Rw3G015330

ankyrin repeat family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0014540
Physical Location & Seq
Forward (+)
15781696 .. 15783438
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G015330.1

Sequence Viewer

Length: 612 bp
ATGGCGGTTCCGGGCAGGGGTTTAGTGGAGGCTGACGACAACGATGACGAAAACGCTCTCTTTGAAGAAGAGGGTTTGGAGGACCTCGACTCTCACGCGCCTCCTCACCTACGCGCCATCGCTGACGCCACTCAGCTCGGCGACCTCGACGCCCTCCGACTCGCTCTCGATAACTTAGAAGGCAGTATTGATGAACCAGTGGAAGATGGGGACACAGCTCTGCATCTGGCTTGTCTCTATGGTAAACTTTCTTGTGTCCAGTTGCTTTTGGAGAGGGGGGCAAACTTGGAGGCTAAGGATGAAGATGGAGCTATTCCTCTGCATGATGCTTGTGCTGGGGGATACACTGAGATAGTTCAACTTCTAGTTAACAGTGCTAATGACACCGAGCGTGTAAAGAGAATGCTAGAAGCAGTTGACGCTGAAGGTGATACTCCTCTGCATCATGCAGCCAGAGGTGAGCATGCTGATATTATAAGATTGTTGCTGGCTTCTGGAGCTTCTCCTACAAGGGCAAACCTGTATGGAAAGATCCCAAGTGAGTTACCAGAACCGAACACAGAAGCCAAGGGGATTTTGGAGGCTGCTGCTGATGCTATGGCATGCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5

Protein Analysis

203

Amino Acids

21.52

Weight (kDa)

4.25

Isoelectric Point (pI)

33.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 43 - 126 3.8e-15 Ankyrin repeats (3 copies)
Ank_4 PF13637 46 - 90 1.2e-06 Ankyrin repeats (many copies)
Ank_5 PF13857 68 - 107 7.4e-08 Ankyrin repeats (many copies)
Ank PF00023 69 - 100 1.4e-09 Ankyrin repeat
Ank_3 PF13606 69 - 97 9.7e-06 Ankyrin repeat
Ank_KRIT1 PF24521 71 - 185 1e-06 KRIT1 ankyrin-repeats domain
Ank_4 PF13637 75 - 123 1.8e-08 Ankyrin repeats (many copies)
Ank_2 PF12796 100 - 171 2e-12 Ankyrin repeats (3 copies)
Ank PF00023 143 - 173 1.5e-07 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09890 AT3G09890
fragaria_vesca FvH4_6g16830
malus_domestica MD12G1106800.v1.1
prunus_persica Prupe.7G125700_v2.0.a1
pyrus_communis pycom12g10730
rosa_chinensis RchiOBHm_Chr3g0470841
rosa_laevigata RLG00000024241
rosa_multiflora Rmu_co8290787.1_g000001 Rmu_sc0002790.1_g000024
rosa_roxburghii Rroxscaffold_6G00410490
rosa_rugosa Rorug03G0113100
rosa_samantha Rh3AG162800 Rh3BG187900 Rh3CG177900 Rh3DG187900
rosa_wichuraiana Rw3G015330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 476
AccII CGCG 2 cut(s) 98, 114
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 526
AcuI CTGAAG 1 cut(s) 444
AcyI GRCGYC 2 cut(s) 126, 150
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 2 cut(s) 65, 359
AluBI AGCT 4 cut(s) 136, 218, 311, 500
AluI AGCT 4 cut(s) 136, 218, 311, 500
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 1 cut(s) 526
ApeKI GCWGC 3 cut(s) 449, 584, 587
AspLEI GCGC 2 cut(s) 100, 116
AspS9I GGNCC 1 cut(s) 82
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 3 cut(s) 98, 440, 470
AvaII GGWCC 1 cut(s) 82
BbvI GCAGC 3 cut(s) 461, 571, 574
BccI CCATC 3 cut(s) 125, 200, 299
BciVI GTATCC 1 cut(s) 335
BcnI CCSGG 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 2 cut(s) 365, 407
BfuI GTATCC 1 cut(s) 335
BisI GCNGC 3 cut(s) 450, 585, 588
BlsI GCNGC 3 cut(s) 451, 586, 589
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 4 cut(s) 232, 316, 451, 583
BpmI CTGGAG 1 cut(s) 516
Bpu10I CCTNAGC 1 cut(s) 294
BpuMI CCSGG 1 cut(s) 12
BsaHI GRCGYC 2 cut(s) 126, 150
BsaJI CCNNGG 1 cut(s) 567
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse1I ACTGG 3 cut(s) 197, 259, 607
BseDI CCNNGG 1 cut(s) 567
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMII CTCAG 2 cut(s) 146, 339
BseNI ACTGG 3 cut(s) 197, 259, 607
BseRI GAGGAG 2 cut(s) 93, 426
BseXI GCAGC 3 cut(s) 461, 571, 574
BseYI CCCAGC 1 cut(s) 335
Bsh1236I CGCG 2 cut(s) 98, 114
BsiSI CCGG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 224
BsmI GAATGC 1 cut(s) 408
Bsp143I GATC 1 cut(s) 531
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 145, 340
BspFNI CGCG 2 cut(s) 98, 114
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 1 cut(s) 526
BsrI ACTGG 3 cut(s) 197, 259, 607
BssECI CCNNGG 1 cut(s) 567
BssMI GATC 1 cut(s) 531
BssNI GRCGYC 2 cut(s) 126, 150
BssT1I CCWWGG 1 cut(s) 567
Bst4CI ACNGT 1 cut(s) 374
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 2 cut(s) 126, 150
BstC8I GCNNGC 3 cut(s) 465, 489, 604
BstDEI CTNAG 4 cut(s) 132, 175, 294, 348
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 2 cut(s) 98, 114
BstHHI GCGC 2 cut(s) 100, 116
BstKTI GATC 1 cut(s) 534
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 1 cut(s) 531
BstMWI GCNNNNNNNGC 3 cut(s) 419, 497, 593
BstNSI RCATGY 2 cut(s) 467, 606
BstSCI CCNGG 1 cut(s) 10
BstUI CGCG 2 cut(s) 98, 114
BstV1I GCAGC 3 cut(s) 461, 571, 574
BstX2I RGATCY 1 cut(s) 531
BstYI RGATCY 1 cut(s) 531
BsuI GTATCC 1 cut(s) 335
BtgZI GCGATG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 304
BtsIMutI CAGTG 3 cut(s) 204, 345, 379
Cac8I GCNNGC 3 cut(s) 465, 489, 604
CfoI GCGC 2 cut(s) 100, 116
Cfr13I GGNCC 1 cut(s) 82
CseI GACGC 3 cut(s) 134, 158, 428
CviAII CATG 4 cut(s) 323, 446, 464, 603
DdeI CTNAG 4 cut(s) 132, 175, 294, 348
DpnI GATC 1 cut(s) 533
DpnII GATC 1 cut(s) 531
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 567
Eco47I GGWCC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 444
EcoO109I RGGNCCY 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 567
ErhI CCWWGG 1 cut(s) 567
FaeI CATG 4 cut(s) 326, 449, 467, 606
FaiI YATR 8 cut(s) 240, 324, 447, 465, 476, 525, 599, 604
FaqI GGGAC 1 cut(s) 224
FatI CATG 4 cut(s) 322, 445, 463, 602
Fnu4HI GCNGC 3 cut(s) 450, 585, 588
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 3 cut(s) 450, 585, 588
FspBI CTAG 2 cut(s) 365, 407
GlaI GCGC 2 cut(s) 99, 115
GluI GCNGC 3 cut(s) 450, 585, 588
GsaI CCCAGC 1 cut(s) 339
GsuI CTGGAG 1 cut(s) 516
HapII CCGG 1 cut(s) 11
HgaI GACGC 3 cut(s) 134, 158, 428
HhaI GCGC 2 cut(s) 100, 116
Hin1I GRCGYC 2 cut(s) 126, 150
Hin1II CATG 4 cut(s) 326, 449, 467, 606
Hin6I GCGC 2 cut(s) 98, 114
HinP1I GCGC 2 cut(s) 98, 114
HincII GTYRAC 2 cut(s) 370, 418
HindII GTYRAC 2 cut(s) 370, 418
HinfI GANTC 2 cut(s) 89, 159
HpaI GTTAAC 1 cut(s) 370
HpaII CCGG 1 cut(s) 11
HphI GGTGA 3 cut(s) 98, 440, 470
Hpy166II GTNNAC 3 cut(s) 245, 370, 418
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 2 cut(s) 167, 495
Hpy8I GTNNAC 3 cut(s) 245, 370, 418
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 2 cut(s) 173, 419
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4V TGCA 4 cut(s) 223, 322, 442, 449
HpyF10VI GCNNNNNNNGC 3 cut(s) 419, 497, 593
HpyF3I CTNAG 4 cut(s) 132, 175, 294, 348
Hsp92I GRCGYC 2 cut(s) 126, 150
Hsp92II CATG 4 cut(s) 326, 449, 467, 606
HspAI GCGC 2 cut(s) 98, 114
KspAI GTTAAC 1 cut(s) 370
Kzo9I GATC 1 cut(s) 531
LmnI GCTCC 2 cut(s) 308, 497
Lsp1109I GCAGC 3 cut(s) 461, 571, 574
LweI GCATC 4 cut(s) 232, 316, 451, 583
MaeI CTAG 2 cut(s) 365, 407
MaeIII GTNAC 1 cut(s) 543
MalI GATC 1 cut(s) 533
MboI GATC 1 cut(s) 531
MboII GAAGA 4 cut(s) 77, 80, 215, 314
MflI RGATCY 1 cut(s) 531
MlyI GAGTC 2 cut(s) 83, 153
MmeI TCCRAC 1 cut(s) 181
MseI TTAA 1 cut(s) 369
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 408
MvnI CGCG 2 cut(s) 98, 114
MwoI GCNNNNNNNGC 3 cut(s) 419, 497, 593
NciI CCSGG 1 cut(s) 12
NdeII GATC 1 cut(s) 531
NlaIII CATG 4 cut(s) 326, 449, 467, 606
NlaIV GGNNCC 1 cut(s) 9
NmeAIII GCCGAG 1 cut(s) 117
NspI RCATGY 2 cut(s) 467, 606
PaeI GCATGC 2 cut(s) 467, 606
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PctI GAATGC 1 cut(s) 408
PkrI GCNGC 3 cut(s) 451, 586, 589
PleI GAGTC 2 cut(s) 83, 153
PpsI GAGTC 2 cut(s) 83, 153
PpuMI RGGWCCY 1 cut(s) 82
PsiI TTATAA 1 cut(s) 476
Psp5II RGGWCCY 1 cut(s) 82
PspFI CCCAGC 1 cut(s) 335
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 82
PspPPI RGGWCCY 1 cut(s) 82
PsuI RGATCY 1 cut(s) 531
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 3 cut(s) 450, 585, 588
Sau3AI GATC 1 cut(s) 531
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 2 cut(s) 83, 153
ScrFI CCNGG 1 cut(s) 12
SfaNI GCATC 4 cut(s) 232, 316, 451, 583
SinI GGWCC 1 cut(s) 82
SphI GCATGC 2 cut(s) 467, 606
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 365, 407
StyD4I CCNGG 1 cut(s) 10
StyI CCWWGG 1 cut(s) 567
TaaI ACNGT 1 cut(s) 374
TaqI TCGA 3 cut(s) 87, 147, 168
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 3 cut(s) 204, 352, 379
TseI GCWGC 3 cut(s) 449, 584, 587
TspDTI ATGAA 2 cut(s) 207, 315
TspRI CASTG 3 cut(s) 204, 352, 379
VpaK11BI GGWCC 1 cut(s) 82
XceI RCATGY 2 cut(s) 467, 606
XcmI CCANNNNNNNNNTGG 1 cut(s) 574
XspI CTAG 2 cut(s) 365, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.