pycom07g16330

Zinc finger CCHC-type and RNA-binding motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0015500
Physical Location & Seq
Reverse (-)
18746149 .. 18746448
300 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g16330.1

Sequence Viewer

Length: 300 bp
ATGGCGGAAAAGAGGAAGAAGAAGAAGAACAGCGACGAAGACGAAGACGACACCTTCTGCTATCGTTATGCCTCCTCTGCCCCACAAACCCCAAAACCCACTAACCGAAAAACGGTAAGTGCGTCTGGCTCAGGAACCTTAGCGCCATCGAAACCGACCCTCTATGTCTCCAACCTCGACTACTCCCTCACCAATTCGGATCTCCACACCCTCTTCTCCCACTTCGGTAAGATCGCCGAGTCACCGTCCTCAAGAATCGCGAGACCCGCCAGAGCTGCGGCGTCGCCTTCGTCCAATTAG

Protein Analysis

100

Amino Acids

10.74

Weight (kDa)

9.52

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 54 - 80 7.2e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10400
fragaria_vesca FvH4_7g18730 FvH4_7g18730
malus_domestica MD01G1102800.v1.1
prunus_persica Prupe.2G208400_v2.0.a1
pyrus_communis pycom01g12930 pycom07g16330
rosa_chinensis RchiOBHm_Chr1g0362501
rosa_laevigata RLG00000027641
rosa_roxburghii Rroxscaffold_4G00294090
rosa_rugosa Rorug01G0298500
rosa_samantha Rh1AG307900 Rh1BG271000 Rh1CG288700 Rh1DG301200
rosa_wichuraiana Rw1G027320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 260
AciI CCGC 3 cut(s) 5, 267, 278
AclWI GGATC 1 cut(s) 207
AcyI GRCGYC 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 112
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
Alw26I GTCTC 2 cut(s) 172, 256
AlwI GGATC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 145
AsuHPI GGTGA 2 cut(s) 181, 234
BbsI GAAGAC 2 cut(s) 45, 51
BbvI GCAGC 1 cut(s) 262
BccI CCATC 1 cut(s) 154
BcoDI GTCTC 2 cut(s) 172, 256
BfoI RGCGCY 1 cut(s) 146
BisI GCNGC 2 cut(s) 276, 279
BlsI GCNGC 2 cut(s) 277, 280
BmiI GGNNCC 1 cut(s) 136
BpiI GAAGAC 2 cut(s) 45, 51
Bpu10I CCTNAGC 2 cut(s) 130, 139
BpuEI CTTGAG 1 cut(s) 235
BsaHI GRCGYC 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 262
Bsh1236I CGCG 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 112
BsmAI GTCTC 2 cut(s) 172, 256
Bso31I GGTCTC 1 cut(s) 256
Bsp143I GATC 2 cut(s) 199, 231
Bsp68I TCGCGA 1 cut(s) 260
BspACI CCGC 3 cut(s) 5, 267, 278
BspCNI CTCAG 1 cut(s) 143
BspFNI CGCG 1 cut(s) 260
BspLI GGNNCC 1 cut(s) 136
BspPI GGATC 1 cut(s) 207
BspTNI GGTCTC 1 cut(s) 256
BssMI GATC 2 cut(s) 199, 231
BssNI GRCGYC 1 cut(s) 281
Bst4CI ACNGT 2 cut(s) 115, 246
Bst6I CTCTTC 1 cut(s) 218
BstACI GRCGYC 1 cut(s) 281
BstDEI CTNAG 2 cut(s) 130, 139
BstFNI CGCG 1 cut(s) 260
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 2 cut(s) 202, 234
BstMAI GTCTC 2 cut(s) 172, 256
BstMBI GATC 2 cut(s) 199, 231
BstMWI GCNNNNNNNGC 3 cut(s) 77, 266, 275
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 262
BstV2I GAAGAC 2 cut(s) 45, 51
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BtuMI TCGCGA 1 cut(s) 260
CfoI GCGC 1 cut(s) 145
CseI GACGC 2 cut(s) 111, 270
CviJI RGCY 2 cut(s) 129, 275
CviKI_1 RGCY 2 cut(s) 129, 275
DdeI CTNAG 2 cut(s) 130, 139
DpnI GATC 2 cut(s) 201, 233
DpnII GATC 2 cut(s) 199, 231
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 256
FaiI YATR 2 cut(s) 69, 165
FauI CCCGC 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 276, 279
Fsp4HI GCNGC 2 cut(s) 276, 279
GlaI GCGC 1 cut(s) 144
GluI GCNGC 2 cut(s) 276, 279
HaeII RGCGCY 1 cut(s) 146
HgaI GACGC 2 cut(s) 111, 270
HhaI GCGC 1 cut(s) 145
Hin1I GRCGYC 1 cut(s) 281
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HinfI GANTC 2 cut(s) 239, 255
HphI GGTGA 2 cut(s) 181, 234
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 3 cut(s) 132, 252, 259
Hpy99I CGWCG 2 cut(s) 38, 286
HpyAV CCTTC 2 cut(s) 64, 297
HpyCH4III ACNGT 2 cut(s) 115, 246
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 266, 275
HpyF3I CTNAG 2 cut(s) 130, 139
Hsp92I GRCGYC 1 cut(s) 281
HspAI GCGC 1 cut(s) 143
Kzo9I GATC 2 cut(s) 199, 231
LpnPI CCDG 3 cut(s) 111, 117, 283
Lsp1109I GCAGC 1 cut(s) 262
MaeIII GTNAC 1 cut(s) 240
MalI GATC 2 cut(s) 201, 233
MboI GATC 2 cut(s) 199, 231
MboII GAAGA 7 cut(s) 28, 31, 34, 37, 50, 56, 205
MflI RGATCY 1 cut(s) 199
MluCI AATT 2 cut(s) 193, 295
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 8 cut(s) 6, 82, 85, 170, 185, 197, 221, 259
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 3 cut(s) 77, 266, 275
NdeII GATC 2 cut(s) 199, 231
NlaIV GGNNCC 1 cut(s) 136
NmeAIII GCCGAG 1 cut(s) 262
NmuCI GTSAC 1 cut(s) 240
NruI TCGCGA 1 cut(s) 260
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PfeI GAWTC 1 cut(s) 255
PkrI GCNGC 2 cut(s) 277, 280
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 136
PsuI RGATCY 1 cut(s) 199
RruI TCGCGA 1 cut(s) 260
SatI GCNGC 2 cut(s) 276, 279
Sau3AI GATC 2 cut(s) 199, 231
SchI GAGTC 1 cut(s) 248
SetI ASST 4 cut(s) 56, 140, 177, 277
SgeI CNNG 9 cut(s) 138, 144, 188, 250, 264, 271, 273, 278, 282
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
Sse9I AATT 2 cut(s) 193, 295
SsiI CCGC 3 cut(s) 5, 267, 278
TaaI ACNGT 2 cut(s) 115, 246
TaqI TCGA 2 cut(s) 149, 177
TasI AATT 2 cut(s) 193, 295
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 1 cut(s) 255
TseFI GTSAC 1 cut(s) 240
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.