AT3G10400

U11 U12 small nuclear ribonucleoprotein 31 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015500
Physical Location & Seq
Forward (+)
3232608 .. 3233690
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10400.1

Sequence Viewer

Length: 786 bp
ATGAAGAAGAGGAAGATTCATCATAGCGACGACGAAGAGGACGACACTTTCTACTATCGCTATTCCTCCGTCGCGGCACCACCACCTTCGAACCCTAAACACCAACCTTCTTCCTCCGCCAAATCATCAGCTCCCGGCGGCGGATCTGGCGGCTTAGCTCCTTCAAAATCAACACTCTACGTCTCCAATCTCGATTTCTCCCTCACCAATTCCGACATCCACACTCTATTCTCCACTTTCGGCAAGGTCGCGAGAGTCACTGTTCTCAAAGATCGCCACACTCGCCAATCTCGTGGCGTCGCGTTCGTGCTCTACGTCTCTCGTGAAGACGCGGCTAAAGCGGCGCGTTCTATGGACGCCAAGATTCTTAATGGTCGGAAACTGACGGTTTCGATCGCCGCTGATAATGGACGTGCGTCGGAGTTTATTAAGAAGAGAGTTTACAAGGATAAATCGAGGTGTTACGAGTGTGGAGACGAAGGGCATCTTTCGTACGAGTGCCCTAAAAATCAGTTAGGTCCAAGGGAGAGACCACCGCCGCCGAAGAAAAGGGGGCGGCGGAAGGAGGAGGAAGGTGAGGCTGAGGAAATTAGTTGGTCTGCGGCGGCGCCTTCGTTGGCTGTGGCGGAGGAGGAATTTGAGGAGGAGAATTGGGCTTCGGTGGTGGATAATGAAGCTGGAGAGAGGTTGAGAAAAAGAGAAGCAGAGGAAGAAGAAGAGAGGAGGATGAAGAGAAAGGAGAAGAAAGTTAGCTACTTTAGTGATGAGAGTGATGATGAAGATTAG

Protein Analysis

261

Amino Acids

29.37

Weight (kDa)

6.64

Isoelectric Point (pI)

59.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 59 - 128 5.1e-19 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10400
fragaria_vesca FvH4_7g18730 FvH4_7g18730
malus_domestica MD01G1102800.v1.1
prunus_persica Prupe.2G208400_v2.0.a1
pyrus_communis pycom01g12930 pycom07g16330
rosa_chinensis RchiOBHm_Chr1g0362501
rosa_laevigata RLG00000027641
rosa_roxburghii Rroxscaffold_4G00294090
rosa_rugosa Rorug01G0298500
rosa_samantha Rh1AG307900 Rh1BG271000 Rh1CG288700 Rh1DG301200
rosa_wichuraiana Rw1G027320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 76, 607
AccII CGCG 5 cut(s) 74, 251, 302, 332, 346
AclWI GGATC 1 cut(s) 151
AcsI RAATTY 1 cut(s) 635
AcyI GRCGYC 3 cut(s) 297, 357, 608
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 1 cut(s) 140
AgsI TTSAA 1 cut(s) 165
AjiI CACGTC 1 cut(s) 413
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AluBI AGCT 4 cut(s) 131, 158, 677, 753
AluI AGCT 4 cut(s) 131, 158, 677, 753
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 4 cut(s) 187, 322, 468, 523
AlwI GGATC 1 cut(s) 151
ApoI RAATTY 1 cut(s) 635
AspLEI GCGC 2 cut(s) 346, 610
AspS9I GGNCC 1 cut(s) 518
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 2 cut(s) 196, 587
AsuII TTCGAA 1 cut(s) 89
AvaII GGWCC 1 cut(s) 518
BaeGI GKGCMC 1 cut(s) 503
BanI GGYRCC 2 cut(s) 76, 607
BarI GAAGNNNNNNTAC 2 cut(s) 425, 457
BauI CACGAG 2 cut(s) 291, 321
BbsI GAAGAC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 312
BbvCI CCTCAGC 1 cut(s) 582
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 4 cut(s) 187, 322, 468, 523
BfoI RGCGCY 1 cut(s) 611
BlpI GCTNAGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 518
BmgBI CACGTC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 518
BmiI GGNNCC 2 cut(s) 78, 609
BmrFI CCNGG 1 cut(s) 135
BmsI GCATC 1 cut(s) 493
BoxI GACNNNNGTC 1 cut(s) 415
BpiI GAAGAC 1 cut(s) 333
BpmI CTGGAG 1 cut(s) 699
Bpu10I CCTNAGC 1 cut(s) 582
Bpu1102I GCTNAGC 1 cut(s) 154
Bpu14I TTCGAA 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 135
BsaHI GRCGYC 3 cut(s) 297, 357, 608
BsaI GGTCTC 1 cut(s) 523
BsaJI CCNNGG 1 cut(s) 521
Bsc4I CCNNNNNNNGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 521
BseGI GGATG 2 cut(s) 216, 732
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMII CTCAG 1 cut(s) 573
BseRI GAGGAG 5 cut(s) 581, 644, 656, 659, 736
BseSI GKGCMC 1 cut(s) 503
Bsh1236I CGCG 5 cut(s) 74, 251, 302, 332, 346
Bsh1285I CGRYCG 1 cut(s) 396
BshNI GGYRCC 2 cut(s) 76, 607
BsiEI CGRYCG 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 1 cut(s) 135
BsiWI CGTACG 1 cut(s) 492
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 4 cut(s) 187, 322, 468, 523
BsmBI CGTCTC 3 cut(s) 187, 322, 468
Bso31I GGTCTC 1 cut(s) 523
Bsp119I TTCGAA 1 cut(s) 89
Bsp1286I GDGCHC 2 cut(s) 312, 503
Bsp143I GATC 3 cut(s) 143, 271, 393
Bsp1720I GCTNAGC 1 cut(s) 154
Bsp68I TCGCGA 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 574
BspFNI CGCG 5 cut(s) 74, 251, 302, 332, 346
BspLI GGNNCC 2 cut(s) 78, 609
BspPI GGATC 1 cut(s) 151
BspT104I TTCGAA 1 cut(s) 89
BspT107I GGYRCC 2 cut(s) 76, 607
BspTNI GGTCTC 1 cut(s) 523
BssECI CCNNGG 1 cut(s) 521
BssMI GATC 3 cut(s) 143, 271, 393
BssNI GRCGYC 3 cut(s) 297, 357, 608
BssSI CACGAG 2 cut(s) 291, 321
BssT1I CCWWGG 1 cut(s) 521
Bst2BI CACGAG 2 cut(s) 291, 321
Bst4CI ACNGT 2 cut(s) 262, 388
Bst6I CTCTTC 5 cut(s) 2, 30, 428, 711, 725
BstACI GRCGYC 3 cut(s) 297, 357, 608
BstBI TTCGAA 1 cut(s) 89
BstDEI CTNAG 2 cut(s) 154, 582
BstF5I GGATG 2 cut(s) 216, 732
BstFNI CGCG 5 cut(s) 74, 251, 302, 332, 346
BstH2I RGCGCY 1 cut(s) 611
BstHHI GCGC 2 cut(s) 346, 610
BstKTI GATC 3 cut(s) 146, 274, 396
BstMAI GTCTC 4 cut(s) 187, 322, 468, 523
BstMBI GATC 3 cut(s) 143, 271, 393
BstMCI CGRYCG 1 cut(s) 396
BstMWI GCNNNNNNNGC 4 cut(s) 147, 282, 338, 341
BstPAI GACNNNNGTC 1 cut(s) 415
BstSCI CCNGG 1 cut(s) 133
BstSLI GKGCMC 1 cut(s) 503
BstUI CGCG 5 cut(s) 74, 251, 302, 332, 346
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 143
BstXI CCANNNNNNTGG 1 cut(s) 293
BstYI RGATCY 1 cut(s) 143
BtrI CACGTC 1 cut(s) 413
BtsCI GGATG 2 cut(s) 216, 732
BtsIMutI CAGTG 1 cut(s) 258
BtuMI TCGCGA 1 cut(s) 251
CfoI GCGC 2 cut(s) 346, 610
Cfr13I GGNCC 1 cut(s) 518
CseI GACGC 4 cut(s) 286, 338, 365, 405
Csp6I GTAC 1 cut(s) 493
CviJI RGCY 9 cut(s) 131, 153, 158, 335, 581, 620, 656, 677, 753
CviKI_1 RGCY 9 cut(s) 131, 153, 158, 335, 581, 620, 656, 677, 753
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 2 cut(s) 154, 582
DinI GGCGCC 1 cut(s) 609
DpnI GATC 3 cut(s) 145, 273, 395
DpnII GATC 3 cut(s) 143, 271, 393
Eam1104I CTCTTC 5 cut(s) 2, 30, 428, 711, 725
EarI CTCTTC 5 cut(s) 2, 30, 428, 711, 725
EciI GGCGGA 4 cut(s) 106, 156, 574, 641
Eco130I CCWWGG 1 cut(s) 521
Eco31I GGTCTC 1 cut(s) 523
Eco47I GGWCC 1 cut(s) 518
EcoT14I CCWWGG 1 cut(s) 521
EgeI GGCGCC 1 cut(s) 609
EheI GGCGCC 1 cut(s) 609
ErhI CCWWGG 1 cut(s) 521
Esp3I CGTCTC 3 cut(s) 187, 322, 468
FaiI YATR 2 cut(s) 24, 353
FalI AAGNNNNNCTT 2 cut(s) 471, 503
FokI GGATG 2 cut(s) 203, 739
GlaI GCGC 2 cut(s) 345, 609
GsuI CTGGAG 1 cut(s) 699
HaeII RGCGCY 1 cut(s) 611
HapII CCGG 1 cut(s) 135
HgaI GACGC 4 cut(s) 286, 338, 365, 405
HhaI GCGC 2 cut(s) 346, 610
Hin1I GRCGYC 3 cut(s) 297, 357, 608
Hin6I GCGC 2 cut(s) 344, 608
HinP1I GCGC 2 cut(s) 344, 608
HinfI GANTC 3 cut(s) 16, 255, 364
HpaII CCGG 1 cut(s) 135
HphI GGTGA 2 cut(s) 196, 587
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 3 cut(s) 214, 378, 421
Hpy188III TCNNGA 3 cut(s) 191, 250, 323
Hpy8I GTNNAC 1 cut(s) 442
Hpy99I CGWCG 5 cut(s) 32, 35, 74, 302, 421
HpyAV CCTTC 7 cut(s) 96, 117, 171, 473, 556, 566, 621
HpyCH4III ACNGT 2 cut(s) 262, 388
HpyCH4IV ACGT 3 cut(s) 180, 315, 412
HpyF10VI GCNNNNNNNGC 4 cut(s) 147, 282, 338, 341
HpyF3I CTNAG 2 cut(s) 154, 582
HpySE526I ACGT 3 cut(s) 180, 315, 412
Hsp92I GRCGYC 3 cut(s) 297, 357, 608
HspAI GCGC 2 cut(s) 344, 608
KasI GGCGCC 1 cut(s) 607
Kzo9I GATC 3 cut(s) 143, 271, 393
LmnI GCTCC 2 cut(s) 136, 163
LpnPI CCDG 3 cut(s) 132, 148, 663
LweI GCATC 1 cut(s) 493
MaeII ACGT 3 cut(s) 180, 315, 412
MaeIII GTNAC 2 cut(s) 256, 461
MalI GATC 3 cut(s) 145, 273, 395
MboI GATC 3 cut(s) 143, 271, 393
MflI RGATCY 1 cut(s) 143
MhlI GDGCHC 2 cut(s) 312, 503
MluCI AATT 4 cut(s) 208, 588, 635, 649
Mly113I GGCGCC 1 cut(s) 608
MlyI GAGTC 1 cut(s) 264
MmeI TCCRAC 3 cut(s) 237, 356, 399
MseI TTAA 2 cut(s) 369, 429
MspA1I CMGCKG 1 cut(s) 401
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 135
MvnI CGCG 5 cut(s) 74, 251, 302, 332, 346
MwoI GCNNNNNNNGC 4 cut(s) 147, 282, 338, 341
NarI GGCGCC 1 cut(s) 608
NciI CCSGG 1 cut(s) 135
NdeII GATC 3 cut(s) 143, 271, 393
NlaIV GGNNCC 2 cut(s) 78, 609
NmuCI GTSAC 1 cut(s) 256
NruI TCGCGA 1 cut(s) 251
NspV TTCGAA 1 cut(s) 89
PcsI WCGNNNNNNNCGW 3 cut(s) 39, 289, 312
PfeI GAWTC 2 cut(s) 16, 364
Pfl23II CGTACG 1 cut(s) 492
Ple19I CGATCG 1 cut(s) 396
PleI GAGTC 1 cut(s) 263
PluTI GGCGCC 1 cut(s) 611
PpsI GAGTC 1 cut(s) 263
PshAI GACNNNNGTC 1 cut(s) 415
PspLI CGTACG 1 cut(s) 492
PspN4I GGNNCC 2 cut(s) 78, 609
PspPI GGNCC 1 cut(s) 518
PsuI RGATCY 1 cut(s) 143
PvuI CGATCG 1 cut(s) 396
RruI TCGCGA 1 cut(s) 251
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
SaqAI TTAA 2 cut(s) 369, 429
Sau3AI GATC 3 cut(s) 143, 271, 393
Sau96I GGNCC 1 cut(s) 518
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 2 cut(s) 312, 503
SfaNI GCATC 1 cut(s) 493
SfoI GGCGCC 1 cut(s) 609
SfuI TTCGAA 1 cut(s) 89
SinI GGWCC 1 cut(s) 518
Sse9I AATT 4 cut(s) 208, 588, 635, 649
SspDI GGCGCC 1 cut(s) 607
StyD4I CCNGG 1 cut(s) 133
StyI CCWWGG 1 cut(s) 521
TaaI ACNGT 2 cut(s) 262, 388
TaiI ACGT 3 cut(s) 183, 318, 415
TaqI TCGA 4 cut(s) 89, 192, 392, 455
TasI AATT 4 cut(s) 208, 588, 635, 649
TfiI GAWTC 2 cut(s) 16, 364
Tru1I TTAA 2 cut(s) 369, 429
Tru9I TTAA 2 cut(s) 369, 429
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 4 cut(s) 8, 17, 687, 743
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 518
XapI RAATTY 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.