FvH4_6g16830

ankyrin repeat family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014540
Physical Location & Seq
Forward (+)
10745661 .. 10747073
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16830.t1

Sequence Viewer

Length: 612 bp
ATGGCGGTTCCGGGCAGAGGTCTAGCGGAGGCTGACGACAACGATGAAGAAAACGCTCTCTTTGAAGAAGAGGGTTTGGAGGACCTTGACTCTCACGCGCCTCCTCATCTACGCGCCATCGCAGACGCCACTCAGCTCGGCGACGTCGACGCCCTCCGACTCGCTCTCGATAACTTGGAAGGCAGTATTGATGAACCGGTGGAAGATGGGGACACAGCTCTGCATCTGGCTTGTCTCTATGGTAAACTTTCTTGTGTCCAGTTGCTTTTGGAGAGAGGGGCAAATTTGGAGGCCAAGGATGAAGATGGAGCTATTCCTCTGCATGATGCTTGTGCTGGGGGATACACTGAGATAGTTCAACTTCTAATGAACAGTGCTAATGACACCGAGTGTGTCAAGAGAATGCTAGAAGCAGTTGACGCTGAAGGTGATACTCCTCTGCACCATGCAGCCAGAGGTGAGCATGCTGATATTATAAGATTGTTGCTGACTTCTGGAGCTTCTCCTACAAAGGCAAACCTGTATGGAAAGATTCCAAGTGAGTTACCAGAACTGAACACAGAAGCTAAGGGGATTTTAGAGGCTGCTGCTGGTGCTATGCAATGCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5

Protein Analysis

204

Amino Acids

21.49

Weight (kDa)

4.24

Isoelectric Point (pI)

31.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 43 - 125 1.2e-14 Ankyrin repeats (3 copies)
Ank_4 PF13637 46 - 90 2.3e-06 Ankyrin repeats (many copies)
Ank_5 PF13857 68 - 107 7.4e-08 Ankyrin repeats (many copies)
Ank PF00023 69 - 100 1.4e-09 Ankyrin repeat
Ank_3 PF13606 69 - 97 9.7e-06 Ankyrin repeat
Ank_KRIT1 PF24521 71 - 182 7.6e-07 KRIT1 ankyrin-repeats domain
Ank_4 PF13637 75 - 122 4e-08 Ankyrin repeats (many copies)
Ank_2 PF12796 126 - 171 3.6e-08 Ankyrin repeats (3 copies)
Ank_4 PF13637 126 - 163 3.7e-06 Ankyrin repeats (many copies)
Ank PF00023 143 - 173 2.5e-07 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09890 AT3G09890
fragaria_vesca FvH4_6g16830
malus_domestica MD12G1106800.v1.1
prunus_persica Prupe.7G125700_v2.0.a1
pyrus_communis pycom12g10730
rosa_chinensis RchiOBHm_Chr3g0470841
rosa_laevigata RLG00000024241
rosa_multiflora Rmu_co8290787.1_g000001 Rmu_sc0002790.1_g000024
rosa_roxburghii Rroxscaffold_6G00410490
rosa_rugosa Rorug03G0113100
rosa_samantha Rh3AG162800 Rh3BG187900 Rh3CG177900 Rh3DG187900
rosa_wichuraiana Rw3G015330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 476
AatII GACGTC 1 cut(s) 147
AccI GTMKAC 1 cut(s) 147
AccII CGCG 2 cut(s) 98, 114
AciI CCGC 2 cut(s) 5, 26
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 1 cut(s) 444
AcyI GRCGYC 3 cut(s) 126, 144, 150
AdeI CACNNNGTG 1 cut(s) 390
AfiI CCNNNNNNNGG 1 cut(s) 17
AgeI ACCGGT 1 cut(s) 196
AgsI TTSAA 2 cut(s) 65, 359
AluBI AGCT 5 cut(s) 136, 218, 311, 500, 566
AluI AGCT 5 cut(s) 136, 218, 311, 500, 566
Alw26I GTCTC 1 cut(s) 239
AoxI GGCC 1 cut(s) 291
ApeKI GCWGC 3 cut(s) 449, 584, 587
ApoI RAATTY 1 cut(s) 283
AsiGI ACCGGT 1 cut(s) 196
AspLEI GCGC 2 cut(s) 100, 116
AspS9I GGNCC 1 cut(s) 82
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 2 cut(s) 440, 470
AvaII GGWCC 1 cut(s) 82
BbvI GCAGC 3 cut(s) 461, 571, 574
BccI CCATC 3 cut(s) 125, 200, 299
BciVI GTATCC 1 cut(s) 335
BcnI CCSGG 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 2 cut(s) 23, 407
BfuI GTATCC 1 cut(s) 335
BisI GCNGC 3 cut(s) 450, 585, 588
BlsI GCNGC 3 cut(s) 451, 586, 589
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 2 cut(s) 232, 316
BpmI CTGGAG 1 cut(s) 516
Bpu10I CCTNAGC 1 cut(s) 567
BpuMI CCSGG 1 cut(s) 12
BsaHI GRCGYC 3 cut(s) 126, 144, 150
BsaJI CCNNGG 1 cut(s) 294
BsaWI WCCGGW 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse118I RCCGGY 1 cut(s) 196
Bse1I ACTGG 2 cut(s) 259, 607
Bse3DI GCAATG 1 cut(s) 608
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMI GCAATG 1 cut(s) 608
BseMII CTCAG 2 cut(s) 146, 339
BseNI ACTGG 2 cut(s) 259, 607
BseRI GAGGAG 2 cut(s) 93, 426
BseXI GCAGC 3 cut(s) 461, 571, 574
BseYI CCCAGC 1 cut(s) 335
BsgI GTGCAG 1 cut(s) 425
Bsh1236I CGCG 2 cut(s) 98, 114
BshFI GGCC 1 cut(s) 293
BshTI ACCGGT 1 cut(s) 196
BsiSI CCGG 2 cut(s) 11, 197
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 224
BsmI GAATGC 1 cut(s) 408
BsnI GGCC 1 cut(s) 293
BspACI CCGC 2 cut(s) 5, 26
BspANI GGCC 1 cut(s) 293
BspCNI CTCAG 2 cut(s) 145, 340
BspFNI CGCG 2 cut(s) 98, 114
BspLI GGNNCC 1 cut(s) 9
BsrDI GCAATG 1 cut(s) 608
BsrFI RCCGGY 1 cut(s) 196
BsrI ACTGG 2 cut(s) 259, 607
BssAI RCCGGY 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 294
BssNI GRCGYC 3 cut(s) 126, 144, 150
BssT1I CCWWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 374
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 3 cut(s) 126, 144, 150
BstC8I GCNNGC 1 cut(s) 465
BstDEI CTNAG 3 cut(s) 132, 348, 567
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 2 cut(s) 98, 114
BstHHI GCGC 2 cut(s) 100, 116
BstMAI GTCTC 1 cut(s) 239
BstMWI GCNNNNNNNGC 2 cut(s) 419, 593
BstNSI RCATGY 1 cut(s) 467
BstSCI CCNGG 1 cut(s) 10
BstUI CGCG 2 cut(s) 98, 114
BstV1I GCAGC 3 cut(s) 461, 571, 574
BsuI GTATCC 1 cut(s) 335
BsuRI GGCC 1 cut(s) 293
BtgZI GCGATG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 345, 379
Cac8I GCNNGC 1 cut(s) 465
CfoI GCGC 2 cut(s) 100, 116
Cfr10I RCCGGY 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 82
CseI GACGC 3 cut(s) 134, 158, 428
CspAI ACCGGT 1 cut(s) 196
CviAII CATG 3 cut(s) 323, 446, 464
DdeI CTNAG 3 cut(s) 132, 348, 567
DraIII CACNNNGTG 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 444
EcoO109I RGGNCCY 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 3 cut(s) 326, 449, 467
FaiI YATR 7 cut(s) 240, 324, 447, 465, 476, 525, 599
FaqI GGGAC 1 cut(s) 224
FatI CATG 3 cut(s) 322, 445, 463
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 3 cut(s) 450, 585, 588
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 3 cut(s) 450, 585, 588
FspBI CTAG 2 cut(s) 23, 407
GlaI GCGC 2 cut(s) 99, 115
GluI GCNGC 3 cut(s) 450, 585, 588
GsaI CCCAGC 1 cut(s) 339
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 1 cut(s) 293
HapII CCGG 2 cut(s) 11, 197
HgaI GACGC 3 cut(s) 134, 158, 428
HhaI GCGC 2 cut(s) 100, 116
Hin1I GRCGYC 3 cut(s) 126, 144, 150
Hin1II CATG 3 cut(s) 326, 449, 467
Hin6I GCGC 2 cut(s) 98, 114
HinP1I GCGC 2 cut(s) 98, 114
HincII GTYRAC 2 cut(s) 148, 418
HindII GTYRAC 2 cut(s) 148, 418
HinfI GANTC 3 cut(s) 89, 159, 532
HpaII CCGG 2 cut(s) 11, 197
HphI GGTGA 2 cut(s) 440, 470
Hpy166II GTNNAC 3 cut(s) 148, 245, 418
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 3 cut(s) 167, 397, 495
Hpy8I GTNNAC 3 cut(s) 148, 245, 418
Hpy99I CGWCG 3 cut(s) 146, 149, 152
HpyAV CCTTC 2 cut(s) 173, 419
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 5 cut(s) 223, 322, 442, 449, 601
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 593
HpyF3I CTNAG 3 cut(s) 132, 348, 567
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 3 cut(s) 126, 144, 150
Hsp92II CATG 3 cut(s) 326, 449, 467
HspAI GCGC 2 cut(s) 98, 114
LmnI GCTCC 2 cut(s) 308, 497
Lsp1109I GCAGC 3 cut(s) 461, 571, 574
LweI GCATC 2 cut(s) 232, 316
MaeI CTAG 2 cut(s) 23, 407
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 543
MboII GAAGA 5 cut(s) 59, 77, 80, 215, 314
MluCI AATT 1 cut(s) 283
MlyI GAGTC 2 cut(s) 83, 153
MmeI TCCRAC 1 cut(s) 181
MspI CCGG 2 cut(s) 11, 197
MspR9I CCNGG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 408
MvnI CGCG 2 cut(s) 98, 114
MwoI GCNNNNNNNGC 2 cut(s) 419, 593
NciI CCSGG 1 cut(s) 12
NlaIII CATG 3 cut(s) 326, 449, 467
NlaIV GGNNCC 1 cut(s) 9
NmeAIII GCCGAG 1 cut(s) 117
NspI RCATGY 1 cut(s) 467
PaeI GCATGC 1 cut(s) 467
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PctI GAATGC 1 cut(s) 408
PfeI GAWTC 1 cut(s) 532
PinAI ACCGGT 1 cut(s) 196
PkrI GCNGC 3 cut(s) 451, 586, 589
PleI GAGTC 2 cut(s) 83, 153
PpsI GAGTC 2 cut(s) 83, 153
PpuMI RGGWCCY 1 cut(s) 82
PsiI TTATAA 1 cut(s) 476
Psp5II RGGWCCY 1 cut(s) 82
PspFI CCCAGC 1 cut(s) 335
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 82
PspPPI RGGWCCY 1 cut(s) 82
SalI GTCGAC 1 cut(s) 146
SatI GCNGC 3 cut(s) 450, 585, 588
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 2 cut(s) 83, 153
ScrFI CCNGG 1 cut(s) 12
SfaNI GCATC 2 cut(s) 232, 316
SgrDI CGTCGACG 1 cut(s) 146
SinI GGWCC 1 cut(s) 82
SphI GCATGC 1 cut(s) 467
Sse9I AATT 1 cut(s) 283
SsiI CCGC 2 cut(s) 5, 26
SspMI CTAG 2 cut(s) 23, 407
StyD4I CCNGG 1 cut(s) 10
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 374
TaiI ACGT 1 cut(s) 147
TaqI TCGA 2 cut(s) 147, 168
TasI AATT 1 cut(s) 283
TfiI GAWTC 1 cut(s) 532
TscAI CASTG 2 cut(s) 352, 379
TseI GCWGC 3 cut(s) 449, 584, 587
TspDTI ATGAA 4 cut(s) 60, 207, 315, 383
TspRI CASTG 2 cut(s) 352, 379
VpaK11BI GGWCC 1 cut(s) 82
XapI RAATTY 1 cut(s) 283
XceI RCATGY 1 cut(s) 467
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 2 cut(s) 23, 407
ZraI GACGTC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.