Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0015500

Physical Location & Seq

Genomic Coordinates Reverse (-)

15557980 .. 15561336

Gene Structure 3357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g18730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCGCCAAAGAAGAAGAGGAGCGCCACCAACAGCGACGACGACGATGAATTGGACTCCCTCTGCAACCGCTACCCCTCCGCCCCGCAGGCCCAAAAGCCCACAAAATCCACCGGGTCGGGTTCGGGTTCGGGTCCCGGATCCACCCTAGCGCCGTCGAAATCGACCCTCTACGTGGCCAACCTGGACTACTCCCTAACCAACTCCGACCTCCACAGCCTCTTCTCCCGCTTCGGCAAGATCGCCCGCGTCACCGTCCTCAAGGACCGCGACACGCGCCGCAGCAAAGGCGTCGCCTTCGTCCAGTTCGTCACGCGCGACGACGCCGTCGCCTCCGCGCGTGAGATGCACGGCAAGATCCTCAACGGCCGGAAGCTCTCGGCGTCGATCGCCGCGGACAACGGACGCGCCGCCGAGTTCATAAAGAAGCGGGAGTACAAGGACAAGAGCCGCTGCTACGAGTGCGGCGACGAGGGGCATTTGAGTTATGAGTGCCCCAAGAACCAGCTCGGGCCGAGGGAGCGGCCGCCGCAGAAGAAACCGAGGCGCGGCGGAGGTGGTAGAGGTGGTGGGGAGGCGCGTGGGGAGGACGAGGTGGAGTGGGAGAGTGGGGGAGAGAGGTTTGAGGAGGATAATTGGGCTTCTGTGGTGGATGGTGGGGCCGGGGAGAGGTTGTTGAGTGAGGAGATGGAGGAGGAGAAGAAGAGGAAGAAGAAGGTTAAGAAAGGAGGCTACTTTAGTGATGAGAGTGATCATGATGATGAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051302 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

257

Amino Acids

28.17

Weight (kDa)

7.63

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	57 - 126	9.7e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10400
fragaria_vesca	FvH4_7g18730 FvH4_7g18730
malus_domestica	MD01G1102800.v1.1
prunus_persica	Prupe.2G208400_v2.0.a1
pyrus_communis	pycom01g12930 pycom07g16330
rosa_chinensis	RchiOBHm_Chr1g0362501
rosa_laevigata	RLG00000027641
rosa_roxburghii	Rroxscaffold_4G00294090
rosa_rugosa	Rorug01G0298500
rosa_samantha	Rh1AG307900 Rh1BG271000 Rh1CG288700 Rh1DG301200
rosa_wichuraiana	Rw1G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AccB1I	GGYRCC	1 cut(s)	4
AccBSI	CCGCTC	1 cut(s)	523
AclWI	GGATC	3 cut(s)	135, 148, 352
AcoI	YGGCCR	3 cut(s)	177, 367, 524
AcyI	GRCGYC	4 cut(s)	5, 291, 324, 383
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	3 cut(s)	175, 548, 669
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	2 cut(s)	376, 508
AluI	AGCT	2 cut(s)	376, 508
AlwI	GGATC	3 cut(s)	135, 148, 352
Ama87I	CYCGRG	1 cut(s)	509
AoxI	GGCC	6 cut(s)	90, 177, 367, 512, 524, 660
ApeKI	GCWGC	2 cut(s)	282, 453
AspLEI	GCGC	9 cut(s)	7, 26, 154, 279, 318, 340, 410, 549, 580
AspS9I	GGNCC	5 cut(s)	91, 134, 265, 512, 660
AsuC2I	CCSGG	3 cut(s)	115, 138, 664
AsuHPI	GGTGA	1 cut(s)	244
AvaI	CYCGRG	1 cut(s)	509
AvaII	GGWCC	2 cut(s)	134, 265
BaeGI	GKGCMC	1 cut(s)	497
BalI	TGGCCA	1 cut(s)	179
BamHI	GGATCC	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	4
BarI	GAAGNNNNNNTAC	2 cut(s)	419, 451
BbvI	GCAGC	2 cut(s)	294, 440
BccI	CCATC	2 cut(s)	647, 682
BceAI	ACGGC	4 cut(s)	139, 311, 367, 382
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BciT130I	CCWGG	1 cut(s)	185
BclI	TGATCA	1 cut(s)	751
BcnI	CCSGG	3 cut(s)	115, 138, 664
BfaI	CTAG	1 cut(s)	149
BfoI	RGCGCY	3 cut(s)	8, 27, 155
BglI	GCCNNNNNGGC	1 cut(s)	89
Bme1390I	CCNGG	4 cut(s)	115, 138, 185, 664
Bme18I	GGWCC	2 cut(s)	134, 265
BmeT110I	CYCGRG	1 cut(s)	509
BmgT120I	GGNCC	5 cut(s)	91, 134, 265, 512, 660
BmiI	GGNNCC	5 cut(s)	6, 135, 136, 142, 661
BmrFI	CCNGG	4 cut(s)	115, 138, 185, 664
BmsI	GCATC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	3 cut(s)	115, 138, 664
BsaAI	YACGTR	1 cut(s)	175
BsaHI	GRCGYC	4 cut(s)	5, 291, 324, 383
BsaJI	CCNNGG	4 cut(s)	393, 515, 542, 663
BsaXI	ACNNNNNCTCC	2 cut(s)	659, 689
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 548, 669
Bse1I	ACTGG	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	4 cut(s)	393, 515, 542, 663
BseGI	GGATG	1 cut(s)	658
BseLI	CCNNNNNNNGG	3 cut(s)	175, 548, 669
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	5 cut(s)	34, 641, 698, 707, 710
BseSI	GKGCMC	1 cut(s)	497
BseX3I	CGGCCG	2 cut(s)	367, 524
BseXI	GCAGC	2 cut(s)	294, 440
Bsh1285I	CGRYCG	3 cut(s)	370, 390, 527
BshFI	GGCC	6 cut(s)	92, 179, 369, 514, 526, 662
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	3 cut(s)	370, 390, 527
BsiHKCI	CYCGRG	1 cut(s)	509
BsiSI	CCGG	4 cut(s)	114, 138, 370, 663
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	3 cut(s)	175, 548, 669
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	6 cut(s)	92, 179, 369, 514, 526, 662
BsoBI	CYCGRG	1 cut(s)	509
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp143I	GATC	5 cut(s)	140, 240, 357, 387, 751
BspANI	GGCC	6 cut(s)	92, 179, 369, 514, 526, 662
BspHI	TCATGA	1 cut(s)	754
BspLI	GGNNCC	5 cut(s)	6, 135, 136, 142, 661
BspPI	GGATC	3 cut(s)	135, 148, 352
BspT107I	GGYRCC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	523
BsrI	ACTGG	1 cut(s)	304
BssECI	CCNNGG	4 cut(s)	393, 515, 542, 663
BssMI	GATC	5 cut(s)	140, 240, 357, 387, 751
BssNI	GRCGYC	4 cut(s)	5, 291, 324, 383
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	3 cut(s)	11, 227, 698
BstACI	GRCGYC	4 cut(s)	5, 291, 324, 383
BstBAI	YACGTR	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	90, 247
BstDSI	CCRYGG	1 cut(s)	393
BstF5I	GGATG	1 cut(s)	658
BstH2I	RGCGCY	3 cut(s)	8, 27, 155
BstHHI	GCGC	9 cut(s)	7, 26, 154, 279, 318, 340, 410, 549, 580
BstKTI	GATC	5 cut(s)	143, 243, 360, 390, 754
BstMBI	GATC	5 cut(s)	140, 240, 357, 387, 751
BstMCI	CGRYCG	3 cut(s)	370, 390, 527
BstMWI	GCNNNNNNNGC	8 cut(s)	89, 276, 288, 346, 389, 462, 520, 529
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	4 cut(s)	113, 136, 183, 662
BstSLI	GKGCMC	1 cut(s)	497
BstV1I	GCAGC	2 cut(s)	294, 440
BstX2I	RGATCY	2 cut(s)	140, 357
BstYI	RGATCY	2 cut(s)	140, 357
BstZI	CGGCCG	2 cut(s)	367, 524
BsuRI	GGCC	6 cut(s)	92, 179, 369, 514, 526, 662
BtgI	CCRYGG	1 cut(s)	393
BtsCI	GGATG	1 cut(s)	658
Cac8I	GCNNGC	2 cut(s)	90, 247
CciI	TCATGA	1 cut(s)	754
CciNI	GCGGCCGC	1 cut(s)	524
CfoI	GCGC	9 cut(s)	7, 26, 154, 279, 318, 340, 410, 549, 580
Cfr13I	GGNCC	5 cut(s)	91, 134, 265, 512, 660
Cfr42I	CCGCGG	1 cut(s)	396
CseI	GACGC	5 cut(s)	238, 280, 332, 372, 414
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	1 cut(s)	755
CviQI	GTAC	1 cut(s)	436
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	5 cut(s)	142, 242, 359, 389, 753
DpnII	GATC	5 cut(s)	140, 240, 357, 387, 751
DrdI	GACNNNNNNGTC	1 cut(s)	326
DseDI	GACNNNNNNGTC	1 cut(s)	326
EaeI	YGGCCR	3 cut(s)	177, 367, 524
EagI	CGGCCG	2 cut(s)	367, 524
Eam1104I	CTCTTC	3 cut(s)	11, 227, 698
EarI	CTCTTC	3 cut(s)	11, 227, 698
EciI	GGCGGA	2 cut(s)	70, 567
EclXI	CGGCCG	2 cut(s)	367, 524
Eco47I	GGWCC	2 cut(s)	134, 265
Eco52I	CGGCCG	2 cut(s)	367, 524
Eco88I	CYCGRG	1 cut(s)	509
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	183
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	1 cut(s)	758
FaiI	YATR	3 cut(s)	422, 489, 756
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	1 cut(s)	754
FauI	CCCGC	4 cut(s)	93, 236, 254, 423
FbaI	TGATCA	1 cut(s)	751
FokI	GGATG	1 cut(s)	665
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	9 cut(s)	6, 25, 153, 278, 317, 339, 409, 548, 579
HaeII	RGCGCY	3 cut(s)	8, 27, 155
HaeIII	GGCC	6 cut(s)	92, 179, 369, 514, 526, 662
HapII	CCGG	4 cut(s)	114, 138, 370, 663
HgaI	GACGC	5 cut(s)	238, 280, 332, 372, 414
HhaI	GCGC	9 cut(s)	7, 26, 154, 279, 318, 340, 410, 549, 580
Hin1I	GRCGYC	4 cut(s)	5, 291, 324, 383
Hin1II	CATG	1 cut(s)	758
Hin6I	GCGC	9 cut(s)	5, 24, 152, 277, 316, 338, 408, 547, 578
HinP1I	GCGC	9 cut(s)	5, 24, 152, 277, 316, 338, 408, 547, 578
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	4 cut(s)	114, 138, 370, 663
HphI	GGTGA	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	1 cut(s)	755
HpyAV	CCTTC	2 cut(s)	307, 709
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	2 cut(s)	66, 349
HpyF10VI	GCNNNNNNNGC	8 cut(s)	89, 276, 288, 346, 389, 462, 520, 529
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	4 cut(s)	5, 291, 324, 383
Hsp92II	CATG	1 cut(s)	758
HspAI	GCGC	9 cut(s)	5, 24, 152, 277, 316, 338, 408, 547, 578
KasI	GGCGCC	1 cut(s)	4
KflI	GGGWCCC	1 cut(s)	134
Ksp22I	TGATCA	1 cut(s)	751
KspI	CCGCGG	1 cut(s)	396
Kzo9I	GATC	5 cut(s)	140, 240, 357, 387, 751
LmnI	GCTCC	2 cut(s)	21, 520
LpnPI	CCDG	9 cut(s)	74, 127, 151, 170, 197, 317, 383, 518, 676
Lsp1109I	GCAGC	2 cut(s)	294, 440
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	250, 310
MalI	GATC	5 cut(s)	142, 242, 359, 389, 753
MbiI	CCGCTC	1 cut(s)	523
MboI	GATC	5 cut(s)	140, 240, 357, 387, 751
MboII	GAAGA	8 cut(s)	25, 28, 214, 547, 712, 715, 721, 724
MflI	RGATCY	2 cut(s)	140, 357
MhlI	GDGCHC	1 cut(s)	497
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	2 cut(s)	50, 634
MluNI	TGGCCA	1 cut(s)	179
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	231
Mox20I	TGGCCA	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	1 cut(s)	720
MslI	CAYNNNNRTG	1 cut(s)	759
Msp20I	TGGCCA	1 cut(s)	179
MspA1I	CMGCKG	2 cut(s)	395, 453
MspI	CCGG	4 cut(s)	114, 138, 370, 663
MspR9I	CCNGG	4 cut(s)	115, 138, 185, 664
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	8 cut(s)	89, 276, 288, 346, 389, 462, 520, 529
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	3 cut(s)	115, 138, 664
NdeII	GATC	5 cut(s)	140, 240, 357, 387, 751
NlaIII	CATG	1 cut(s)	758
NlaIV	GGNNCC	5 cut(s)	6, 135, 136, 142, 661
NmeAIII	GCCGAG	3 cut(s)	359, 439, 540
NmuCI	GTSAC	2 cut(s)	250, 310
NotI	GCGGCCGC	1 cut(s)	524
PagI	TCATGA	1 cut(s)	754
PcsI	WCGNNNNNNNCGW	3 cut(s)	306, 315, 465
PflFI	GACNNNGTC	1 cut(s)	326
PfoI	TCCNGGA	1 cut(s)	136
Ple19I	CGATCG	1 cut(s)	390
PleI	GAGTC	1 cut(s)	50
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	50
Ppu21I	YACGTR	1 cut(s)	175
PpuMI	RGGWCCY	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	5 cut(s)	6, 135, 136, 142, 661
PspPI	GGNCC	5 cut(s)	91, 134, 265, 512, 660
PspPPI	RGGWCCY	1 cut(s)	134
PsuI	RGATCY	2 cut(s)	140, 357
PsyI	GACNNNGTC	1 cut(s)	326
PvuI	CGATCG	1 cut(s)	390
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
RseI	CAYNNNNRTG	1 cut(s)	759
SacII	CCGCGG	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	720
Sau3AI	GATC	5 cut(s)	140, 240, 357, 387, 751
Sau96I	GGNCC	5 cut(s)	91, 134, 265, 512, 660
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	4 cut(s)	115, 138, 185, 664
SduI	GDGCHC	1 cut(s)	497
SfaNI	GCATC	1 cut(s)	336
SfoI	GGCGCC	1 cut(s)	6
Sfr303I	CCGCGG	1 cut(s)	396
SgrBI	CCGCGG	1 cut(s)	396
SinI	GGWCC	2 cut(s)	134, 265
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	2 cut(s)	50, 634
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	4 cut(s)	113, 136, 183, 662
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	3 cut(s)	158, 164, 386
TasI	AATT	2 cut(s)	50, 634
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	9 cut(s)	282, 395, 413, 453, 468, 526, 529, 532, 552
Tru1I	TTAA	1 cut(s)	720
Tru9I	TTAA	1 cut(s)	720
TseFI	GTSAC	2 cut(s)	250, 310
TseI	GCWGC	2 cut(s)	282, 453
Tsp45I	GTSAC	2 cut(s)	250, 310
TspDTI	ATGAA	2 cut(s)	63, 409
TspGWI	ACGGA	1 cut(s)	417
Tth111I	GACNNNGTC	1 cut(s)	326
VpaK11BI	GGWCC	2 cut(s)	134, 265
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.