RchiOBHm_Chr1g0362501

Zinc finger CCHC-type and RNA-binding motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0015500
Physical Location & Seq
Reverse (-)
54142965 .. 54144107
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58731

Sequence Viewer

Length: 792 bp
ATGGCGCCAAAGAAGAAGAGGAGCAACGACGACGACGACGAAGACGAATTGGAATCCCTCTGCAACCGCTACCCCTCCGCCCCGCAGGCCCAAAAGCCCACCACCAAGCCCACCGGGTCGGGTTCGGGTTCCGGAACCCTAGCCCCGTCGAAATCCACCCTCTACGTCTCCAACCTCGACTACTCCCTCACCAACTCCGACCTCCACACCCTCTTCTCCCGCTTCGGCAAGATCGCCCGCGTCACCGTCCTCAAAGACCGCGACACCCGCCGGAGCCGCGGCGTCGCCTTCGTCCAGTTCGTCACGCGCGACGACGCCGTAAGGTCGGCGCGTGAGATGCACGGGAAGATTCTGAACGGCCGGAAGCTCTCGGCGTCGATCGCGGAGGATAACGGACGCGCCGCCGAGTTTATAAAGAAGAGGGAGTACAAGGACAAGAGCCGGTGCTACGAGTGCGGCGCCGAGGGGCACTTGAGTTATGAGTGCCCGAAGAACCAGCTGGGGCCGAGGGAGCGGCCGCCGCAGAAGAAAGTAAGGAGAGGCGGCGGCGGAGGAGGAGGAGGAGGTGGAGGTAGAGGGGGTGAGGCGCGTGGGGAGGACGAGGGGGAGTGGGAGAGTGGGGGCGAGAGGTTTGAGGATGATAATTGGGCGTCTGTGGTGGATGGTGGGGCCGGGCAGAGGTTGCTGTTGAGTGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGAAGAGGAAGAAGAAGATTAAGAAGGCTGGGTATTTTAGTGATGAGAGTGATCATGATGATGAGGATTAG

Protein Analysis

263

Amino Acids

29.01

Weight (kDa)

5.99

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 54 - 123 4.1e-20 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10400
fragaria_vesca FvH4_7g18730 FvH4_7g18730
malus_domestica MD01G1102800.v1.1
prunus_persica Prupe.2G208400_v2.0.a1
pyrus_communis pycom01g12930 pycom07g16330
rosa_chinensis RchiOBHm_Chr1g0362501
rosa_laevigata RLG00000027641
rosa_roxburghii Rroxscaffold_4G00294090
rosa_rugosa Rorug01G0298500
rosa_samantha Rh1AG307900 Rh1BG271000 Rh1CG288700 Rh1DG301200
rosa_wichuraiana Rw1G027320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 413
AccB1I GGYRCC 2 cut(s) 4, 458
AccBSI CCGCTC 1 cut(s) 514
AccII CGCG 9 cut(s) 240, 261, 279, 307, 309, 331, 383, 399, 589
AccIII TCCGGA 1 cut(s) 131
AcoI YGGCCR 2 cut(s) 358, 515
AcyI GRCGYC 6 cut(s) 5, 282, 315, 374, 459, 650
AfaI GTAC 1 cut(s) 428
AfiI CCNNNNNNNGG 1 cut(s) 678
AluBI AGCT 2 cut(s) 367, 499
AluI AGCT 2 cut(s) 367, 499
Alw26I GTCTC 1 cut(s) 172
Aor13HI TCCGGA 1 cut(s) 131
AoxI GGCC 5 cut(s) 87, 358, 503, 515, 669
AspLEI GCGC 6 cut(s) 7, 309, 331, 401, 461, 589
AspS9I GGNCC 3 cut(s) 88, 503, 669
AsuC2I CCSGG 2 cut(s) 115, 673
AsuHPI GGTGA 3 cut(s) 181, 235, 593
BaeGI GKGCMC 2 cut(s) 471, 488
BanI GGYRCC 2 cut(s) 4, 458
BarI GAAGNNNNNNTAC 2 cut(s) 410, 442
BbsI GAAGAC 1 cut(s) 48
BccI CCATC 1 cut(s) 656
BceAI ACGGC 2 cut(s) 302, 373
BclI TGATCA 1 cut(s) 772
BcnI CCSGG 2 cut(s) 115, 673
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 1 cut(s) 140
BfoI RGCGCY 2 cut(s) 8, 462
BglI GCCNNNNNGGC 1 cut(s) 86
BisI GCNGC 9 cut(s) 277, 280, 402, 457, 515, 518, 521, 544, 547
BlsI GCNGC 9 cut(s) 278, 281, 403, 458, 516, 519, 522, 545, 548
Bme1390I CCNGG 2 cut(s) 115, 673
BmgT120I GGNCC 3 cut(s) 88, 503, 669
BmiI GGNNCC 7 cut(s) 6, 130, 136, 275, 460, 504, 670
BmrFI CCNGG 2 cut(s) 115, 673
BmsI GCATC 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 493
BpuMI CCSGG 2 cut(s) 115, 673
BsaHI GRCGYC 6 cut(s) 5, 282, 315, 374, 459, 650
BsaJI CCNNGG 3 cut(s) 277, 462, 506
BsaWI WCCGGW 1 cut(s) 131
Bsc4I CCNNNNNNNGG 1 cut(s) 678
Bse118I RCCGGY 1 cut(s) 441
Bse1I ACTGG 1 cut(s) 295
BseAI TCCGGA 1 cut(s) 131
BseDI CCNNGG 3 cut(s) 277, 462, 506
BseGI GGATG 2 cut(s) 643, 667
BseLI CCNNNNNNNGG 1 cut(s) 678
BseNI ACTGG 1 cut(s) 295
BseSI GKGCMC 2 cut(s) 471, 488
BseX3I CGGCCG 2 cut(s) 358, 515
BseYI CCCAGC 2 cut(s) 499, 749
Bsh1236I CGCG 9 cut(s) 240, 261, 279, 307, 309, 331, 383, 399, 589
Bsh1285I CGRYCG 3 cut(s) 361, 381, 518
BshFI GGCC 5 cut(s) 89, 360, 505, 517, 671
BshNI GGYRCC 2 cut(s) 4, 458
BsiEI CGRYCG 3 cut(s) 361, 381, 518
BsiSI CCGG 6 cut(s) 114, 132, 271, 361, 442, 672
BslI CCNNNNNNNGG 1 cut(s) 678
BsmAI GTCTC 1 cut(s) 172
BsmBI CGTCTC 1 cut(s) 172
BsnI GGCC 5 cut(s) 89, 360, 505, 517, 671
Bsp1286I GDGCHC 2 cut(s) 471, 488
Bsp13I TCCGGA 1 cut(s) 131
Bsp143I GATC 3 cut(s) 231, 378, 772
BspANI GGCC 5 cut(s) 89, 360, 505, 517, 671
BspEI TCCGGA 1 cut(s) 131
BspFNI CGCG 9 cut(s) 240, 261, 279, 307, 309, 331, 383, 399, 589
BspHI TCATGA 1 cut(s) 775
BspLI GGNNCC 7 cut(s) 6, 130, 136, 275, 460, 504, 670
BspT107I GGYRCC 2 cut(s) 4, 458
BsrBI CCGCTC 1 cut(s) 514
BsrFI RCCGGY 1 cut(s) 441
BsrI ACTGG 1 cut(s) 295
BssAI RCCGGY 1 cut(s) 441
BssECI CCNNGG 3 cut(s) 277, 462, 506
BssMI GATC 3 cut(s) 231, 378, 772
BssNI GRCGYC 6 cut(s) 5, 282, 315, 374, 459, 650
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 4 cut(s) 11, 218, 413, 719
BstACI GRCGYC 6 cut(s) 5, 282, 315, 374, 459, 650
BstAPI GCANNNNNTGC 1 cut(s) 682
BstC8I GCNNGC 2 cut(s) 87, 238
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 2 cut(s) 643, 667
BstFNI CGCG 9 cut(s) 240, 261, 279, 307, 309, 331, 383, 399, 589
BstH2I RGCGCY 2 cut(s) 8, 462
BstHHI GCGC 6 cut(s) 7, 309, 331, 401, 461, 589
BstKTI GATC 3 cut(s) 234, 381, 775
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 3 cut(s) 231, 378, 772
BstMCI CGRYCG 3 cut(s) 361, 381, 518
BstMWI GCNNNNNNNGC 9 cut(s) 86, 267, 276, 337, 380, 453, 511, 520, 682
BstSCI CCNGG 2 cut(s) 113, 671
BstSLI GKGCMC 2 cut(s) 471, 488
BstUI CGCG 9 cut(s) 240, 261, 279, 307, 309, 331, 383, 399, 589
BstV2I GAAGAC 1 cut(s) 48
BstZI CGGCCG 2 cut(s) 358, 515
BsuRI GGCC 5 cut(s) 89, 360, 505, 517, 671
BtgI CCRYGG 1 cut(s) 277
BtsCI GGATG 2 cut(s) 643, 667
Cac8I GCNNGC 2 cut(s) 87, 238
CciI TCATGA 1 cut(s) 775
CciNI GCGGCCGC 1 cut(s) 515
CfoI GCGC 6 cut(s) 7, 309, 331, 401, 461, 589
Cfr10I RCCGGY 1 cut(s) 441
Cfr13I GGNCC 3 cut(s) 88, 503, 669
Cfr42I CCGCGG 1 cut(s) 280
CseI GACGC 6 cut(s) 229, 271, 323, 363, 405, 639
Csp6I GTAC 1 cut(s) 427
CviAII CATG 1 cut(s) 776
CviQI GTAC 1 cut(s) 427
DinI GGCGCC 2 cut(s) 6, 460
DpnI GATC 3 cut(s) 233, 380, 774
DpnII GATC 3 cut(s) 231, 378, 772
EaeI YGGCCR 2 cut(s) 358, 515
EagI CGGCCG 2 cut(s) 358, 515
Eam1104I CTCTTC 4 cut(s) 11, 218, 413, 719
EarI CTCTTC 4 cut(s) 11, 218, 413, 719
EciI GGCGGA 2 cut(s) 67, 564
EclXI CGGCCG 2 cut(s) 358, 515
Eco52I CGGCCG 2 cut(s) 358, 515
EgeI GGCGCC 2 cut(s) 6, 460
EheI GGCGCC 2 cut(s) 6, 460
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 1 cut(s) 779
FaiI YATR 3 cut(s) 413, 480, 777
FatI CATG 1 cut(s) 775
FauI CCCGC 4 cut(s) 90, 227, 245, 275
FbaI TGATCA 1 cut(s) 772
Fnu4HI GCNGC 9 cut(s) 277, 280, 402, 457, 515, 518, 521, 544, 547
FokI GGATG 2 cut(s) 650, 674
Fsp4HI GCNGC 9 cut(s) 277, 280, 402, 457, 515, 518, 521, 544, 547
FspBI CTAG 1 cut(s) 140
GlaI GCGC 6 cut(s) 6, 308, 330, 400, 460, 588
GluI GCNGC 9 cut(s) 277, 280, 402, 457, 515, 518, 521, 544, 547
GsaI CCCAGC 2 cut(s) 503, 753
HaeII RGCGCY 2 cut(s) 8, 462
HaeIII GGCC 5 cut(s) 89, 360, 505, 517, 671
HapII CCGG 6 cut(s) 114, 132, 271, 361, 442, 672
HgaI GACGC 6 cut(s) 229, 271, 323, 363, 405, 639
HhaI GCGC 6 cut(s) 7, 309, 331, 401, 461, 589
Hin1I GRCGYC 6 cut(s) 5, 282, 315, 374, 459, 650
Hin1II CATG 1 cut(s) 779
Hin6I GCGC 6 cut(s) 5, 307, 329, 399, 459, 587
HinP1I GCGC 6 cut(s) 5, 307, 329, 399, 459, 587
HinfI GANTC 2 cut(s) 53, 349
HpaII CCGG 6 cut(s) 114, 132, 271, 361, 442, 672
HphI GGTGA 3 cut(s) 181, 235, 593
Hpy188I TCNGA 2 cut(s) 199, 354
Hpy188III TCNNGA 2 cut(s) 132, 776
Hpy99I CGWCG 9 cut(s) 32, 35, 38, 41, 151, 287, 314, 317, 379
HpyAV CCTTC 2 cut(s) 298, 739
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 2 cut(s) 63, 340
HpyF10VI GCNNNNNNNGC 9 cut(s) 86, 267, 276, 337, 380, 453, 511, 520, 682
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 6 cut(s) 5, 282, 315, 374, 459, 650
Hsp92II CATG 1 cut(s) 779
HspAI GCGC 6 cut(s) 5, 307, 329, 399, 459, 587
KasI GGCGCC 2 cut(s) 4, 458
Kpn2I TCCGGA 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 772
KspI CCGCGG 1 cut(s) 280
Kzo9I GATC 3 cut(s) 231, 378, 772
LmnI GCTCC 3 cut(s) 21, 273, 511
LweI GCATC 1 cut(s) 327
MaeI CTAG 1 cut(s) 140
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 241, 301
MalI GATC 3 cut(s) 233, 380, 774
MbiI CCGCTC 1 cut(s) 514
MboI GATC 3 cut(s) 231, 378, 772
MhlI GDGCHC 2 cut(s) 471, 488
MluCI AATT 2 cut(s) 47, 643
Mly113I GGCGCC 2 cut(s) 5, 459
MmeI TCCRAC 2 cut(s) 195, 222
MroI TCCGGA 1 cut(s) 131
MseI TTAA 1 cut(s) 741
MslI CAYNNNNRTG 1 cut(s) 780
MspA1I CMGCKG 2 cut(s) 279, 499
MspI CCGG 6 cut(s) 114, 132, 271, 361, 442, 672
MspR9I CCNGG 2 cut(s) 115, 673
MvnI CGCG 9 cut(s) 240, 261, 279, 307, 309, 331, 383, 399, 589
MwoI GCNNNNNNNGC 9 cut(s) 86, 267, 276, 337, 380, 453, 511, 520, 682
NarI GGCGCC 2 cut(s) 5, 459
NciI CCSGG 2 cut(s) 115, 673
NdeII GATC 3 cut(s) 231, 378, 772
NlaIII CATG 1 cut(s) 779
NlaIV GGNNCC 7 cut(s) 6, 130, 136, 275, 460, 504, 670
NmeAIII GCCGAG 4 cut(s) 350, 430, 487, 531
NmuCI GTSAC 2 cut(s) 241, 301
NotI GCGGCCGC 1 cut(s) 515
PagI TCATGA 1 cut(s) 775
PcsI WCGNNNNNNNCGW 5 cut(s) 33, 36, 42, 297, 306
PfeI GAWTC 2 cut(s) 53, 349
PkrI GCNGC 9 cut(s) 278, 281, 403, 458, 516, 519, 522, 545, 548
Ple19I CGATCG 1 cut(s) 381
PluTI GGCGCC 2 cut(s) 8, 462
PsiI TTATAA 1 cut(s) 413
PspFI CCCAGC 2 cut(s) 499, 749
PspN4I GGNNCC 7 cut(s) 6, 130, 136, 275, 460, 504, 670
PspPI GGNCC 3 cut(s) 88, 503, 669
PvuI CGATCG 1 cut(s) 381
PvuII CAGCTG 1 cut(s) 499
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
RseI CAYNNNNRTG 1 cut(s) 780
SacII CCGCGG 1 cut(s) 280
SaqAI TTAA 1 cut(s) 741
SatI GCNGC 9 cut(s) 277, 280, 402, 457, 515, 518, 521, 544, 547
Sau3AI GATC 3 cut(s) 231, 378, 772
Sau96I GGNCC 3 cut(s) 88, 503, 669
ScrFI CCNGG 2 cut(s) 115, 673
SduI GDGCHC 2 cut(s) 471, 488
SfaNI GCATC 1 cut(s) 327
SfoI GGCGCC 2 cut(s) 6, 460
Sfr303I CCGCGG 1 cut(s) 280
SgrBI CCGCGG 1 cut(s) 280
SmiMI CAYNNNNRTG 1 cut(s) 780
SmlI CTYRAG 1 cut(s) 472
SmoI CTYRAG 1 cut(s) 472
Sse9I AATT 2 cut(s) 47, 643
SspDI GGCGCC 2 cut(s) 4, 458
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 2 cut(s) 113, 671
TaaI ACNGT 1 cut(s) 247
TaiI ACGT 1 cut(s) 168
TaqI TCGA 3 cut(s) 149, 177, 377
TasI AATT 2 cut(s) 47, 643
TatI WGTACW 1 cut(s) 426
TauI GCSGC 9 cut(s) 279, 282, 404, 459, 517, 520, 523, 546, 549
TfiI GAWTC 2 cut(s) 53, 349
Tru1I TTAA 1 cut(s) 741
Tru9I TTAA 1 cut(s) 741
TseFI GTSAC 2 cut(s) 241, 301
Tsp45I GTSAC 2 cut(s) 241, 301
TspGWI ACGGA 1 cut(s) 408
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.