Zinc finger CCHC-type and RNA-binding motif-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G10400 |
| fragaria_vesca | FvH4_7g18730 FvH4_7g18730 |
| malus_domestica | MD01G1102800.v1.1 |
| prunus_persica | Prupe.2G208400_v2.0.a1 |
| pyrus_communis | pycom01g12930 pycom07g16330 |
| rosa_chinensis | RchiOBHm_Chr1g0362501 |
| rosa_laevigata | RLG00000027641 |
| rosa_roxburghii | Rroxscaffold_4G00294090 |
| rosa_rugosa | Rorug01G0298500 |
| rosa_samantha | Rh1AG307900 Rh1BG271000 Rh1CG288700 Rh1DG301200 |
| rosa_wichuraiana | Rw1G027320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 800 |
| Acc65I | GGTACC | 1 cut(s) | 1404 |
| AccB1I | GGYRCC | 2 cut(s) | 974, 1404 |
| AccI | GTMKAC | 1 cut(s) | 2215 |
| AciI | CCGC | 7 cut(s) | 440, 978, 1082, 1939, 2438, 2609, 2731 |
| AclWI | GGATC | 3 cut(s) | 1278, 1291, 2360 |
| AcoI | YGGCCR | 1 cut(s) | 2900 |
| AcsI | RAATTY | 4 cut(s) | 524, 1678, 1699, 2780 |
| AcuI | CTGAAG | 2 cut(s) | 152, 942 |
| AcvI | CACGTG | 2 cut(s) | 560, 2520 |
| AfaI | GTAC | 9 cut(s) | 644, 1034, 1202, 1406, 1516, 1826, 2477, 2618, 2761 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 108, 560, 1506, 2021, 2510, 2756, 2889, 2909 |
| AflII | CTTAAG | 1 cut(s) | 1580 |
| AflIII | ACRYGT | 1 cut(s) | 2517 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 2395, 2521 |
| AjnI | CCWGG | 3 cut(s) | 211, 907, 2033 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2004, 2036, 2465, 2497 |
| Alw26I | GTCTC | 8 cut(s) | 30, 91, 1127, 1140, 1491, 2747, 2881, 2941 |
| AlwI | GGATC | 3 cut(s) | 1278, 1291, 2360 |
| Ama87I | CYCGRG | 1 cut(s) | 1204 |
| AoxI | GGCC | 3 cut(s) | 1179, 2036, 2900 |
| ApeKI | GCWGC | 5 cut(s) | 497, 500, 1613, 1616, 3068 |
| ApoI | RAATTY | 4 cut(s) | 524, 1678, 1699, 2780 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 685, 1575 |
| Asp718I | GGTACC | 1 cut(s) | 1404 |
| AspLEI | GCGC | 1 cut(s) | 566 |
| AspS9I | GGNCC | 3 cut(s) | 551, 2031, 2556 |
| AsuHPI | GGTGA | 3 cut(s) | 499, 1470, 3017 |
| AsuII | TTCGAA | 1 cut(s) | 1844 |
| AvaI | CYCGRG | 1 cut(s) | 1204 |
| AvaII | GGWCC | 3 cut(s) | 551, 2031, 2556 |
| AxyI | CCTNAGG | 2 cut(s) | 1608, 2381 |
| BaeGI | GKGCMC | 1 cut(s) | 977 |
| BalI | TGGCCA | 1 cut(s) | 2902 |
| BamHI | GGATCC | 1 cut(s) | 1283 |
| BanI | GGYRCC | 2 cut(s) | 974, 1404 |
| BanII | GRGCYC | 2 cut(s) | 423, 993 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 128, 160 |
| BauI | CACGAG | 1 cut(s) | 2884 |
| BbrPI | CACGTG | 2 cut(s) | 560, 2520 |
| BbsI | GAAGAC | 9 cut(s) | 378, 811, 835, 1002, 1098, 2101, 2123, 2856, 2911 |
| BbvCI | CCTCAGC | 1 cut(s) | 2859 |
| BbvI | GCAGC | 5 cut(s) | 487, 509, 1600, 1603, 3080 |
| BccI | CCATC | 9 cut(s) | 478, 542, 1275, 1525, 1597, 1828, 2504, 2728, 2911 |
| BceAI | ACGGC | 3 cut(s) | 664, 2274, 2699 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 106, 140 |
| BciT130I | CCWGG | 3 cut(s) | 213, 909, 2035 |
| BciVI | GTATCC | 1 cut(s) | 1547 |
| BclI | TGATCA | 3 cut(s) | 610, 1371, 1885 |
| BcoDI | GTCTC | 8 cut(s) | 30, 91, 1127, 1140, 1491, 2747, 2881, 2941 |
| BfaI | CTAG | 6 cut(s) | 140, 369, 378, 2100, 2564, 2583 |
| BfmI | CTRYAG | 4 cut(s) | 968, 1162, 1617, 2505 |
| BfoI | RGCGCY | 1 cut(s) | 567 |
| BfrI | CTTAAG | 1 cut(s) | 1580 |
| BfuI | GTATCC | 1 cut(s) | 1547 |
| BglII | AGATCT | 3 cut(s) | 454, 1360, 2161 |
| BisI | GCNGC | 6 cut(s) | 498, 501, 1082, 1614, 1617, 3069 |
| BlsI | GCNGC | 6 cut(s) | 499, 502, 1083, 1615, 1618, 3070 |
| Bme1390I | CCNGG | 3 cut(s) | 213, 909, 2035 |
| Bme18I | GGWCC | 3 cut(s) | 551, 2031, 2556 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 2395, 2521 |
| BmeT110I | CYCGRG | 1 cut(s) | 1204 |
| BmgT120I | GGNCC | 3 cut(s) | 551, 2031, 2556 |
| BmiI | GGNNCC | 8 cut(s) | 24, 705, 976, 1285, 1406, 1783, 2032, 2182 |
| BmrFI | CCNGG | 3 cut(s) | 213, 909, 2035 |
| BmsI | GCATC | 8 cut(s) | 874, 1231, 2279, 2323, 2398, 2587, 2596, 2635 |
| BpiI | GAAGAC | 9 cut(s) | 378, 811, 835, 1002, 1098, 2101, 2123, 2856, 2911 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 25, 57, 2322, 2354 |
| BpmI | CTGGAG | 2 cut(s) | 291, 1070 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2859 |
| Bpu14I | TTCGAA | 1 cut(s) | 1844 |
| BpuEI | CTTGAG | 1 cut(s) | 2711 |
| BsaAI | YACGTR | 2 cut(s) | 560, 2520 |
| BsaI | GGTCTC | 2 cut(s) | 30, 91 |
| BsaJI | CCNNGG | 4 cut(s) | 675, 1336, 1416, 1894 |
| BsaWI | WCCGGW | 1 cut(s) | 586 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 573, 603 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 108, 560, 1506, 2021, 2510, 2756, 2889, 2909 |
| Bse1I | ACTGG | 3 cut(s) | 264, 475, 2761 |
| Bse21I | CCTNAGG | 2 cut(s) | 1608, 2381 |
| Bse3DI | GCAATG | 4 cut(s) | 1182, 1494, 1658, 2671 |
| BseBI | CCWGG | 3 cut(s) | 213, 909, 2035 |
| BseDI | CCNNGG | 4 cut(s) | 675, 1336, 1416, 1894 |
| BseGI | GGATG | 8 cut(s) | 1246, 1262, 1972, 2466, 2602, 2611, 2739, 2851 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 108, 560, 1506, 2021, 2510, 2756, 2889, 2909 |
| BseMI | GCAATG | 4 cut(s) | 1182, 1494, 1658, 2671 |
| BseMII | CTCAG | 6 cut(s) | 436, 1821, 2372, 2436, 2742, 2850 |
| BseNI | ACTGG | 3 cut(s) | 264, 475, 2761 |
| BseRI | GAGGAG | 1 cut(s) | 1748 |
| BseSI | GKGCMC | 1 cut(s) | 977 |
| BseXI | GCAGC | 5 cut(s) | 487, 509, 1600, 1603, 3080 |
| BseYI | CCCAGC | 2 cut(s) | 887, 2538 |
| BsgI | GTGCAG | 1 cut(s) | 540 |
| BshFI | GGCC | 3 cut(s) | 1181, 2038, 2902 |
| BshNI | GGYRCC | 2 cut(s) | 974, 1404 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1204 |
| BsiSI | CCGG | 1 cut(s) | 587 |
| BslFI | GGGAC | 2 cut(s) | 2044, 2528 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 108, 560, 1506, 2021, 2510, 2756, 2889, 2909 |
| BsmAI | GTCTC | 8 cut(s) | 30, 91, 1127, 1140, 1491, 2747, 2881, 2941 |
| BsmBI | CGTCTC | 2 cut(s) | 1127, 2881 |
| BsmFI | GGGAC | 2 cut(s) | 2044, 2528 |
| BsmI | GAATGC | 1 cut(s) | 1054 |
| BsnI | GGCC | 3 cut(s) | 1181, 2038, 2902 |
| Bso31I | GGTCTC | 2 cut(s) | 30, 91 |
| BsoBI | CYCGRG | 1 cut(s) | 1204 |
| Bsp119I | TTCGAA | 1 cut(s) | 1844 |
| Bsp1286I | GDGCHC | 3 cut(s) | 423, 977, 993 |
| Bsp1407I | TGTACA | 2 cut(s) | 1032, 2616 |
| Bsp19I | CCATGG | 1 cut(s) | 1894 |
| BspACI | CCGC | 7 cut(s) | 440, 978, 1082, 1939, 2438, 2609, 2731 |
| BspANI | GGCC | 3 cut(s) | 1181, 2038, 2902 |
| BspCNI | CTCAG | 6 cut(s) | 435, 1822, 2373, 2437, 2743, 2851 |
| BspLI | GGNNCC | 8 cut(s) | 24, 705, 976, 1285, 1406, 1783, 2032, 2182 |
| BspMAI | CTGCAG | 2 cut(s) | 972, 1621 |
| BspPI | GGATC | 3 cut(s) | 1278, 1291, 2360 |
| BspQI | GCTCTTC | 1 cut(s) | 1290 |
| BspT104I | TTCGAA | 1 cut(s) | 1844 |
| BspT107I | GGYRCC | 2 cut(s) | 974, 1404 |
| BspTI | CTTAAG | 1 cut(s) | 1580 |
| BspTNI | GGTCTC | 2 cut(s) | 30, 91 |
| BsrDI | GCAATG | 4 cut(s) | 1182, 1494, 1658, 2671 |
| BsrGI | TGTACA | 2 cut(s) | 1032, 2616 |
| BsrI | ACTGG | 3 cut(s) | 264, 475, 2761 |
| BssECI | CCNNGG | 4 cut(s) | 675, 1336, 1416, 1894 |
| BssNAI | GTATAC | 1 cut(s) | 2216 |
| BssSI | CACGAG | 1 cut(s) | 2884 |
| BssT1I | CCWWGG | 4 cut(s) | 675, 1336, 1416, 1894 |
| Bst1107I | GTATAC | 1 cut(s) | 2216 |
| Bst2BI | CACGAG | 1 cut(s) | 2884 |
| Bst2UI | CCWGG | 3 cut(s) | 213, 909, 2035 |
| Bst4CI | ACNGT | 7 cut(s) | 166, 493, 835, 1805, 2001, 2213, 2892 |
| Bst6I | CTCTTC | 6 cut(s) | 26, 48, 185, 781, 1290, 1841 |
| BstAFI | CTTAAG | 1 cut(s) | 1580 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2606 |
| BstAUI | TGTACA | 2 cut(s) | 1032, 2616 |
| BstBAI | YACGTR | 2 cut(s) | 560, 2520 |
| BstBI | TTCGAA | 1 cut(s) | 1844 |
| BstC8I | GCNNGC | 3 cut(s) | 438, 928, 1224 |
| BstDEI | CTNAG | 8 cut(s) | 422, 1256, 1608, 1830, 2381, 2445, 2751, 2859 |
| BstDSI | CCRYGG | 1 cut(s) | 1894 |
| BstEII | GGTNACC | 1 cut(s) | 589 |
| BstF5I | GGATG | 8 cut(s) | 1246, 1262, 1972, 2466, 2602, 2611, 2739, 2851 |
| BstH2I | RGCGCY | 1 cut(s) | 567 |
| BstHHI | GCGC | 1 cut(s) | 566 |
| BstMAI | GTCTC | 8 cut(s) | 30, 91, 1127, 1140, 1491, 2747, 2881, 2941 |
| BstNI | CCWGG | 3 cut(s) | 213, 909, 2035 |
| BstNSI | RCATGY | 1 cut(s) | 1226 |
| BstPI | GGTNACC | 1 cut(s) | 589 |
| BstSCI | CCNGG | 3 cut(s) | 211, 907, 2033 |
| BstSFI | CTRYAG | 4 cut(s) | 968, 1162, 1617, 2505 |
| BstSLI | GKGCMC | 1 cut(s) | 977 |
| BstV1I | GCAGC | 5 cut(s) | 487, 509, 1600, 1603, 3080 |
| BstV2I | GAAGAC | 9 cut(s) | 378, 811, 835, 1002, 1098, 2101, 2123, 2856, 2911 |
| BstX2I | RGATCY | 4 cut(s) | 454, 1283, 1360, 2161 |
| BstYI | RGATCY | 4 cut(s) | 454, 1283, 1360, 2161 |
| BstZ17I | GTATAC | 1 cut(s) | 2216 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1608, 2381 |
| BsuI | GTATCC | 1 cut(s) | 1547 |
| BsuRI | GGCC | 3 cut(s) | 1181, 2038, 2902 |
| BtgI | CCRYGG | 1 cut(s) | 1894 |
| BtsCI | GGATG | 8 cut(s) | 1246, 1262, 1972, 2466, 2602, 2611, 2739, 2851 |
| BtsI | GCAGTG | 1 cut(s) | 1233 |
| BtsIMutI | CAGTG | 4 cut(s) | 162, 1233, 1827, 1997 |
| Cac8I | GCNNGC | 3 cut(s) | 438, 928, 1224 |
| CfoI | GCGC | 1 cut(s) | 566 |
| Cfr13I | GGNCC | 3 cut(s) | 551, 2031, 2556 |
| CseI | GACGC | 2 cut(s) | 2126, 2649 |
| Csp6I | GTAC | 9 cut(s) | 643, 1033, 1201, 1405, 1515, 1825, 2476, 2617, 2760 |
| CviQI | GTAC | 9 cut(s) | 643, 1033, 1201, 1405, 1515, 1825, 2476, 2617, 2760 |
| DdeI | CTNAG | 8 cut(s) | 422, 1256, 1608, 1830, 2381, 2445, 2751, 2859 |
| DriI | GACNNNNNGTC | 2 cut(s) | 2395, 2521 |
| EaeI | YGGCCR | 1 cut(s) | 2900 |
| Eam1104I | CTCTTC | 6 cut(s) | 26, 48, 185, 781, 1290, 1841 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 2395, 2521 |
| EarI | CTCTTC | 6 cut(s) | 26, 48, 185, 781, 1290, 1841 |
| EciI | GGCGGA | 1 cut(s) | 2746 |
| Eco130I | CCWWGG | 4 cut(s) | 675, 1336, 1416, 1894 |
| Eco24I | GRGCYC | 2 cut(s) | 423, 993 |
| Eco31I | GGTCTC | 2 cut(s) | 30, 91 |
| Eco47I | GGWCC | 3 cut(s) | 551, 2031, 2556 |
| Eco57I | CTGAAG | 2 cut(s) | 152, 942 |
| Eco72I | CACGTG | 2 cut(s) | 560, 2520 |
| Eco81I | CCTNAGG | 2 cut(s) | 1608, 2381 |
| Eco88I | CYCGRG | 1 cut(s) | 1204 |
| Eco91I | GGTNACC | 1 cut(s) | 589 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2031 |
| EcoO65I | GGTNACC | 1 cut(s) | 589 |
| EcoRI | GAATTC | 1 cut(s) | 1678 |
| EcoRII | CCWGG | 3 cut(s) | 211, 907, 2033 |
| EcoT14I | CCWWGG | 4 cut(s) | 675, 1336, 1416, 1894 |
| EcoT22I | ATGCAT | 2 cut(s) | 2299, 2602 |
| EcoT38I | GRGCYC | 2 cut(s) | 423, 993 |
| ErhI | CCWWGG | 4 cut(s) | 675, 1336, 1416, 1894 |
| Esp3I | CGTCTC | 2 cut(s) | 1127, 2881 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 668, 700 |
| FaqI | GGGAC | 2 cut(s) | 2044, 2528 |
| FauNDI | CATATG | 2 cut(s) | 728, 2802 |
| FbaI | TGATCA | 3 cut(s) | 610, 1371, 1885 |
| FblI | GTMKAC | 1 cut(s) | 2215 |
| Fnu4HI | GCNGC | 6 cut(s) | 498, 501, 1082, 1614, 1617, 3069 |
| FokI | GGATG | 8 cut(s) | 1249, 1253, 1979, 2473, 2609, 2618, 2746, 2858 |
| FriOI | GRGCYC | 2 cut(s) | 423, 993 |
| Fsp4HI | GCNGC | 6 cut(s) | 498, 501, 1082, 1614, 1617, 3069 |
| FspBI | CTAG | 6 cut(s) | 140, 369, 378, 2100, 2564, 2583 |
| GlaI | GCGC | 1 cut(s) | 565 |
| GluI | GCNGC | 6 cut(s) | 498, 501, 1082, 1614, 1617, 3069 |
| GsaI | CCCAGC | 2 cut(s) | 891, 2542 |
| GsuI | CTGGAG | 2 cut(s) | 291, 1070 |
| HaeII | RGCGCY | 1 cut(s) | 567 |
| HaeIII | GGCC | 3 cut(s) | 1181, 2038, 2902 |
| HapII | CCGG | 1 cut(s) | 587 |
| HgaI | GACGC | 2 cut(s) | 2126, 2649 |
| HhaI | GCGC | 1 cut(s) | 566 |
| Hin6I | GCGC | 1 cut(s) | 564 |
| HinP1I | GCGC | 1 cut(s) | 564 |
| HindIII | AAGCTT | 4 cut(s) | 341, 924, 1583, 1763 |
| HpaII | CCGG | 1 cut(s) | 587 |
| HphI | GGTGA | 3 cut(s) | 499, 1470, 3017 |
| Hpy166II | GTNNAC | 5 cut(s) | 661, 1827, 2216, 2639, 2746 |
| Hpy188I | TCNGA | 7 cut(s) | 288, 360, 425, 864, 1594, 2446, 2869 |
| Hpy8I | GTNNAC | 5 cut(s) | 661, 1827, 2216, 2639, 2746 |
| HpyCH4III | ACNGT | 7 cut(s) | 166, 493, 835, 1805, 2001, 2213, 2892 |
| HpyCH4IV | ACGT | 4 cut(s) | 559, 999, 1513, 2519 |
| HpyF3I | CTNAG | 8 cut(s) | 422, 1256, 1608, 1830, 2381, 2445, 2751, 2859 |
| HpySE526I | ACGT | 4 cut(s) | 559, 999, 1513, 2519 |
| HspAI | GCGC | 1 cut(s) | 564 |
| KpnI | GGTACC | 1 cut(s) | 1408 |
| Ksp22I | TGATCA | 3 cut(s) | 610, 1371, 1885 |
| LguI | GCTCTTC | 1 cut(s) | 1290 |
| LmnI | GCTCC | 4 cut(s) | 132, 1051, 1735, 2180 |
| Lsp1109I | GCAGC | 5 cut(s) | 487, 509, 1600, 1603, 3080 |
| LweI | GCATC | 8 cut(s) | 874, 1231, 2279, 2323, 2398, 2587, 2596, 2635 |
| MaeI | CTAG | 6 cut(s) | 140, 369, 378, 2100, 2564, 2583 |
| MaeII | ACGT | 4 cut(s) | 559, 999, 1513, 2519 |
| MaeIII | GTNAC | 6 cut(s) | 74, 477, 487, 589, 1157, 3094 |
| MfeI | CAATTG | 3 cut(s) | 1011, 1347, 3036 |
| MflI | RGATCY | 4 cut(s) | 454, 1283, 1360, 2161 |
| MhlI | GDGCHC | 3 cut(s) | 423, 977, 993 |
| MlsI | TGGCCA | 1 cut(s) | 2902 |
| MluNI | TGGCCA | 1 cut(s) | 2902 |
| MlyI | GAGTC | 4 cut(s) | 397, 825, 1142, 3016 |
| MmeI | TCCRAC | 2 cut(s) | 1083, 1518 |
| Mox20I | TGGCCA | 1 cut(s) | 2902 |
| Mph1103I | ATGCAT | 2 cut(s) | 2299, 2602 |
| MroXI | GAANNNNTTC | 2 cut(s) | 685, 1575 |
| MscI | TGGCCA | 1 cut(s) | 2902 |
| MseI | TTAA | 8 cut(s) | 242, 1319, 1581, 1767, 1871, 2303, 2454, 2703 |
| MslI | CAYNNNNRTG | 6 cut(s) | 656, 1832, 2223, 2331, 2634, 3089 |
| Msp20I | TGGCCA | 1 cut(s) | 2902 |
| MspA1I | CMGCKG | 3 cut(s) | 500, 980, 2538 |
| MspCI | CTTAAG | 1 cut(s) | 1580 |
| MspI | CCGG | 1 cut(s) | 587 |
| MspR9I | CCNGG | 3 cut(s) | 213, 909, 2035 |
| MunI | CAATTG | 3 cut(s) | 1011, 1347, 3036 |
| Mva1269I | GAATGC | 1 cut(s) | 1054 |
| MvaI | CCWGG | 3 cut(s) | 213, 909, 2035 |
| NcoI | CCATGG | 1 cut(s) | 1894 |
| NdeI | CATATG | 2 cut(s) | 728, 2802 |
| NlaIV | GGNNCC | 8 cut(s) | 24, 705, 976, 1285, 1406, 1783, 2032, 2182 |
| NmuCI | GTSAC | 2 cut(s) | 74, 487 |
| NsiI | ATGCAT | 2 cut(s) | 2299, 2602 |
| NspI | RCATGY | 1 cut(s) | 1226 |
| NspV | TTCGAA | 1 cut(s) | 1844 |
| PaeI | GCATGC | 1 cut(s) | 1226 |
| PciSI | GCTCTTC | 1 cut(s) | 1290 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 113, 1287 |
| PctI | GAATGC | 1 cut(s) | 1054 |
| PdmI | GAANNNNTTC | 2 cut(s) | 685, 1575 |
| PfeI | GAWTC | 7 cut(s) | 260, 467, 681, 938, 1541, 2486, 2864 |
| PkrI | GCNGC | 6 cut(s) | 499, 502, 1083, 1615, 1618, 3070 |
| PleI | GAGTC | 4 cut(s) | 397, 824, 1142, 3016 |
| PmaCI | CACGTG | 2 cut(s) | 560, 2520 |
| PmlI | CACGTG | 2 cut(s) | 560, 2520 |
| PpsI | GAGTC | 4 cut(s) | 397, 824, 1142, 3016 |
| Ppu21I | YACGTR | 2 cut(s) | 560, 2520 |
| PpuMI | RGGWCCY | 1 cut(s) | 2031 |
| PsiI | TTATAA | 1 cut(s) | 800 |
| Psp5II | RGGWCCY | 1 cut(s) | 2031 |
| Psp6I | CCWGG | 3 cut(s) | 211, 907, 2033 |
| PspCI | CACGTG | 2 cut(s) | 560, 2520 |
| PspEI | GGTNACC | 1 cut(s) | 589 |
| PspFI | CCCAGC | 2 cut(s) | 887, 2538 |
| PspGI | CCWGG | 3 cut(s) | 211, 907, 2033 |
| PspN4I | GGNNCC | 8 cut(s) | 24, 705, 976, 1285, 1406, 1783, 2032, 2182 |
| PspPI | GGNCC | 3 cut(s) | 551, 2031, 2556 |
| PspPPI | RGGWCCY | 1 cut(s) | 2031 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1150, 1182 |
| PstI | CTGCAG | 2 cut(s) | 972, 1621 |
| PsuI | RGATCY | 4 cut(s) | 454, 1283, 1360, 2161 |
| PvuII | CAGCTG | 2 cut(s) | 500, 2538 |
| RsaI | GTAC | 9 cut(s) | 644, 1034, 1202, 1406, 1516, 1826, 2477, 2618, 2761 |
| RsaNI | GTAC | 9 cut(s) | 643, 1033, 1201, 1405, 1515, 1825, 2476, 2617, 2760 |
| RseI | CAYNNNNRTG | 6 cut(s) | 656, 1832, 2223, 2331, 2634, 3089 |
| SapI | GCTCTTC | 1 cut(s) | 1290 |
| SaqAI | TTAA | 8 cut(s) | 242, 1319, 1581, 1767, 1871, 2303, 2454, 2703 |
| SatI | GCNGC | 6 cut(s) | 498, 501, 1082, 1614, 1617, 3069 |
| Sau96I | GGNCC | 3 cut(s) | 551, 2031, 2556 |
| SchI | GAGTC | 4 cut(s) | 397, 825, 1142, 3016 |
| ScrFI | CCNGG | 3 cut(s) | 213, 909, 2035 |
| SduI | GDGCHC | 3 cut(s) | 423, 977, 993 |
| SfaNI | GCATC | 8 cut(s) | 874, 1231, 2279, 2323, 2398, 2587, 2596, 2635 |
| SfcI | CTRYAG | 4 cut(s) | 968, 1162, 1617, 2505 |
| SfuI | TTCGAA | 1 cut(s) | 1844 |
| SinI | GGWCC | 3 cut(s) | 551, 2031, 2556 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 656, 1832, 2223, 2331, 2634, 3089 |
| SmlI | CTYRAG | 2 cut(s) | 1580, 2690 |
| SmoI | CTYRAG | 2 cut(s) | 1580, 2690 |
| SphI | GCATGC | 1 cut(s) | 1226 |
| SsiI | CCGC | 7 cut(s) | 440, 978, 1082, 1939, 2438, 2609, 2731 |
| SspMI | CTAG | 6 cut(s) | 140, 369, 378, 2100, 2564, 2583 |
| StyD4I | CCNGG | 3 cut(s) | 211, 907, 2033 |
| StyI | CCWWGG | 4 cut(s) | 675, 1336, 1416, 1894 |
| TaaI | ACNGT | 7 cut(s) | 166, 493, 835, 1805, 2001, 2213, 2892 |
| TaiI | ACGT | 4 cut(s) | 562, 1002, 1516, 2522 |
| TaqII | GACCGA | 1 cut(s) | 2544 |
| TatI | WGTACW | 4 cut(s) | 642, 1032, 1824, 2616 |
| TauI | GCSGC | 1 cut(s) | 1084 |
| TfiI | GAWTC | 7 cut(s) | 260, 467, 681, 938, 1541, 2486, 2864 |
| Tru1I | TTAA | 8 cut(s) | 242, 1319, 1581, 1767, 1871, 2303, 2454, 2703 |
| Tru9I | TTAA | 8 cut(s) | 242, 1319, 1581, 1767, 1871, 2303, 2454, 2703 |
| TscAI | CASTG | 4 cut(s) | 169, 1233, 1834, 2004 |
| TseFI | GTSAC | 2 cut(s) | 74, 487 |
| TseI | GCWGC | 5 cut(s) | 497, 500, 1613, 1616, 3068 |
| Tsp45I | GTSAC | 2 cut(s) | 74, 487 |
| TspGWI | ACGGA | 5 cut(s) | 15, 1296, 2335, 2971, 3034 |
| TspRI | CASTG | 4 cut(s) | 169, 1233, 1834, 2004 |
| Vha464I | CTTAAG | 1 cut(s) | 1580 |
| VpaK11BI | GGWCC | 3 cut(s) | 551, 2031, 2556 |
| XapI | RAATTY | 4 cut(s) | 524, 1678, 1699, 2780 |
| XbaI | TCTAGA | 1 cut(s) | 2582 |
| XceI | RCATGY | 1 cut(s) | 1226 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3035 |
| XmiI | GTMKAC | 1 cut(s) | 2215 |
| XmnI | GAANNNNTTC | 2 cut(s) | 685, 1575 |
| XspI | CTAG | 6 cut(s) | 140, 369, 378, 2100, 2564, 2583 |
| Zsp2I | ATGCAT | 2 cut(s) | 2299, 2602 |