_wichuraiana Rw3G015330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 98, 114
AciI CCGC 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 444
AcyI GRCGYC 2 cut(s) 126, 150
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 2 cut(s) 65, 359
AluBI AGCT 3 cut(s) 136, 218, 311
AluI AGCT 3 cut(s) 136, 218, 311
Alw26I GTCTC 1 cut(s) 239
AseI ATTAAT 1 cut(s) 447
AspLEI GCGC 2 cut(s) 100, 116
AspS9I GGNCC 1 cut(s) 82
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 2 cut(s) 98, 440
AvaII GGWCC 1 cut(s) 82
BccI CCATC 3 cut(s) 125, 200, 299
BciVI GTATCC 1 cut(s) 335
BcnI CCSGG 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 3 cut(s) 365, 407, 472
BfuI GTATCC 1 cut(s) 335
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 2 cut(s) 232, 316
Bpu10I CCTNAGC 1 cut(s) 294
BpuMI CCSGG 1 cut(s) 12
BsaHI GRCGYC 2 cut(s) 126, 150
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse1I ACTGG 2 cut(s) 197, 259
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMII CTCAG 2 cut(s) 146, 339
BseNI ACTGG 2 cut(s) 197, 259
BseRI GAGGAG 1 cut(s) 93
BseYI CCCAGC 1 cut(s) 335
Bsh1236I CGCG 2 cut(s) 98, 114
BsiSI CCGG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 224
BsmI GAATGC 1 cut(s) 408
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 145, 340
BspFNI CGCG 2 cut(s) 98, 114
BspLI GGNNCC 1 cut(s) 9
BsrI ACTGG 2 cut(s) 197, 259
BssNI GRCGYC 2 cut(s) 126, 150
Bst4CI ACNGT 2 cut(s) 374, 436
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 2 cut(s) 126, 150
BstDEI CTNAG 4 cut(s) 132, 175, 294, 348
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 2 cut(s) 98, 114
BstHHI GCGC 2 cut(s) 100, 116
BstMAI GTCTC 1 cut(s) 239
BstMWI GCNNNNNNNGC 1 cut(s) 419
BstSCI CCNGG 1 cut(s) 10
BstUI CGCG 2 cut(s) 98, 114
BsuI GTATCC 1 cut(s) 335
BtgZI GCGATG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 304
BtsIMutI CAGTG 3 cut(s) 204, 345, 379
CfoI GCGC 2 cut(s) 100, 116
Cfr13I GGNCC 1 cut(s) 82
CseI GACGC 3 cut(s) 134, 158, 428
CviAII CATG 1 cut(s) 323
CviJI RGCY 6 cut(s) 32, 136, 218, 230, 293, 311
CviKI_1 RGCY 6 cut(s) 32, 136, 218, 230, 293, 311
DdeI CTNAG 4 cut(s) 132, 175, 294, 348
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 444
EcoO109I RGGNCCY 1 cut(s) 82
FaeI CATG 1 cut(s) 326
FaiI YATR 3 cut(s) 240, 324, 443
FaqI GGGAC 1 cut(s) 224
FatI CATG 1 cut(s) 322
FokI GGATG 1 cut(s) 311
FspBI CTAG 3 cut(s) 365, 407, 472
GlaI GCGC 2 cut(s) 99, 115
GsaI CCCAGC 1 cut(s) 339
HapII CCGG 1 cut(s) 11
HgaI GACGC 3 cut(s) 134, 158, 428
HhaI GCGC 2 cut(s) 100, 116
Hin1I GRCGYC 2 cut(s) 126, 150
Hin1II CATG 1 cut(s) 326
Hin6I GCGC 2 cut(s) 98, 114
HinP1I GCGC 2 cut(s) 98, 114
HincII GTYRAC 2 cut(s) 370, 418
HindII GTYRAC 2 cut(s) 370, 418
HinfI GANTC 2 cut(s) 89, 159
HpaI GTTAAC 1 cut(s) 370
HpaII CCGG 1 cut(s) 11
HphI GGTGA 2 cut(s) 98, 440
Hpy166II GTNNAC 3 cut(s) 245, 370, 418
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 3 cut(s) 245, 370, 418
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 3 cut(s) 173, 419, 467
HpyCH4III ACNGT 2 cut(s) 374, 436
HpyCH4V TGCA 2 cut(s) 223, 322
HpyF10VI GCNNNNNNNGC 1 cut(s) 419
HpyF3I CTNAG 4 cut(s) 132, 175, 294, 348
Hsp92I GRCGYC 2 cut(s) 126, 150
Hsp92II CATG 1 cut(s) 326
HspAI GCGC 2 cut(s) 98, 114
KspAI GTTAAC 1 cut(s) 370
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 5 cut(s) 24, 210, 212, 272, 321
LweI GCATC 2 cut(s) 232, 316
MaeI CTAG 3 cut(s) 365, 407, 472
MboII GAAGA 5 cut(s) 77, 80, 215, 314, 452
MluCI AATT 1 cut(s) 444
MlyI GAGTC 2 cut(s) 83, 153
MmeI TCCRAC 1 cut(s) 181
MseI TTAA 2 cut(s) 369, 447
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 408
MvnI CGCG 2 cut(s) 98, 114
MwoI GCNNNNNNNGC 1 cut(s) 419
NciI CCSGG 1 cut(s) 12
NlaIII CATG 1 cut(s) 326
NlaIV GGNNCC 1 cut(s) 9
NmeAIII GCCGAG 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PctI GAATGC 1 cut(s) 408
PleI GAGTC 2 cut(s) 83, 153
PpsI GAGTC 2 cut(s) 83, 153
PpuMI RGGWCCY 1 cut(s) 82
PshBI ATTAAT 1 cut(s) 447
Psp5II RGGWCCY 1 cut(s) 82
PspFI CCCAGC 1 cut(s) 335
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 82
PspPPI RGGWCCY 1 cut(s) 82
SaqAI TTAA 2 cut(s) 369, 447
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 2 cut(s) 83, 153
ScrFI CCNGG 1 cut(s) 12
SetI ASST 7 cut(s) 87, 111, 138, 147, 220, 313, 430
SfaNI GCATC 2 cut(s) 232, 316
SinI GGWCC 1 cut(s) 82
Sse9I AATT 1 cut(s) 444
SsiI CCGC 1 cut(s) 5
SspMI CTAG 3 cut(s) 365, 407, 472
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 2 cut(s) 374, 436
TaqI TCGA 3 cut(s) 87, 147, 168
TasI AATT 1 cut(s) 444
Tru1I TTAA 2 cut(s) 369, 447
Tru9I TTAA 2 cut(s) 369, 447
TscAI CASTG 3 cut(s) 204, 352, 379
TspDTI ATGAA 2 cut(s) 207, 315
TspRI CASTG 3 cut(s) 204, 352, 379
VpaK11BI GGWCC 1 cut(s) 82
VspI ATTAAT 1 cut(s) 447
XspI CTAG 3 cut(s) 365, 407, 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.