pycom12g10730

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0014540
Physical Location & Seq
Reverse (-)
12783947 .. 12786694
2748 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g10730.3

Sequence Viewer

Length: 618 bp
ATGGCGGTTCCAGGGCGGAGGAATGGTCTGATGGAGGAGGAGGACAACGAGGACGAAAACGCTCTGTTCGAGGAAGAGGGTTTGGAGGAGCTTGACGCTCAGGCGCCTCCCCACCTTCGCGCCATCGCAGACGCCTCTCAGCAGGGCGACCTCGACGCCCTTCGCCTCGCTCTTGATAACTTAGTAGGCAGCATTGATGATGCAGTGGAAGATGGAGACACAGCTCTCCATCTGGCCTGTCTCTATGGTAATCTTTCTTGTGTCCAGTTACTTTTGGAGAGAGGTGCAAATTTGGAGGCTAAGGATGAAGACGGAGCAATTCCTTTGCATGATGCTTGTGCTGGGGGATACACCGAAGTAGTTCAACTCTTAATTAACAGTGGTAACGATGCTGAGCGTGTAAAGAGAATGCTAGAAACAGTTGATGCCGAAGGTGATACTCCTCTCCATCACGCAGCAAGAGGTGAGCATGCTGATATCATAAGATTGTTGCTGGCTTCTGGAGCTTCACCTACCAAGGCAAACCTATACGGGAAGATCCCAAGTGACTTACCCGAAGCCGACACAGAAGCTAGGAGAATTTTGGAGGCTGCTTCTGCTGCTACGACGTGCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

206

Amino Acids

21.83

Weight (kDa)

4.26

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09890 AT3G09890
fragaria_vesca FvH4_6g16830
malus_domestica MD12G1106800.v1.1
prunus_persica Prupe.7G125700_v2.0.a1
pyrus_communis pycom12g10730
rosa_chinensis RchiOBHm_Chr3g0470841
rosa_laevigata RLG00000024241
rosa_multiflora Rmu_co8290787.1_g000001 Rmu_sc0002790.1_g000024
rosa_roxburghii Rroxscaffold_6G00410490
rosa_rugosa Rorug03G0113100
rosa_samantha Rh3AG162800 Rh3BG187900 Rh3CG177900 Rh3DG187900
rosa_wichuraiana Rw3G015330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AccII CGCG 1 cut(s) 120
AciI CCGC 2 cut(s) 5, 16
AclWI GGATC 1 cut(s) 532
AcsI RAATTY 2 cut(s) 289, 579
AcyI GRCGYC 3 cut(s) 104, 132, 156
AgsI TTSAA 1 cut(s) 365
AjiI CACGTC 1 cut(s) 609
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 4 cut(s) 91, 224, 506, 572
AluI AGCT 4 cut(s) 91, 224, 506, 572
Alw26I GTCTC 2 cut(s) 210, 245
AlwI GGATC 1 cut(s) 532
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 4 cut(s) 189, 455, 590, 599
ApoI RAATTY 2 cut(s) 289, 579
Asp700I GAANNNNTTC 1 cut(s) 360
AspLEI GCGC 2 cut(s) 106, 122
AsuHPI GGTGA 3 cut(s) 446, 476, 501
BanI GGYRCC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 315
BbvI GCAGC 4 cut(s) 201, 467, 577, 586
BccI CCATC 5 cut(s) 25, 131, 206, 237, 456
BciT130I CCWGG 1 cut(s) 12
BciVI GTATCC 1 cut(s) 341
BcoDI GTCTC 2 cut(s) 210, 245
BfaI CTAG 2 cut(s) 413, 573
BfoI RGCGCY 1 cut(s) 107
BfuI GTATCC 1 cut(s) 341
BisI GCNGC 4 cut(s) 190, 456, 591, 600
BlpI GCTNAGC 1 cut(s) 393
BlsI GCNGC 4 cut(s) 191, 457, 592, 601
Bme1390I CCNGG 1 cut(s) 12
BmgBI CACGTC 1 cut(s) 609
BmiI GGNNCC 2 cut(s) 9, 105
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 4 cut(s) 190, 322, 379, 415
BpiI GAAGAC 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 522
Bpu10I CCTNAGC 2 cut(s) 99, 300
Bpu1102I GCTNAGC 1 cut(s) 393
BsaHI GRCGYC 3 cut(s) 104, 132, 156
BsaJI CCNNGG 2 cut(s) 11, 516
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bse1I ACTGG 2 cut(s) 265, 613
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 11, 516
BseGI GGATG 1 cut(s) 310
BseMII CTCAG 3 cut(s) 113, 152, 384
BseNI ACTGG 2 cut(s) 265, 613
BseRI GAGGAG 4 cut(s) 50, 53, 101, 432
BseXI GCAGC 4 cut(s) 201, 467, 577, 586
BseYI CCCAGC 1 cut(s) 341
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 236
BshNI GGYRCC 1 cut(s) 103
BsmAI GTCTC 2 cut(s) 210, 245
BsmI GAATGC 1 cut(s) 414
BsnI GGCC 1 cut(s) 236
Bsp143I GATC 1 cut(s) 537
Bsp1720I GCTNAGC 1 cut(s) 393
BspACI CCGC 2 cut(s) 5, 16
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 3 cut(s) 112, 151, 385
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 9, 105
BspPI GGATC 1 cut(s) 532
BspT107I GGYRCC 1 cut(s) 103
BsrI ACTGG 2 cut(s) 265, 613
BssECI CCNNGG 2 cut(s) 11, 516
BssMI GATC 1 cut(s) 537
BssNI GRCGYC 3 cut(s) 104, 132, 156
BssT1I CCWWGG 1 cut(s) 516
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 380, 421
Bst6I CTCTTC 1 cut(s) 69
BstACI GRCGYC 3 cut(s) 104, 132, 156
BstC8I GCNNGC 2 cut(s) 471, 495
BstDEI CTNAG 5 cut(s) 99, 138, 181, 300, 393
BstF5I GGATG 1 cut(s) 310
BstFNI CGCG 1 cut(s) 120
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 2 cut(s) 106, 122
BstKTI GATC 1 cut(s) 540
BstMAI GTCTC 2 cut(s) 210, 245
BstMBI GATC 1 cut(s) 537
BstMWI GCNNNNNNNGC 3 cut(s) 503, 596, 599
BstNI CCWGG 1 cut(s) 12
BstNSI RCATGY 1 cut(s) 473
BstSCI CCNGG 1 cut(s) 10
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 4 cut(s) 201, 467, 577, 586
BstV2I GAAGAC 1 cut(s) 315
BstX2I RGATCY 1 cut(s) 537
BstYI RGATCY 1 cut(s) 537
BsuI GTATCC 1 cut(s) 341
BsuRI GGCC 1 cut(s) 236
BtgZI GCGATG 1 cut(s) 109
BtrI CACGTC 1 cut(s) 609
BtsCI GGATG 1 cut(s) 310
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 2 cut(s) 210, 385
Cac8I GCNNGC 2 cut(s) 471, 495
CfoI GCGC 2 cut(s) 106, 122
CseI GACGC 3 cut(s) 104, 140, 164
CviAII CATG 2 cut(s) 329, 470
CviJI RGCY 9 cut(s) 91, 224, 236, 299, 497, 506, 560, 572, 590
CviKI_1 RGCY 9 cut(s) 91, 224, 236, 299, 497, 506, 560, 572, 590
DdeI CTNAG 5 cut(s) 99, 138, 181, 300, 393
DinI GGCGCC 1 cut(s) 105
DpnI GATC 1 cut(s) 539
DpnII GATC 1 cut(s) 537
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
EciI GGCGGA 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 516
Eco32I GATATC 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 10
EcoRV GATATC 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 516
EgeI GGCGCC 1 cut(s) 105
EheI GGCGCC 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 516
FaeI CATG 2 cut(s) 332, 473
FaiI YATR 5 cut(s) 246, 330, 471, 482, 529
FatI CATG 2 cut(s) 328, 469
Fnu4HI GCNGC 4 cut(s) 190, 456, 591, 600
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 4 cut(s) 190, 456, 591, 600
FspBI CTAG 2 cut(s) 413, 573
GlaI GCGC 2 cut(s) 105, 121
GluI GCNGC 4 cut(s) 190, 456, 591, 600
GsaI CCCAGC 1 cut(s) 345
GsuI CTGGAG 1 cut(s) 522
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 1 cut(s) 236
HgaI GACGC 3 cut(s) 104, 140, 164
HhaI GCGC 2 cut(s) 106, 122
Hin1I GRCGYC 3 cut(s) 104, 132, 156
Hin1II CATG 2 cut(s) 332, 473
Hin6I GCGC 2 cut(s) 104, 120
HinP1I GCGC 2 cut(s) 104, 120
HphI GGTGA 3 cut(s) 446, 476, 501
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 2 cut(s) 173, 501
Hpy99I CGWCG 2 cut(s) 158, 610
HpyAV CCTTC 3 cut(s) 125, 170, 425
HpyCH4III ACNGT 2 cut(s) 380, 421
HpyCH4IV ACGT 1 cut(s) 608
HpyCH4V TGCA 3 cut(s) 203, 287, 328
HpyF10VI GCNNNNNNNGC 3 cut(s) 503, 596, 599
HpyF3I CTNAG 5 cut(s) 99, 138, 181, 300, 393
HpySE526I ACGT 1 cut(s) 608
Hsp92I GRCGYC 3 cut(s) 104, 132, 156
Hsp92II CATG 2 cut(s) 332, 473
HspAI GCGC 2 cut(s) 104, 120
KasI GGCGCC 1 cut(s) 103
Kzo9I GATC 1 cut(s) 537
LmnI GCTCC 3 cut(s) 88, 314, 503
LpnPI CCDG 9 cut(s) 24, 86, 128, 218, 250, 278, 327, 479, 486
Lsp1109I GCAGC 4 cut(s) 201, 467, 577, 586
LweI GCATC 4 cut(s) 190, 322, 379, 415
MaeI CTAG 2 cut(s) 413, 573
MaeII ACGT 1 cut(s) 608
MaeIII GTNAC 3 cut(s) 267, 383, 545
MalI GATC 1 cut(s) 539
MboI GATC 1 cut(s) 537
MboII GAAGA 4 cut(s) 86, 221, 320, 547
MflI RGATCY 1 cut(s) 537
MluCI AATT 4 cut(s) 289, 318, 372, 579
Mly113I GGCGCC 1 cut(s) 104
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 2 cut(s) 371, 375
MspR9I CCNGG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 414
MvaI CCWGG 1 cut(s) 12
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 3 cut(s) 503, 596, 599
NarI GGCGCC 1 cut(s) 104
NdeII GATC 1 cut(s) 537
NlaIII CATG 2 cut(s) 332, 473
NlaIV GGNNCC 2 cut(s) 9, 105
NmuCI GTSAC 1 cut(s) 545
NspI RCATGY 1 cut(s) 473
PacI TTAATTAA 1 cut(s) 375
PaeI GCATGC 1 cut(s) 473
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PctI GAATGC 1 cut(s) 414
PdmI GAANNNNTTC 1 cut(s) 360
PkrI GCNGC 4 cut(s) 191, 457, 592, 601
PluTI GGCGCC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 10
PspFI CCCAGC 1 cut(s) 341
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 2 cut(s) 9, 105
PsuI RGATCY 1 cut(s) 537
SaqAI TTAA 2 cut(s) 371, 375
SatI GCNGC 4 cut(s) 190, 456, 591, 600
Sau3AI GATC 1 cut(s) 537
ScrFI CCNGG 1 cut(s) 12
SfaNI GCATC 4 cut(s) 190, 322, 379, 415
SfoI GGCGCC 1 cut(s) 105
SphI GCATGC 1 cut(s) 473
Sse9I AATT 4 cut(s) 289, 318, 372, 579
SsiI CCGC 2 cut(s) 5, 16
SspDI GGCGCC 1 cut(s) 103
SspMI CTAG 2 cut(s) 413, 573
StyD4I CCNGG 1 cut(s) 10
StyI CCWWGG 1 cut(s) 516
TaaI ACNGT 2 cut(s) 380, 421
TaiI ACGT 1 cut(s) 611
TaqI TCGA 2 cut(s) 69, 153
TasI AATT 4 cut(s) 289, 318, 372, 579
Tru1I TTAA 2 cut(s) 371, 375
Tru9I TTAA 2 cut(s) 371, 375
TscAI CASTG 2 cut(s) 210, 385
TseFI GTSAC 1 cut(s) 545
TseI GCWGC 4 cut(s) 189, 455, 590, 599
Tsp45I GTSAC 1 cut(s) 545
TspDTI ATGAA 1 cut(s) 321
TspGWI ACGGA 1 cut(s) 327
TspRI CASTG 2 cut(s) 210, 385
XapI RAATTY 2 cut(s) 289, 579
XceI RCATGY 1 cut(s) 473
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 2 cut(s) 413, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.