Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0015500

Physical Location & Seq

Genomic Coordinates Reverse (-)

13531769 .. 13532554

Gene Structure 786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g12930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCGGAGAAGAGGAGGAAGAAGAAGAACAGCAGCGATGAAGACGAAGACGACACCTTCTACTACCGTTACGCCTCCTCCGCCCCACAAACCCAAAAACCCAAAAACCAAAAACCGCTAAGTGCGTCCGGCTCAGGAAACCTAGCACCATCGAAATCGACCCTCTACGTCTCCAACCTCGACTACTCCCTCACCAATTCGGACCTCCACACCCTCTTCTCCCACTTCGGCAAGATCGCCCGAGTCACCGTCCTCAAAAATCGCGAGACCCGCCAGAGCCGCGGCGTCGCCTTCGTCCAATTCGTGTCCCGCACCGATGCTTCCGCGGCGGCGAGTGAGATGCACGGGAAGATACTTAACGGGAGAAAGCTATCGGCCTCCATCGCGGCTGACAACGGCCGGGCCACCGAGTTCATTCGGAAGAGGGAGTACAAGGACAAGAGCCGATGCTATGAGTGCGGCGAGGAGGGGCACTTGTCGTACGAGTGCCCGAAGAACCAGCTGGGGCCCAGGGAGCGGCCGCCGCCGAAGCGGGTGAAGAGAGGTGGCGGTGGTGGTGGTGGTGGTGGTAGTGGTAATGGCAGCGGGGCGGCGCCTGTGGACGAGGAGGAGTATGATAGTGGTGGTGAGAAGTTTGAGGATGATAATTGGGCGTCGGTGGTGGATGATGGGGCTGATTTGAGGTTGCGGTTGGCAGCGGAGGAGGCGGAGGAGAAGAAGAGGAAGAAGGTTACGAAGAAAGCTGGTTACTTTAGTGATGAGAGTGACAACGATGATGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051302 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

262

Amino Acids

28.68

Weight (kDa)

7.65

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_5	PF13893	32 - 129	1.3e-06	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	55 - 124	3.5e-21	RNA recognition motif
zf-CCHC	PF00098	149 - 165	5.1e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10400
fragaria_vesca	FvH4_7g18730 FvH4_7g18730
malus_domestica	MD01G1102800.v1.1
prunus_persica	Prupe.2G208400_v2.0.a1
pyrus_communis	pycom01g12930 pycom07g16330
rosa_chinensis	RchiOBHm_Chr1g0362501
rosa_laevigata	RLG00000027641
rosa_roxburghii	Rroxscaffold_4G00294090
rosa_rugosa	Rorug01G0298500
rosa_samantha	Rh1AG307900 Rh1BG271000 Rh1CG288700 Rh1DG301200
rosa_wichuraiana	Rw1G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	592
AccBSI	CCGCTC	1 cut(s)	517
AccII	CGCG	4 cut(s)	264, 282, 326, 386
AcoI	YGGCCR	2 cut(s)	397, 518
AcyI	GRCGYC	3 cut(s)	285, 593, 653
AfaI	GTAC	2 cut(s)	431, 482
AfiI	CCNNNNNNNGG	1 cut(s)	516
AjnI	CCWGG	1 cut(s)	509
AluBI	AGCT	3 cut(s)	370, 502, 743
AluI	AGCT	3 cut(s)	370, 502, 743
Alw26I	GTCTC	2 cut(s)	175, 260
Ama87I	CYCGRG	1 cut(s)	240
AoxI	GGCC	5 cut(s)	375, 397, 402, 506, 518
ApaI	GGGCCC	1 cut(s)	510
ApeKI	GCWGC	3 cut(s)	33, 582, 695
AspLEI	GCGC	1 cut(s)	595
AspS9I	GGNCC	4 cut(s)	202, 402, 506, 507
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	4 cut(s)	184, 238, 547, 638
AvaI	CYCGRG	1 cut(s)	240
AvaII	GGWCC	1 cut(s)	202
BaeGI	GKGCMC	3 cut(s)	474, 491, 510
BanI	GGYRCC	1 cut(s)	592
BanII	GRGCYC	1 cut(s)	510
BarI	GAAGNNNNNNTAC	2 cut(s)	413, 445
BbsI	GAAGAC	2 cut(s)	48, 54
BbvI	GCAGC	3 cut(s)	45, 594, 707
BccI	CCATC	3 cut(s)	157, 389, 662
BceAI	ACGGC	1 cut(s)	412
BcgI	CGANNNNNNTGC	2 cut(s)	322, 356
BciT130I	CCWGG	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	401
BcoDI	GTCTC	2 cut(s)	175, 260
BfaI	CTAG	1 cut(s)	143
BfoI	RGCGCY	1 cut(s)	596
Bme1390I	CCNGG	2 cut(s)	401, 511
Bme18I	GGWCC	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	240
BmgT120I	GGNCC	4 cut(s)	202, 402, 506, 507
BmiI	GGNNCC	3 cut(s)	507, 508, 594
BmrFI	CCNGG	2 cut(s)	401, 511
BmsI	GCATC	3 cut(s)	307, 330, 437
BpiI	GAAGAC	2 cut(s)	48, 54
Bpu10I	CCTNAGC	1 cut(s)	133
BpuMI	CCSGG	1 cut(s)	401
BsaHI	GRCGYC	3 cut(s)	285, 593, 653
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	4 cut(s)	280, 324, 509, 510
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	516
BseBI	CCWGG	1 cut(s)	511
BseDI	CCNNGG	4 cut(s)	280, 324, 509, 510
BseGI	GGATG	2 cut(s)	646, 670
BseLI	CCNNNNNNNGG	1 cut(s)	516
BseMII	CTCAG	1 cut(s)	147
BseRI	GAGGAG	7 cut(s)	28, 67, 479, 620, 623, 716, 725
BseSI	GKGCMC	3 cut(s)	474, 491, 510
BseX3I	CGGCCG	2 cut(s)	397, 518
BseXI	GCAGC	3 cut(s)	45, 594, 707
BseYI	CCCAGC	1 cut(s)	502
Bsh1236I	CGCG	4 cut(s)	264, 282, 326, 386
Bsh1285I	CGRYCG	2 cut(s)	400, 521
BshFI	GGCC	5 cut(s)	377, 399, 404, 508, 520
BshNI	GGYRCC	1 cut(s)	592
BsiEI	CGRYCG	2 cut(s)	400, 521
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	129, 400
BsiWI	CGTACG	1 cut(s)	480
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	516
BsmAI	GTCTC	2 cut(s)	175, 260
BsmBI	CGTCTC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	5 cut(s)	377, 399, 404, 508, 520
Bso31I	GGTCTC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	240
Bsp120I	GGGCCC	1 cut(s)	506
Bsp1286I	GDGCHC	3 cut(s)	474, 491, 510
Bsp143I	GATC	1 cut(s)	234
Bsp68I	TCGCGA	1 cut(s)	264
BspANI	GGCC	5 cut(s)	377, 399, 404, 508, 520
BspCNI	CTCAG	1 cut(s)	146
BspFNI	CGCG	4 cut(s)	264, 282, 326, 386
BspLI	GGNNCC	3 cut(s)	507, 508, 594
BspT107I	GGYRCC	1 cut(s)	592
BspTNI	GGTCTC	1 cut(s)	260
BsrBI	CCGCTC	1 cut(s)	517
BssECI	CCNNGG	4 cut(s)	280, 324, 509, 510
BssMI	GATC	1 cut(s)	234
BssNI	GRCGYC	3 cut(s)	285, 593, 653
Bst2UI	CCWGG	1 cut(s)	511
Bst4CI	ACNGT	2 cut(s)	68, 250
Bst6I	CTCTTC	5 cut(s)	5, 221, 416, 533, 713
BstACI	GRCGYC	3 cut(s)	285, 593, 653
BstDEI	CTNAG	2 cut(s)	119, 133
BstDSI	CCRYGG	2 cut(s)	280, 324
BstF5I	GGATG	2 cut(s)	646, 670
BstFNI	CGCG	4 cut(s)	264, 282, 326, 386
BstH2I	RGCGCY	1 cut(s)	596
BstHHI	GCGC	1 cut(s)	595
BstKTI	GATC	1 cut(s)	237
BstMAI	GTCTC	2 cut(s)	175, 260
BstMBI	GATC	1 cut(s)	234
BstMCI	CGRYCG	2 cut(s)	400, 521
BstNI	CCWGG	1 cut(s)	511
BstSCI	CCNGG	2 cut(s)	399, 509
BstSLI	GKGCMC	3 cut(s)	474, 491, 510
BstUI	CGCG	4 cut(s)	264, 282, 326, 386
BstV1I	GCAGC	3 cut(s)	45, 594, 707
BstV2I	GAAGAC	2 cut(s)	48, 54
BstZI	CGGCCG	2 cut(s)	397, 518
BsuRI	GGCC	5 cut(s)	377, 399, 404, 508, 520
BtgI	CCRYGG	2 cut(s)	280, 324
BtgZI	GCGATG	2 cut(s)	51, 367
BtsCI	GGATG	2 cut(s)	646, 670
BtuMI	TCGCGA	1 cut(s)	264
CciNI	GCGGCCGC	1 cut(s)	518
CfoI	GCGC	1 cut(s)	595
Cfr13I	GGNCC	4 cut(s)	202, 402, 506, 507
Cfr42I	CCGCGG	2 cut(s)	283, 327
CseI	GACGC	3 cut(s)	114, 274, 642
Csp6I	GTAC	2 cut(s)	430, 481
CviQI	GTAC	2 cut(s)	430, 481
DdeI	CTNAG	2 cut(s)	119, 133
DinI	GGCGCC	1 cut(s)	594
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
EaeI	YGGCCR	2 cut(s)	397, 518
EagI	CGGCCG	2 cut(s)	397, 518
Eam1104I	CTCTTC	5 cut(s)	5, 221, 416, 533, 713
EarI	CTCTTC	5 cut(s)	5, 221, 416, 533, 713
EciI	GGCGGA	3 cut(s)	20, 70, 722
EclXI	CGGCCG	2 cut(s)	397, 518
Eco24I	GRGCYC	1 cut(s)	510
Eco31I	GGTCTC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	202
Eco52I	CGGCCG	2 cut(s)	397, 518
Eco88I	CYCGRG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	509
EcoT38I	GRGCYC	1 cut(s)	510
EgeI	GGCGCC	1 cut(s)	594
EheI	GGCGCC	1 cut(s)	594
Esp3I	CGTCTC	1 cut(s)	175
FaiI	YATR	2 cut(s)	453, 615
FaqI	GGGAC	1 cut(s)	292
FauI	CCCGC	4 cut(s)	278, 317, 525, 578
FokI	GGATG	2 cut(s)	653, 677
FriOI	GRGCYC	1 cut(s)	510
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	1 cut(s)	594
GsaI	CCCAGC	1 cut(s)	506
HaeII	RGCGCY	1 cut(s)	596
HaeIII	GGCC	5 cut(s)	377, 399, 404, 508, 520
HapII	CCGG	2 cut(s)	129, 400
HgaI	GACGC	3 cut(s)	114, 274, 642
HhaI	GCGC	1 cut(s)	595
Hin1I	GRCGYC	3 cut(s)	285, 593, 653
Hin6I	GCGC	1 cut(s)	593
HinP1I	GCGC	1 cut(s)	593
HinfI	GANTC	1 cut(s)	243
HpaII	CCGG	2 cut(s)	129, 400
HphI	GGTGA	4 cut(s)	184, 238, 547, 638
Hpy166II	GTNNAC	1 cut(s)	601
Hpy188I	TCNGA	2 cut(s)	202, 420
Hpy188III	TCNNGA	2 cut(s)	135, 263
Hpy8I	GTNNAC	1 cut(s)	601
Hpy99I	CGWCG	2 cut(s)	290, 658
HpyAV	CCTTC	3 cut(s)	67, 301, 721
HpyCH4III	ACNGT	2 cut(s)	68, 250
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	1 cut(s)	343
HpyF3I	CTNAG	2 cut(s)	119, 133
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	3 cut(s)	285, 593, 653
HspAI	GCGC	1 cut(s)	593
KasI	GGCGCC	1 cut(s)	592
KspI	CCGCGG	2 cut(s)	283, 327
Kzo9I	GATC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	514
Lsp1109I	GCAGC	3 cut(s)	45, 594, 707
LweI	GCATC	3 cut(s)	307, 330, 437
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	5 cut(s)	68, 244, 730, 746, 764
MalI	GATC	1 cut(s)	236
MbiI	CCGCTC	1 cut(s)	517
MboI	GATC	1 cut(s)	234
MhlI	GDGCHC	3 cut(s)	474, 491, 510
MluCI	AATT	3 cut(s)	196, 299, 646
Mly113I	GGCGCC	1 cut(s)	593
MlyI	GAGTC	1 cut(s)	252
MmeI	TCCRAC	1 cut(s)	198
MseI	TTAA	1 cut(s)	357
MspA1I	CMGCKG	5 cut(s)	282, 326, 502, 585, 698
MspI	CCGG	2 cut(s)	129, 400
MspR9I	CCNGG	2 cut(s)	401, 511
MvaI	CCWGG	1 cut(s)	511
MvnI	CGCG	4 cut(s)	264, 282, 326, 386
NarI	GGCGCC	1 cut(s)	593
NciI	CCSGG	1 cut(s)	401
NdeII	GATC	1 cut(s)	234
NlaIV	GGNNCC	3 cut(s)	507, 508, 594
NmuCI	GTSAC	2 cut(s)	244, 764
NotI	GCGGCCGC	1 cut(s)	518
NruI	TCGCGA	1 cut(s)	264
PasI	CCCWGGG	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
Pfl23II	CGTACG	1 cut(s)	480
PleI	GAGTC	1 cut(s)	251
PluTI	GGCGCC	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	509
PspFI	CCCAGC	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	509
PspLI	CGTACG	1 cut(s)	480
PspN4I	GGNNCC	3 cut(s)	507, 508, 594
PspOMI	GGGCCC	1 cut(s)	506
PspPI	GGNCC	4 cut(s)	202, 402, 506, 507
PvuII	CAGCTG	1 cut(s)	502
RruI	TCGCGA	1 cut(s)	264
RsaI	GTAC	2 cut(s)	431, 482
RsaNI	GTAC	2 cut(s)	430, 481
SacII	CCGCGG	2 cut(s)	283, 327
SaqAI	TTAA	1 cut(s)	357
Sau3AI	GATC	1 cut(s)	234
Sau96I	GGNCC	4 cut(s)	202, 402, 506, 507
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	2 cut(s)	401, 511
SduI	GDGCHC	3 cut(s)	474, 491, 510
SfaNI	GCATC	3 cut(s)	307, 330, 437
SfoI	GGCGCC	1 cut(s)	594
Sfr303I	CCGCGG	2 cut(s)	283, 327
SgrBI	CCGCGG	2 cut(s)	283, 327
SinI	GGWCC	1 cut(s)	202
Sse9I	AATT	3 cut(s)	196, 299, 646
SspDI	GGCGCC	1 cut(s)	592
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	2 cut(s)	399, 509
TaaI	ACNGT	2 cut(s)	68, 250
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	3 cut(s)	152, 158, 180
TasI	AATT	3 cut(s)	196, 299, 646
TatI	WGTACW	1 cut(s)	429
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TseFI	GTSAC	2 cut(s)	244, 764
TseI	GCWGC	3 cut(s)	33, 582, 695
Tsp45I	GTSAC	2 cut(s)	244, 764
TspDTI	ATGAA	2 cut(s)	54, 403
VpaK11BI	GGWCC	1 cut(s)	202
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.