Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0015500

Physical Location & Seq

Genomic Coordinates Forward (+)

13468057 .. 13468830

Gene Structure 774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027641

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCGCCAAAGAAGAAGAGGAGCGACGACGACGACGAAGACGAATTGGAATCCCTCTGCAACCGCTACCCGTCAGCCCCGCAGGCCCAAAAGCCCACCACCAAGCCCACCGGGTCGGGTTCGGGTTCCGGAACCCTAGCCCCCTCGAAATCCACTCTCTACGTCTCCAACCTCGACTACTCCCTCACCAACTCCGACCTCCACACCCTCTTCTCCCGCTTCGGCAAGATCGCCCGCGTCACCGTCCTCAAAGACCGCGACACCCGCCGGAGCCGCGGCGTCGCCTTCGTCCAGTTCGTCACGCGCGACGACGCCGCAAAGTCGGCTCGTGAGATGCACGGGAAGATTCTGAACGGCCGGAAGCTCTCGGCGTCGATCGCGGCGGATAACGGACGCGCCGCCGAGTTTATAAAGAAGAGGGAGTACAAGGACAAGAGCCGGTGCTACGAGTGCGGCGCCGAGGGGCACTTGAGTTATGAGTGCCCCAAGAACCAGCTGGGGCCGAGGGAGCGGCCGCCGCAGAAGAAAGCGAGGAGAGGCGGCGGAGGAGGAGGTGGGGGTAGAGGGGGGGAGGCGCGTGCGGAGGACGAGGGGGAGTGGGAGAGTGGGGGTGAGAGATTTGAGGATGATAATTGGGCGTCTGTGGTGGATGGTGGAGCGGGACAGAGGTTGCTGTTGAGTGAGGAGATGGAGGAGGAGGAGGAGAAGAGGAAGAAGAAGATTAAGAAAGCTGGGTATTTTAGTGATGAGAGTGATCATGATGATGAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051302 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

258

Amino Acids

28.34

Weight (kDa)

6.49

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	53 - 122	5.9e-21	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10400
fragaria_vesca	FvH4_7g18730 FvH4_7g18730
malus_domestica	MD01G1102800.v1.1
prunus_persica	Prupe.2G208400_v2.0.a1
pyrus_communis	pycom01g12930 pycom07g16330
rosa_chinensis	RchiOBHm_Chr1g0362501
rosa_laevigata	RLG00000027641
rosa_roxburghii	Rroxscaffold_4G00294090
rosa_rugosa	Rorug01G0298500
rosa_samantha	Rh1AG307900 Rh1BG271000 Rh1CG288700 Rh1DG301200
rosa_wichuraiana	Rw1G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	410
AccB1I	GGYRCC	2 cut(s)	4, 455
AccBSI	CCGCTC	2 cut(s)	511, 659
AccII	CGCG	8 cut(s)	237, 258, 276, 304, 306, 380, 396, 577
AccIII	TCCGGA	1 cut(s)	128
AcoI	YGGCCR	2 cut(s)	355, 512
AcyI	GRCGYC	6 cut(s)	5, 279, 312, 371, 456, 638
AfaI	GTAC	1 cut(s)	425
AluBI	AGCT	3 cut(s)	364, 496, 731
AluI	AGCT	3 cut(s)	364, 496, 731
Alw26I	GTCTC	1 cut(s)	169
Aor13HI	TCCGGA	1 cut(s)	128
AoxI	GGCC	4 cut(s)	84, 355, 500, 512
AspLEI	GCGC	5 cut(s)	7, 306, 398, 458, 577
AspS9I	GGNCC	2 cut(s)	85, 500
AsuC2I	CCSGG	1 cut(s)	112
AsuHPI	GGTGA	3 cut(s)	178, 232, 623
BaeGI	GKGCMC	2 cut(s)	468, 485
BanI	GGYRCC	2 cut(s)	4, 455
BarI	GAAGNNNNNNTAC	2 cut(s)	407, 439
BauI	CACGAG	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	45
BccI	CCATC	2 cut(s)	644, 682
BceAI	ACGGC	1 cut(s)	370
BclI	TGATCA	1 cut(s)	754
BcnI	CCSGG	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	137
BfoI	RGCGCY	2 cut(s)	8, 459
BglI	GCCNNNNNGGC	1 cut(s)	83
Bme1390I	CCNGG	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	85, 500
BmiI	GGNNCC	6 cut(s)	6, 127, 133, 272, 457, 501
BmrFI	CCNGG	1 cut(s)	112
BmsI	GCATC	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	490
BpuMI	CCSGG	1 cut(s)	112
BsaHI	GRCGYC	6 cut(s)	5, 279, 312, 371, 456, 638
BsaJI	CCNNGG	3 cut(s)	274, 459, 503
BsaWI	WCCGGW	1 cut(s)	128
Bse118I	RCCGGY	1 cut(s)	438
Bse1I	ACTGG	1 cut(s)	292
BseAI	TCCGGA	1 cut(s)	128
BseDI	CCNNGG	3 cut(s)	274, 459, 503
BseGI	GGATG	2 cut(s)	631, 655
BseNI	ACTGG	1 cut(s)	292
BseRI	GAGGAG	9 cut(s)	34, 547, 561, 564, 698, 707, 710, 713, 716
BseSI	GKGCMC	2 cut(s)	468, 485
BseX3I	CGGCCG	2 cut(s)	355, 512
BseYI	CCCAGC	2 cut(s)	496, 731
Bsh1236I	CGCG	8 cut(s)	237, 258, 276, 304, 306, 380, 396, 577
Bsh1285I	CGRYCG	3 cut(s)	358, 378, 515
BshFI	GGCC	4 cut(s)	86, 357, 502, 514
BshNI	GGYRCC	2 cut(s)	4, 455
BsiEI	CGRYCG	3 cut(s)	358, 378, 515
BsiSI	CCGG	5 cut(s)	111, 129, 268, 358, 439
BslFI	GGGAC	1 cut(s)	675
BsmAI	GTCTC	1 cut(s)	169
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	675
BsnI	GGCC	4 cut(s)	86, 357, 502, 514
Bsp1286I	GDGCHC	2 cut(s)	468, 485
Bsp13I	TCCGGA	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	228, 375, 754
BspANI	GGCC	4 cut(s)	86, 357, 502, 514
BspEI	TCCGGA	1 cut(s)	128
BspFNI	CGCG	8 cut(s)	237, 258, 276, 304, 306, 380, 396, 577
BspHI	TCATGA	1 cut(s)	757
BspLI	GGNNCC	6 cut(s)	6, 127, 133, 272, 457, 501
BspT107I	GGYRCC	2 cut(s)	4, 455
BsrBI	CCGCTC	2 cut(s)	511, 659
BsrFI	RCCGGY	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	292
BssAI	RCCGGY	1 cut(s)	438
BssECI	CCNNGG	3 cut(s)	274, 459, 503
BssMI	GATC	3 cut(s)	228, 375, 754
BssNI	GRCGYC	6 cut(s)	5, 279, 312, 371, 456, 638
BssSI	CACGAG	1 cut(s)	327
Bst2BI	CACGAG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	4 cut(s)	11, 215, 410, 701
BstACI	GRCGYC	6 cut(s)	5, 279, 312, 371, 456, 638
BstC8I	GCNNGC	3 cut(s)	84, 235, 579
BstDSI	CCRYGG	1 cut(s)	274
BstF5I	GGATG	2 cut(s)	631, 655
BstFNI	CGCG	8 cut(s)	237, 258, 276, 304, 306, 380, 396, 577
BstH2I	RGCGCY	2 cut(s)	8, 459
BstHHI	GCGC	5 cut(s)	7, 306, 398, 458, 577
BstKTI	GATC	3 cut(s)	231, 378, 757
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	3 cut(s)	228, 375, 754
BstMCI	CGRYCG	3 cut(s)	358, 378, 515
BstMWI	GCNNNNNNNGC	8 cut(s)	83, 264, 273, 323, 377, 450, 508, 517
BstSCI	CCNGG	1 cut(s)	110
BstSLI	GKGCMC	2 cut(s)	468, 485
BstUI	CGCG	8 cut(s)	237, 258, 276, 304, 306, 380, 396, 577
BstV2I	GAAGAC	1 cut(s)	45
BstZI	CGGCCG	2 cut(s)	355, 512
BsuRI	GGCC	4 cut(s)	86, 357, 502, 514
BtgI	CCRYGG	1 cut(s)	274
BtsCI	GGATG	2 cut(s)	631, 655
Cac8I	GCNNGC	3 cut(s)	84, 235, 579
CciI	TCATGA	1 cut(s)	757
CciNI	GCGGCCGC	1 cut(s)	512
CfoI	GCGC	5 cut(s)	7, 306, 398, 458, 577
Cfr10I	RCCGGY	1 cut(s)	438
Cfr13I	GGNCC	2 cut(s)	85, 500
Cfr42I	CCGCGG	1 cut(s)	277
CseI	GACGC	6 cut(s)	226, 268, 320, 360, 402, 627
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	1 cut(s)	758
CviQI	GTAC	1 cut(s)	424
DinI	GGCGCC	2 cut(s)	6, 457
DpnI	GATC	3 cut(s)	230, 377, 756
DpnII	GATC	3 cut(s)	228, 375, 754
EaeI	YGGCCR	2 cut(s)	355, 512
EagI	CGGCCG	2 cut(s)	355, 512
Eam1104I	CTCTTC	4 cut(s)	11, 215, 410, 701
EarI	CTCTTC	4 cut(s)	11, 215, 410, 701
EciI	GGCGGA	2 cut(s)	398, 558
EclXI	CGGCCG	2 cut(s)	355, 512
Eco52I	CGGCCG	2 cut(s)	355, 512
EgeI	GGCGCC	2 cut(s)	6, 457
EheI	GGCGCC	2 cut(s)	6, 457
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	1 cut(s)	761
FaiI	YATR	3 cut(s)	410, 477, 759
FaqI	GGGAC	1 cut(s)	675
FatI	CATG	1 cut(s)	757
FauI	CCCGC	5 cut(s)	87, 224, 242, 272, 652
FbaI	TGATCA	1 cut(s)	754
FokI	GGATG	2 cut(s)	638, 662
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	5 cut(s)	6, 305, 397, 457, 576
GsaI	CCCAGC	2 cut(s)	500, 735
HaeII	RGCGCY	2 cut(s)	8, 459
HaeIII	GGCC	4 cut(s)	86, 357, 502, 514
HapII	CCGG	5 cut(s)	111, 129, 268, 358, 439
HgaI	GACGC	6 cut(s)	226, 268, 320, 360, 402, 627
HhaI	GCGC	5 cut(s)	7, 306, 398, 458, 577
Hin1I	GRCGYC	6 cut(s)	5, 279, 312, 371, 456, 638
Hin1II	CATG	1 cut(s)	761
Hin6I	GCGC	5 cut(s)	5, 304, 396, 456, 575
HinP1I	GCGC	5 cut(s)	5, 304, 396, 456, 575
HinfI	GANTC	2 cut(s)	50, 346
HpaII	CCGG	5 cut(s)	111, 129, 268, 358, 439
HphI	GGTGA	3 cut(s)	178, 232, 623
Hpy188I	TCNGA	2 cut(s)	196, 351
Hpy188III	TCNNGA	3 cut(s)	129, 329, 758
Hpy99I	CGWCG	8 cut(s)	29, 32, 35, 38, 284, 311, 314, 376
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	2 cut(s)	60, 337
HpyF10VI	GCNNNNNNNGC	8 cut(s)	83, 264, 273, 323, 377, 450, 508, 517
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	6 cut(s)	5, 279, 312, 371, 456, 638
Hsp92II	CATG	1 cut(s)	761
HspAI	GCGC	5 cut(s)	5, 304, 396, 456, 575
KasI	GGCGCC	2 cut(s)	4, 455
Kpn2I	TCCGGA	1 cut(s)	128
Ksp22I	TGATCA	1 cut(s)	754
KspI	CCGCGG	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	228, 375, 754
LmnI	GCTCC	4 cut(s)	21, 270, 508, 656
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	2 cut(s)	238, 298
MalI	GATC	3 cut(s)	230, 377, 756
MbiI	CCGCTC	2 cut(s)	511, 659
MboI	GATC	3 cut(s)	228, 375, 754
MhlI	GDGCHC	2 cut(s)	468, 485
MluCI	AATT	2 cut(s)	44, 631
Mly113I	GGCGCC	2 cut(s)	5, 456
MmeI	TCCRAC	2 cut(s)	192, 219
MroI	TCCGGA	1 cut(s)	128
MseI	TTAA	1 cut(s)	723
MslI	CAYNNNNRTG	1 cut(s)	762
MspA1I	CMGCKG	2 cut(s)	276, 496
MspI	CCGG	5 cut(s)	111, 129, 268, 358, 439
MspR9I	CCNGG	1 cut(s)	112
MvnI	CGCG	8 cut(s)	237, 258, 276, 304, 306, 380, 396, 577
MwoI	GCNNNNNNNGC	8 cut(s)	83, 264, 273, 323, 377, 450, 508, 517
NarI	GGCGCC	2 cut(s)	5, 456
NciI	CCSGG	1 cut(s)	112
NdeII	GATC	3 cut(s)	228, 375, 754
NlaIII	CATG	1 cut(s)	761
NlaIV	GGNNCC	6 cut(s)	6, 127, 133, 272, 457, 501
NmeAIII	GCCGAG	4 cut(s)	347, 427, 484, 528
NmuCI	GTSAC	2 cut(s)	238, 298
NotI	GCGGCCGC	1 cut(s)	512
PagI	TCATGA	1 cut(s)	757
PcsI	WCGNNNNNNNCGW	4 cut(s)	33, 39, 294, 303
PfeI	GAWTC	2 cut(s)	50, 346
Ple19I	CGATCG	1 cut(s)	378
PluTI	GGCGCC	2 cut(s)	8, 459
PsiI	TTATAA	1 cut(s)	410
PspFI	CCCAGC	2 cut(s)	496, 731
PspN4I	GGNNCC	6 cut(s)	6, 127, 133, 272, 457, 501
PspPI	GGNCC	2 cut(s)	85, 500
PvuI	CGATCG	1 cut(s)	378
PvuII	CAGCTG	1 cut(s)	496
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	762
SacII	CCGCGG	1 cut(s)	277
SaqAI	TTAA	1 cut(s)	723
Sau3AI	GATC	3 cut(s)	228, 375, 754
Sau96I	GGNCC	2 cut(s)	85, 500
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	2 cut(s)	468, 485
SetI	ASST	8 cut(s)	165, 174, 201, 366, 498, 556, 671, 733
SfaNI	GCATC	1 cut(s)	324
SfoI	GGCGCC	2 cut(s)	6, 457
Sfr303I	CCGCGG	1 cut(s)	277
SgrBI	CCGCGG	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	762
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
Sse9I	AATT	2 cut(s)	44, 631
SspDI	GGCGCC	2 cut(s)	4, 455
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	3 cut(s)	146, 174, 374
TasI	AATT	2 cut(s)	44, 631
TatI	WGTACW	1 cut(s)	423
TfiI	GAWTC	2 cut(s)	50, 346
Tru1I	TTAA	1 cut(s)	723
Tru9I	TTAA	1 cut(s)	723
TseFI	GTSAC	2 cut(s)	238, 298
Tsp45I	GTSAC	2 cut(s)	238, 298
TspGWI	ACGGA	1 cut(s)	405
XcmI	CCANNNNNNNNNTGG	1 cut(s)	493
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.